KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:56 2014 Check: 00 .. Name: BACU004020/1-510 Len: 573 Check: 4689 Weight: 1.00 Name: ENSTTRP00000015732/1-411 Len: 573 Check: 2369 Weight: 1.00 Name: ENSP00000343742/1-411 Len: 573 Check: 160 Weight: 1.00 Name: bmy_18979T0/1-343 Len: 573 Check: 6570 Weight: 1.00 Name: ENSBTAP00000009990/1-412 Len: 573 Check: 9952 Weight: 1.00 // 1 50 BACU004020/1-510 MTHWFHRNPL KATAPVPFNY YGMVTGPAAS KICRYLKKSL SEKCSKQTRD ENSTTRP00000015732/1-411 MTHWFHRNPL KATAPVPFNY YGVVTGPAAS KIC-XXXXXX XXXXXXXXXX ENSP00000343742/1-411 MTHWFHRNPL KATAPVSFNY YGVVTGPSAS KIC-NDLRSS RARLLELFTD bmy_18979T0/1-343 MTHWFHRNPL KATAPVPFNY YGLVTGPAAS KIC-SDLRSS RARLLELFTD ENSBTAP00000009990/1-412 MTHWFHRNPL KATAPVSFNY YGVVTGPAAS KICRSDLRSS RARLLELFTD 51 100 BACU004020/1-510 ISCK------ -TENVFYLFI GFINSLDEST QESKLRYIQN FKWTDTLQGQ ENSTTRP00000015732/1-411 XXXXXXXXXX XXXXXXXXXX XFINSLDEST QESKLRYIQN FKWTDTLQGQ ENSP00000343742/1-411 LSCNPEMMKN AADSYFSLLQ GFINSLDEST QESKLRYIQN FKWTDTLQGQ bmy_18979T0/1-343 LNCNPQMMKN AADSYFSLLQ GFINSLDEST QESKLRYIQN FKWTDTLQGQ ENSBTAP00000009990/1-412 LSCNPEMMKN AADSYFSLLQ GFINSLDEST QESKLRYIQN FKWTDTLQGQ 101 150 BACU004020/1-510 VPSAQQDAVF ELISMGFNVA LWYTKYASRL AGKENITEDE AKEVHRSLKI ENSTTRP00000015732/1-411 VPSAQQDAVF ELISMGFNVA LWYTKYASRL AGKENITEDE AKEVHRSLKI ENSP00000343742/1-411 VPSAQQDAVF ELISMGFNVA LWYTKYASRL AGKENITEDE AKEVHRSLKI bmy_18979T0/1-343 VPSAQQDAVF ELISMGFNVA LWYTKYASRL AGKENITEDE AKEVHRSLKI ENSBTAP00000009990/1-412 VPSAQQDAVF ELISMGFNVA LWYTKYASRL AGKENITEDE AKEVHRSLKI 151 200 BACU004020/1-510 AAGIFKHLKE SHIPKLITPA EKGRDLEARL VEAYIIQCQA EAQEVTIARA ENSTTRP00000015732/1-411 AAGIFKHLKE SHIPKLITPA EKGRDLEARL IEAYIIQCQA EAQEVTIARA ENSP00000343742/1-411 AAGIFKHLKE SHLPKLITPA EKGRDLESRL IEAYVIQCQA EAQEVTIARA bmy_18979T0/1-343 AAGIFKHLKE SHIPKLITPA EKGRDLEARL VEAYIIQCQA EAQEVTIARA ENSBTAP00000009990/1-412 AAGIFKHLKE SHIPKLITPA EKGRDLEARL IEAYIIQCQA EAQEVTIARA 201 250 BACU004020/1-510 IELKHAPGLI AALAYETANF YQKA------ ---------- ---------- ENSTTRP00000015732/1-411 IELKHAPVLI AALAYETANF YQKADHALSS LEPAYSAKWR KYLHLKMCFY ENSP00000343742/1-411 IELKHAPGLI AALAYETANF YQKADHTLSS LEPAYSAKWR KYLHLKMCFY bmy_18979T0/1-343 IELKHAPGLI AALAYETANF YQKADHALSS LEPAYSAKWR KYLHLKMCFY ENSBTAP00000009990/1-412 IELKHAPGLI AALAYETANF YQKADHALSS LEPAYSAKWR KYLHLKMCFY 251 300 BACU004020/1-510 ---------- ---------- ---------- VYAKAEALCK EYGETKGPGP ENSTTRP00000015732/1-411 TAYAYCYHGQ TLLASDKCGE AIRSLQEAEK FYAKAEALCK EYGETKGPGP ENSP00000343742/1-411 TAYAYCYHGE TLLASDKCGE AIRSLQEAEK LYAKAEALCK EYGETKGPGP bmy_18979T0/1-343 TAYAYCYHGQ TLLASDKCGE AIRSLQEAEK FYAKAEALCK EYGETKGAGP ENSBTAP00000009990/1-412 TAYAYCYHGQ TLLASDKCGE AIRSLQEAEK FYAKAEALCK EYGETKGPGP 301 350 BACU004020/1-510 TAKPSGHLFF RKLGNLVKNT LEKCQRENGF IYFQKVPTEA PQLELKANYG ENSTTRP00000015732/1-411 TVKPSGHLFF RKLGNLVKNT LEKCQRENGF IYFQKVPTEA PQLELKAVYG ENSP00000343742/1-411 TVKPSGHLFF RKLGNLVKNT LEKCQRENGF IYFQKIPTEA PQLELKANYG bmy_18979T0/1-343 TVKPSGHLFF RKLGNLA--- ---------- ---------- ---------- ENSBTAP00000009990/1-412 TVKPSGHLFF RKLGNLVKNT LEKCQRENGF IYFQKVPTEA PQLELKANYG 351 400 BACU004020/1-510 LVEPVPFEFP PTSVHWTPET LAAFDLTQRP KDDSVLVPYE GYEFGPRAIF ENSTTRP00000015732/1-411 LVEPVPFEFP PTSVHWTPET LAAFDLTQRP KDDSA----- ---------- ENSP00000343742/1-411 LVEPIPFEFP PTSVQWTPET LAAFDLTKRP KDDST----- ---------- bmy_18979T0/1-343 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009990/1-412 LVEPVPFEFP PPSAHWTPET LAAFDLTKRP KDDSA----- ---------- 401 450 BACU004020/1-510 FLMEKDSFQQ LELEKGRPSK RRTPKRVIHF VDGDIMEEYS TEEEEEKEEQ ENSTTRP00000015732/1-411 ---------- ----KPKPEE AVKPMK---- ---------- ---------- ENSP00000343742/1-411 ---------- ----KPKPEE EVKPVK---- ---------- ---------- bmy_18979T0/1-343 ---------- ----KPKPEE VVKPVK---- ---------- ---------- ENSBTAP00000009990/1-412 ---------- ----KPKPEE VVKPVK---- ---------- ---------- 451 500 BACU004020/1-510 RTNSTLDPSK LSWGSYLWFW VGRIARTLFS TCEFLGGRFA VFFGLNQPKY ENSTTRP00000015732/1-411 --EPDIKPQK ---------- ---------- ---------- ---------- ENSP00000343742/1-411 --EPDIKPQK ---------- ---------- ---------- ---------- bmy_18979T0/1-343 --EPDIKPQK ---------- ---------- ---------- ---------- ENSBTAP00000009990/1-412 --EPDIKPQK ---------- ---------- ---------- ---------- 501 550 BACU004020/1-510 QYVLNEYYRT QNKESDKESE GNGSKTQPAN VPNEKCHLEA GGREYGTRQQ ENSTTRP00000015732/1-411 ---------- ---------- ---------- --DTGCYIS- ---------- ENSP00000343742/1-411 ---------- ---------- ---------- --DTGCYIS- ---------- bmy_18979T0/1-343 ---------- ---------- ---------- --DTGCYIS- ---------- ENSBTAP00000009990/1-412 ---------- ---------- ---------- --DTGCYIS- ---------- 551 600 BACU004020/1-510 DIAEGIPQWS ISSSEGLKAD SSS ENSTTRP00000015732/1-411 ---------- ---------- --- ENSP00000343742/1-411 ---------- ---------- --- bmy_18979T0/1-343 ---------- ---------- --- ENSBTAP00000009990/1-412 ---------- ---------- ---