KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:54 2014 Check: 00 .. Name: ENSP00000376142/1-399 Len: 433 Check: 8599 Weight: 1.00 Name: ENSBTAP00000009977/1-400 Len: 433 Check: 9459 Weight: 1.00 Name: ENSTTRP00000000523/1-212 Len: 433 Check: 8475 Weight: 1.00 Name: bmy_12559T0/1-402 Len: 433 Check: 8271 Weight: 1.00 Name: BACU003740/1-433 Len: 433 Check: 8521 Weight: 1.00 // 1 50 ENSP00000376142/1-399 MSDILRELLC VSEKAANIAR ACRQQEALFQ LLIEEKKEGE KNKKFAVDFK ENSBTAP00000009977/1-400 MSDILQELLR VSEKAANIAR ACRQQETLFQ LLIEEKKEGE KNKKFAVDFK ENSTTRP00000000523/1-212 MSGILRELLC VSEKAANIAR ACRQQEALFQ LLIEEKKEGE KNKKFAVDFK bmy_12559T0/1-402 MSGILRELLC VSEKAANIAR ACRQQEALFQ LLIEEKKEGE KNKKFAVDFK BACU003740/1-433 MSGILRELLC VSEKAANIAR ACRQQEALFQ LLIEEKKEGE KNKKFAVDFK 51 100 ENSP00000376142/1-399 TLADVLVQEV IKQNMENKFP GLEKNIFGEE SNEFTNDWGE KITLRLCSTE ENSBTAP00000009977/1-400 TLADVLVQEV IKENMENKFP GLGKKIFGEE SNEFTNDLGE KIIMRLGPTE ENSTTRP00000000523/1-212 TLADVLVQEV IKQNMENKFP GLGKKIFGEE SNEFTNDLXX XXXXXXXXXX bmy_12559T0/1-402 TLADVLVQEV IKQNMENKFP GLGKKIFGEE SNEFTNDLGE KIIIRLCPTE BACU003740/1-433 TLADVLVQEV IKQNMENKFP GLGKKIFGEE SNEFTNDLGE KIIIRLCPTE 101 150 ENSP00000376142/1-399 EETAELLSKV LNGNKVASEA LARVVHQDVA FTDPTLDSTE INVPQDILGI ENSBTAP00000009977/1-400 EETVALLSKV LNGNKLASEA LAKVVHQDVF FSDPALDSVE INIPQDILGI ENSTTRP00000000523/1-212 XXTVDLLNKV LNGNKLASEA LAKVVHQDVV FSDPALDAIE INIPQDTLGV bmy_12559T0/1-402 EETVDLLNKV LNGNKLASEA LAKVVHQDVV FSDPALDAIE INIPQDTLGV BACU003740/1-433 EETVDLLNKV LNGNKLASEA LAKVVHQDVV FSDPALDAIE INIPQDTLGV 151 200 ENSP00000376142/1-399 WVDPIDSTYQ YIKGSADIKS NQGIFPCGLQ CVTILIGVYD IQTGVPLMGV ENSBTAP00000009977/1-400 WVDPIDSTYQ YIKGSADITP NQGIFPSGLQ CVTVLIGVYD IQTGVPLMGV ENSTTRP00000000523/1-212 WVDPIDSTYQ YIKGSADIKS NQGIFPSGLQ CVTILIGVYD IQTGVPLMGV bmy_12559T0/1-402 WVDPIDSTYQ YIKGSADIKS NQGIFPSGLQ CVTILIGVYD IQTGVPLMGV BACU003740/1-433 WVDPIDSTYQ YIKGSADIKS NQGIFPSGLQ CVTILIGVYD IQTGVPLMGV 201 250 ENSP00000376142/1-399 INQPFVSRDP NTLRWKGQCY WGLSYMGTNM HSLQLTISRR NGSETH---T ENSBTAP00000009977/1-400 INQPFVSQDL HTRRWKGQCY WGLSYLGTNI HSLLPPVSTR SNSEAQSQGT ENSTTRP00000000523/1-212 INHPFVSQDL NT-------- ---------- ---------- ---------- bmy_12559T0/1-402 INQPFVSQDL NTLRWKGQCY WGLSYMGTNI HSFLPPVSTR NSSETQSQVT BACU003740/1-433 INQPFVSQDL NTLRWKGHCY WGLSYMGTNI HSFLPPVSTR NSSETQSQVT 251 300 ENSP00000376142/1-399 GNTGSEAAFS PSFSAVISTS EKETIKAALS RVCGDRIFGA AGAGYKSLCV ENSBTAP00000009977/1-400 QNPSSEGSCR --FSVVISTS EKETIKGALS HVCGERIFRA AGAGYKSLCV ENSTTRP00000000523/1-212 ---------- ---------- ---------- ---------- ---------- bmy_12559T0/1-402 PNPSSEAECS HPFSAVISTS EKETVKAALS RVCGERIFRA AGAGYKSLCV BACU003740/1-433 PNPSSEAECS HPFSAVISTS EKETVKAALS RVCGERIFRA AGAGYKSLCV 301 350 ENSP00000376142/1-399 VQGLVDIYIF SEDTTFKWDS CAAHAILRAM GGGIVDLKEC LERNPETGLD ENSBTAP00000009977/1-400 ILGLADIYIF SEDTTFKWDS CAAHAILRAM GGGMVDLKEC LERNPDTGLD ENSTTRP00000000523/1-212 ---------- ---------- ---------- ---------- ---------- bmy_12559T0/1-402 VLGLVDIYIF SEDTTFKWDS CAAHAILRAM GGGMVDLKEC LERNPNSGLD BACU003740/1-433 VLGLVDIYIF SEDTTFKWDS CAAHAILRAM GGGMVDLKEC LERNPNSGLD 351 400 ENSP00000376142/1-399 LPQLVYHVEN EGAAGVDRWA NKGGLIAYRS RKRLETF--- ---------- ENSBTAP00000009977/1-400 LPQLVYHVGN EGAAGVDQWA NKGGLIAYRS EKQLETF--- ---------- ENSTTRP00000000523/1-212 ---------- ---------- ---------- ---------- ---------- bmy_12559T0/1-402 LPQLVYHVGN RGAAGVDQWA NKGGLIAYRS KKQLEAF--- ---------- BACU003740/1-433 LPQLVYHVGN RGAAGVDQWA NKGGLIAYRS KKQLEAFXXX XXXXXXASST 401 450 ENSP00000376142/1-399 ---LSLLVQN LAPAETHT-- ---------- --- ENSBTAP00000009977/1-400 ---LSRLLQH LAPVATHT-- ---------- --- ENSTTRP00000000523/1-212 ---------- ---------- ---------- --- bmy_12559T0/1-402 ---LSRLLRH LAPVDAHT-- ---------- --- BACU003740/1-433 TWPLWMYIHR RAPSSGTRNP PSSSEEHFSI MCS