KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:57 2014 Check: 00 .. Name: ENSTTRP00000002143/1-735 Len: 912 Check: 5179 Weight: 1.00 Name: ENSP00000430684/1-756 Len: 912 Check: 2135 Weight: 1.00 Name: ENSBTAP00000009995/1-756 Len: 912 Check: 2039 Weight: 1.00 Name: bmy_09716T0/1-820 Len: 912 Check: 3787 Weight: 1.00 Name: BACU009423/1-875 Len: 912 Check: 7088 Weight: 1.00 // 1 50 ENSTTRP00000002143/1-735 ---------- ---------- --------MS WSP------- ---------- ENSP00000430684/1-756 ---------- ---------- --------MS WSP------- ---------- ENSBTAP00000009995/1-756 ---------- ---------- --------MS WSP------- ---------- bmy_09716T0/1-820 ---------- ---------- ---------- ---------- ---------- BACU009423/1-875 MEIYTRVLIS DSGKSPAVNS GGEEREHGWH WQPFSEFQML TKKKGVLQET 51 100 ENSTTRP00000002143/1-735 ---------- ---------- -------SLP TQTCGAWEMK ERLGTGGFGN ENSP00000430684/1-756 ---------- ---------- -------SLT TQTCGAWEMK ERLGTGGFGN ENSBTAP00000009995/1-756 ---------- ---------- -------SLP TQTCGAWEMK ERLGTGGFGN bmy_09716T0/1-820 ---------- ---------- ---------- --------MK ERLGTGGFGN BACU009423/1-875 LIFTLGSNLI APFINISGSG TLAIRYWTLR GQTCGAWEMK ERLGTGGFGN 101 150 ENSTTRP00000002143/1-735 VIRWHNQETG EQIAIKQCRQ ELSPRNRERW CLEIQIMRRL NHPNVVAARD ENSP00000430684/1-756 VIRWHNQETG EQIAIKQCRQ ELSPRNRERW CLEIQIMRRL THPNVVAARD ENSBTAP00000009995/1-756 VIRWHNQETG EQIAIKQCRQ ELSPRNRERW CLEIQIMRRL NHPNVVAARD bmy_09716T0/1-820 VIRWHNQETG EQIAIKQCRQ ELSPRNRERW CLEIQIMR-- --SKAASGKG BACU009423/1-875 VIRWHNQETG EQIAIKQCRQ ELSPRNRERW CLEIQIMRRL NHPNVVAARD 151 200 ENSTTRP00000002143/1-735 VPEGMQ---- SLAPNDLPLL AMEY-CQGGD LRKYLNQFEN CCGLREGAIL ENSP00000430684/1-756 VPEGMQ---- NLAPNDLPLL AMEY-CQGGD LRKYLNQFEN CCGLREGAIL ENSBTAP00000009995/1-756 VPEGMQ---- SLAPNDLPLL AMEY-CQGGD LRKYLNQFEN CCGLREGAIL bmy_09716T0/1-820 SEGGVQWLLW ALGSSGATVA ELRWACFPQD PTQYLNQFEN CCGLREGAIL BACU009423/1-875 VPEGMQ---- SLAPNDLPLL AMEY-CQGGD LRKYLNQFEN CCGLREGAIL 201 250 ENSTTRP00000002143/1-735 TLLSDIASAL RYLHENRIIH RDLKPENIVL QQGEQRLIHK IIDLGYAKEL ENSP00000430684/1-756 TLLSDIASAL RYLHENRIIH RDLKPENIVL QQGEQRLIHK IIDLGYAKEL ENSBTAP00000009995/1-756 TLLSDIASAL RYLHENRIIH RDLKPENIVL QQGEQRLIHK IIDLGYAKEL bmy_09716T0/1-820 TLLSDIASAL RYLHENRIIH RDLKPENIVL QQGEQRLIHK IIDLGYAKEL BACU009423/1-875 TLLSDIASAL RYLHENRIIH RDLKPENIVL QQGEQRLIHK IIDLGYAKEL 251 300 ENSTTRP00000002143/1-735 DQGSLCTSFV GTLQYLAPEL LEQQKYTVTV DYWSFGTLAF ECITGFRPFL ENSP00000430684/1-756 DQGSLCTSFV GTLQYLAPEL LEQQKYTVTV DYWSFGTLAF ECITGFRPFL ENSBTAP00000009995/1-756 