KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:39:53 2014 Check: 00 ..
Name: ENSP00000304501/1-332 Len: 531 Check: 2374 Weight: 1.00
Name: ENSTTRP00000001895/1-315 Len: 531 Check: 25 Weight: 1.00
Name: ENSBTAP00000009974/1-332 Len: 531 Check: 3478 Weight: 1.00
Name: BACU005241/1-382 Len: 531 Check: 9863 Weight: 1.00
Name: bmy_10705T0/1-373 Len: 531 Check: 8795 Weight: 1.00
//
1 50
ENSP00000304501/1-332 ---------- ---MLLE-TQ DALYVALELV IAALSVAGNV LVCAAVGTAN
ENSTTRP00000001895/1-315 ---------- ---MPLELTQ AALYVVLELA LAALAVAGNV LVCAAVGASS
ENSBTAP00000009974/1-332 ---------- ---MPLE-AQ DAVYVALELA LAALSVTGNV LVCAAVGTSS
BACU005241/1-382 ---------- ---------- ---------- ---------- ----------
bmy_10705T0/1-373 MGEESGAHHP PVRCQRPRGS CPQPPARHGD TGLLSPASLA VSHPCPGPGS
51 100
ENSP00000304501/1-332 TLQTPTNYFL VSLAAADVAV GLFAIPFAIT ISLGFCTDFY GCLFLACFVL
ENSTTRP00000001895/1-315 ALQTPTNYFL VSLAAADVAV GLFAIPFAVT ISLGFCTDFH SCLFLACFVL
ENSBTAP00000009974/1-332 ALQTPTNYFL VSLAAADVAV GLFAIPFAVT ISLGFCTDFH SCLFLACFVL
BACU005241/1-382 ---------- ---------- ---------M SSLG------ ----------
bmy_10705T0/1-373 ISQTRTVLPS WGCSSSAKSA SAFGAHVLLW VWLCPPTEAS RCRLLRTACR
101 150
ENSP00000304501/1-332 VLTQSSIFSL LAVAVDRYLA ICVPLR---- ---------- ----------
ENSTTRP00000001895/1-315 VVTQSSIFSL LAVAVDRYLA VRVPLR---- ---------- ----------
ENSBTAP00000009974/1-332 VLTQSSIFSL LAVAVDRYLA VRVPLR---- ---------- ----------
BACU005241/1-382 ---------- ---------- ----GR---- ---------- ----------
bmy_10705T0/1-373 AGSRG--LCR FPRGWPRSWG RRIPGTAGSF GQGRGQQIQG WGSGQLGALH
151 200
ENSP00000304501/1-332 -----YKSLV TGTRARGVIA VLWVLAFGIG LTPFLGWNSK DSATNNCTEP
ENSTTRP00000001895/1-315 -----YRSLV TGARARGVIA VLWILALGIG LTPFLGWNSK DRAA-NCTEP
ENSBTAP00000009974/1-332 -----YKSLV TGARARGVIA ALWVLAFGIG LTPFLGWNDR KIAT-NCTEP
BACU005241/1-382 -----YKGLV TGARARRVIA VLWVLAFGIG LTPFLGWNRK DSAT-NCTEP
bmy_10705T0/1-373 NLRGLYKGLV TGARARGVIA VLWVLAFGIG LTPFLGWNSK DSAT-NCTEP
201 250
ENSP00000304501/1-332 WDGTTNESCC LVKCLFENVV PMSYMVYFNF FGCVLPPLLI MLVIYIKIFL
ENSTTRP00000001895/1-315 WDGTTNASCC LVKCLFENVV PMSYMVYFNF FGCVLPPLLI MLVIYVKIFL
ENSBTAP00000009974/1-332 GDAATNVSCC LIRCLFENVV PMSYMVYFNF FGCVLPPLLI MLVIYVKIFL
BACU005241/1-382 WDGATNASCC LGRCLSENVV PMSYTVRSSP FGCVLPPLLG MLVLYLKIFL
bmy_10705T0/1-373 WDGTTNASCC LVKCLFENVV PMSYMVYFNF FGCVLPPLLI MLVIYVKIFL
251 300
ENSP00000304501/1-332 VACRQLQRTE LMDHSRTTLQ REIHAAKSLA MIVGIFALCW LPVHAVNCVT
ENSTTRP00000001895/1-315 VACRQLRRME LVGHSRTVLQ REVHAAKSLA MIVGIFALCW LPVHAINCAS
ENSBTAP00000009974/1-332 VACRQLQRTE LMDHSRTVLQ REIHAAKSLA LIVGIFALCW LPVHTINCAS
BACU005241/1-382 VACRQLQRVE LMDHSRTVLQ RGVHAAKSLA VIVGIFALCW LPVHAINCAT
bmy_10705T0/1-373 VACRQLQRME LMDHSRTILQ REIHAAKSLA VIVGIFALCW LPVHAINCVT
301 350
ENSP00000304501/1-332 LFQPAQGKNK PKWAMNMAIL LSHANSVVNP IVYAYRNRDF RYTFHKIIS-
ENSTTRP00000001895/1-315 LFQPGWAKEK PKWAMNTAIL LSHANSVVNP IVYAYRNQDF RYTFHKIIS-
ENSBTAP00000009974/1-332 LFQPTWAKVK PKWAINTAIL LSHANSAVNP IVYAYRNRDF RYTFHKIIS-
BACU005241/1-382 LFQPAWAKEK PKWAMNTAIL LSHANSVVNP IVYAYRNRDF RYAFHQVISR
bmy_10705T0/1-373 LFQPAWAKEK PKWAMNTAIL LSHANSVVNP IVYAYRNRDF RYTFHQIIS-
351 400
ENSP00000304501/1-332 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001895/1-315 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000009974/1-332 ---------- ---------- ---------- ---------- ----------
BACU005241/1-382 QELALAGYEF CISTLEEKIE REKELSEDTL SVEEKANTHL LLGMCLDTYA
bmy_10705T0/1-373 ---------- ---------- ---------- ---------- ----------
401 450
ENSP00000304501/1-332 RYLL------ ---------- ---------- ---------- ----------
ENSTTRP00000001895/1-315 RYVL------ ---------- ---------- ---------- ----------
ENSBTAP00000009974/1-332 RYIL------ ---------- ---------- ---------- ----------
BACU005241/1-382 RYLLFSKQPS QAQRMYEKAL QISEEILGER HPQTIVLLSD LAASLDVQGR
bmy_10705T0/1-373 RYVL------ ---------- ---------- ---------- ----------
451 500
ENSP00000304501/1-332 ----CQADV- KSGNGQAGVQ PALGVGL--- ---------- ----------
ENSTTRP00000001895/1-315 ----CRTDV- ---------- ---------- ---------- ----------
ENSBTAP00000009974/1-332 ----CRTHIL KSGEGQVGSQ PTLQLGL--- ---------- ----------
BACU005241/1-382 SDEACVHAQR ASDLARQGEH PELHVLLRNL AAVLTHGERY AQAEEVYQEA
bmy_10705T0/1-373 ----CRTDVR KSGDGQAGAQ PALQVGL--- ---------- ----------
501 550
ENSP00000304501/1-332 ---------- ---------- ---------- -
ENSTTRP00000001895/1-315 ---------- ---------- ---------- -
ENSBTAP00000009974/1-332 ---------- ---------- ---------- -
BACU005241/1-382 LKRAKLKRDE VSVQHIREEL AELSRKSRPV S
bmy_10705T0/1-373 ---------- ---------- ---------- -