DQGSLCTSFV GTLQYLAPEL LEQQKYTVTV DYWSFGTLAF ECITGFRPFL bmy_09716T0/1-820 DQGSLCTSFV GTLQYLAPEL LEQQKYTVTV DYWSFGTLAF ECITGFRPFL BACU009423/1-875 DQGSLCTSFV GTLQYLAPEL LEQQKYTVTV DYWSFGTLAF ECITGFRPFL 301 350 ENSTTRP00000002143/1-735 PNWQPVQWHS KVRQKSEMDI VVSEDLNGAV KFSSSLPHPS NLNSVLAQRL ENSP00000430684/1-756 PNWQPVQWHS KVRQKSEVDI VVSEDLNGTV KFSSSLPYPN NLNSVLAERL ENSBTAP00000009995/1-756 PNWQPVQWHS KVRQKSEMDI VVSEDLNGAV KFSSSLPHPN NLNSVLAQRL bmy_09716T0/1-820 PNWQPVQWHS KVRQKSEMDI VVSEDLNGAV KFSSSLPHPS NLNSVLAQRL BACU009423/1-875 PNWQPVQWHS KVRQKSEMDI VVSEDLNGAV KFSSSLPQPS NLNSVLAQRL 351 400 ENSTTRP00000002143/1-735 EKWLQLMLMW HPRQRGTDPV YGPNGCFKAL DDILNLKLVH VLNMVTGTIH ENSP00000430684/1-756 EKWLQLMLMW HPRQRGTDPT YGPNGCFKAL DDILNLKLVH ILNMVTGTIH ENSBTAP00000009995/1-756 EKWLQLMLMW HPRQRGTDPV YGPNGCFKAL DDILNLKLLH VLNMVTGTLH bmy_09716T0/1-820 EKWLQLMLMW HPRQRGTDPV YGPNGCFRAL DDILNLKLVH VLNMVTGTIH BACU009423/1-875 EKWLQLMLMW HPRQRGTHPV YGPNGCFRAL DDILNLKLVH VLNMVTGTIH 401 450 ENSTTRP00000002143/1-735 TYPVAEDESL PSLQARIQQD TGIPEEDQEL LQEAGLALTP DKPAAQCASD ENSP00000430684/1-756 TYPVTEDESL QSLKARIQQD TGIPEEDQEL LQEAGLALIP DKPATQCISD ENSBTAP00000009995/1-756 TYPVTEDESL QSLKARIRQD TGILEEDQEL LQEAGLALIP DKPAAQCLSD bmy_09716T0/1-820 TYPVAEDESL PSLKARIQQD TGIPEEDQEL LQEAGLALTP DKPAAQCTSD BACU009423/1-875 TYPVAEDESL PSLKARIQQD TGIPEEDQEL LQEAGLALTP DKPAAQCTSD 451 500 ENSTTRP00000002143/1-735 GKLNEGRTLD MDLVFLFDNN RVAYETQISP RPQPESVSCI LQEPKRSLPF ENSP00000430684/1-756 GKLNEGHTLD MDLVFLFDNS KITYETQISP RPQPESVSCI LQEPKRNLAF ENSBTAP00000009995/1-756 GKLNEGRTLD MDLVFLFDNS RVTYESQVSP QPQPESVSCI LQEPKRNLPF bmy_09716T0/1-820 GKLNEGRTLD MDLVFLFDNS RVAYETQISP RPQPESVSCI LQEPKRSLPF BACU009423/1-875 GKLNEGRTLD MDLVFLFDNS RVAYETQISP RPQPESVSCI LQEPKRSLPF 501 550 ENSTTRP00000002143/1-735 FQLRKVWGQV WHSIQALKED CGRLQQGQRA AMMNLLRNNS CLSKMKNSMA ENSP00000430684/1-756 FQLRKVWGQV WHSIQTLKED CNRLQQGQRA AMMNLLRNNS CLSKMKNSMA ENSBTAP00000009995/1-756 FQLRKVWGQV WHSIQALKED CSRLQQGQRA AMMNLLRNNS CLSKMKNSMA bmy_09716T0/1-820 FQLRKVWGQV WHSIQALKED CGRLQQGQRA AMMNLLRNNS CLSKMKNSMA BACU009423/1-875 FQLRKVWGQV WHSIQALKED WGCLQQGQRA AMMNLLRNNS CLSKMKNSMA 551 600 ENSTTRP00000002143/1-735 SMSQQLKAKL DFFKTSIQID QEKYSEQKEF GIXXXXXXXX XXXXXXXXXX ENSP00000430684/1-756 SMSQQLKAKL DFFKTSIQID LEKYSEQTEF GITSDKLLLA WREMEQAVEL ENSBTAP00000009995/1-756 SMSQQLKAKL DFFKTSIQID LEKYREQTEF GITSDKLLLA WREMEQAVEL bmy_09716T0/1-820 SMSQQLKAKL DFFKTSIQID LEKYSEQKEF GITSDKLLLA WREMEQAVEL BACU009423/1-875 SMSQQLKAKL DFFKTSIQID LEKYSEQKEF GITSDKLLLA WREMEQAVEL 601 650 ENSTTRP00000002143/1-735 XXXENEVKQL VERMMALQTD IVDLQRSPLG WKQGGTLDDL EEQARELYRR ENSP00000430684/1-756 CGRENEVKLL VERMMALQTD IVDLQRSPMG RKQGGTLDDL EEQARELYRR ENSBTAP00000009995/1-756 CGRENEVKHL VERMMALQTD IVDLQRSPMG RKQGGTLDDL EEQARELYRR bmy_09716T0/1-820 CGRENEVKHL VERMMALQTD IVDLQRSPMG RKQGGTLDDL EEQARELYRR BACU009423/1-875 CGRGVSPPSL ---------N ICSDESVPTC L--------- ---------- 651 700 ENSTTRP00000002143/1-735 LREKPRDQRT DGDSQEMVRL LLQAIQGFEK KVRVIYTQL- ---------- ENSP00000430684/1-756 LREKPRDQRT EGDSQEMVRL LLQAIQSFEK KVRVIYTQL- ---------- ENSBTAP00000009995/1-756 LREKPRDQRT DGDSQEMVRL LLQAIQGFEK KVRVIYTQL- ---------- bmy_09716T0/1-820 LREKPRDQRT DGDSQEMVRL LLQAIQGFEK KVRVIYTQLR YQAAFPPAGR BACU009423/1-875 ----LKDQRT DGDSQEMVRL LLQAIQGFEK KVRVIYTQLR YQAAFPPAGR 701 750 ENSTTRP00000002143/1-735 ---------- ---------- ---------- ---------- ---------- ENSP00000430684/1-756 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009995/1-756 ---------- ---------- ---------- ---------- ---------- bmy_09716T0/1-820 SEEGRRAVCE ASPTHLSPAG PPPAAAERSL NCRGCVLLPP AHVPLELVMF BACU009423/1-875 SEEGRRAVCE ASPTHLSPAG PPPAAAERSL NCRGCVLLPA THVPLELVTF 751 800 ENSTTRP00000002143/1-735 ---SKTVVCK QKALELLPKV EEVVSLMSED EKTVVRLQEK RQKELWNLLK ENSP00000430684/1-756 ---SKTVVCK QKALELLPKV EEVVSLMNED EKTVVRLQEK RQKELWNLLK ENSBTAP00000009995/1-756 ---SKTVVCK QKALELLPKV EEVVSLMSED EKMVVRLQEK RQKELWNLLK bmy_09716T0/1-820 VLHSKTVVCK QKALELLPKV EEVVRLMSED EKTVVRLQEK RQKELWNLLK BACU009423/1-875 VLHSKTVVCK QKALELLPKV EEVVSLMSED ERTVVRLQEK RQKELWNLLK 801 850 ENSTTRP00000002143/1-735 IACSKVRGPV SGSPDSMNTS RLSHPSQLLS QPCPAPDSFP EAVKRSEDLV ENSP00000430684/1-756 IACSKVRGPV SGSPDSMNAS RLSQPGQLMS QPSTASNSLP EPAKKSEELV ENSBTAP00000009995/1-756 IACSKVRGPV SGSPDSMNAS RLSHPCQLMS QPCTAPDSLP EAAEKSEDLV bmy_09716T0/1-820 IACSKVRGPV SGSPESMNTS RLSQPSRLLS QPCAAPDSLP EAAKKSEDLV BACU009423/1-875 IACSKVRGPV SGSPDSMNTS RLSQPSQLLS QPCSAPDSLP EAVKKSEDLV 851 900 ENSTTRP00000002143/1-735 AEAHTLCTQL ENALQDTMKD QDQSLR---- ---------- ---------- ENSP00000430684/1-756 AEAHNLCTLL ENAIQDTVRE QDQSFTAL-- -----DWSWL QTEEEEHSCL ENSBTAP00000009995/1-756 AEAHTLCTQL ENALQDTMKE QDQSLRSL-- -----DWSWL QSEEEEQQSL bmy_09716T0/1-820 AEAHTLCTQL ENALQDTMKE QDQSLRVMAR GNPRCSTSFL SAANEKKQIE BACU009423/1-875 AEAHTLCAQL ENALQDTMKE QDQSLRVMAR GNPRCSMSFL SAANEKKQIE 901 950 ENSTTRP00000002143/1-735 ---------- -- ENSP00000430684/1-756 EQAS------ -- ENSBTAP00000009995/1-756 ERAS------ -- bmy_09716T0/1-820 RRCRASSISV YS BACU009423/1-875 RRCRASSISV YA