KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:58 2014 Check: 00 .. Name: ENSP00000001008/1-459 Len: 533 Check: 7365 Weight: 1.00 Name: ENSBTAP00000009998/1-459 Len: 533 Check: 4763 Weight: 1.00 Name: BACU003118/1-440 Len: 533 Check: 2103 Weight: 1.00 Name: bmy_06797T0/1-522 Len: 533 Check: 9433 Weight: 1.00 Name: ENSTTRP00000005025/1-458 Len: 533 Check: 1935 Weight: 1.00 // 1 50 ENSP00000001008/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009998/1-459 ---------- ---------- ---------- ---------- ---------- BACU003118/1-440 ---------- ---------- ---------- ---------- ---------- bmy_06797T0/1-522 PEPAAVSRKF SPHVFRGRPA PPSPSLCGGG TNRSPGRPRP TSCARPRRSR ENSTTRP00000005025/1-458 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000001008/1-459 ---------- ---------- ----MTAEEM KATESGAQSA PLPMEGVDIS ENSBTAP00000009998/1-459 ---------- ---------- ----MTAEET KAAESGAQSA PLRLEGVDIS BACU003118/1-440 ---------- ---------- ---------- ---------M PAPVYQLLCW bmy_06797T0/1-522 GARAPAGRPH SRALTGARCP RNGTMTAEET KAAESAAQSA PLPLEGVDIS ENSTTRP00000005025/1-458 ---------- ---------- ----MTAEET KAAESGAQSA PLPLEGVDIS 101 150 ENSP00000001008/1-459 PKQDEGVLKV IKREGTGTEM PMIGDRVFVH YTGWLLDGTK FDSSLDRKDK ENSBTAP00000009998/1-459 PKQDEGVLKV IKREGTGMET PMIGDRVFVH YTGWLLDGTK FDSSLDRKDR BACU003118/1-440 TTV---LFKV IKREGTGTEM PMIGDRVSVH YTGWLLDGTK FDSSLDRKDR bmy_06797T0/1-522 PKQDEGVLKV IKREGTGTEM PMIGDRVSVH YTGWLLDGTK FDSSLDRKDR ENSTTRP00000005025/1-458 PKQDEGVLKV IKREGTGTEM PMIGDRVSVH YTGWLMDGTK FDSSLDREDR 151 200 ENSP00000001008/1-459 FSFDLGKGEV IKAWDIAIAT MKVGEVCHIT CKPEYAYGSA GSPPKIPPNA ENSBTAP00000009998/1-459 FSFDLGKGEV IKAWDIAVAT MKVGEVCHIT CKPEYAYGLA GSPPKIPPNA BACU003118/1-440 FSFDLGKGEV IKAWDIAVAT MKVGEVCHIT CKPEYAYGSA GSPPKIPPNA bmy_06797T0/1-522 FSFDLGK--- --------AT MKVGEVCHIT CKPEYAYGSA GSPPKIPPNA ENSTTRP00000005025/1-458 FSFDLGKGEV IKAWDIAVAT MKVGEVCHIT CKPEYAYGSA GSPPKIPPNA 201 250 ENSP00000001008/1-459 TLVFEVELFE FKGEDLTEEE DGGIIRRIQT RGEGYAKPNE GAIVEVALEG ENSBTAP00000009998/1-459 TLVFEVELFE FKGEDLTEEE DGGIIRRIRT RGEGYAKPNE GALVEVALEG BACU003118/1-440 TLVFEVELFE FKGEDLTDEE DGGIIRRIRA RGEGHAKPND GALVEVALEG bmy_06797T0/1-522 TLVFEVELFE FKGEDLTDEE DGGIIRRIRA RGEGHAKPND GALVEVALEG ENSTTRP00000005025/1-458 TLVFEVELFE FKGEDLTDEE DGGIIRRIRA RGEGHAKPND GALVEVALEG 251 300 ENSP00000001008/1-459 YYKDKLFDQR ELRFEIGEGE NLDLPYGLER AIQRMEKGEH SIVYLKPSYA ENSBTAP00000009998/1-459 YFKDQVFDRR ELRFEVGEGE SMDLPCGLEK AIQRMEKGEH SIVYLKPRYA BACU003118/1-440 YYKDQIFDRR ELRFEVGEGE SVDLPCGLEK AIQRMEKGEH SIVYLKPSYA bmy_06797T0/1-522 YYKDQIFDRR ELRFEVGEGE SVDLPCGLEK AIQRMEKGEH SIVYLKPSYA ENSTTRP00000005025/1-458 YYKDQIFDRR ELRFEVGEGE SVDLPCGLEK AIQRMEKGEH SIVYLKPSYA 301 350 ENSP00000001008/1-459 FGSVGKEKFQ IPPNAELKYE LHLKSFEKAK ESWEMNSEEK LEQSTIVKER ENSBTAP00000009998/1-459 FGSAGKEKFQ IPPNAELKYE IHLKSFEKAK ESWEMSSEEK LEQSTIVKER BACU003118/1-440 FGSVGKEKFQ IPPNAELKYE VQLKSFEKAK ESWEMSSEEK LEQSTIVKER bmy_06797T0/1-522 FGSVGKEKFQ IPPNAELKYE VQLKSFEKAK ESWEMSSEEK LEQSTIAKER ENSTTRP00000005025/1-458 FGSVGKEKFQ IPPNAELKYE VQLKSFEKAK ESWEMSSEEK LEQSTIVKER 351 400 ENSP00000001008/1-459 GTVYFKEGKY KQALLQYKKI VSWLEYESSF SNEEAQKAQA LRLASHLNLA ENSBTAP00000009998/1-459 GTVYFKEGKY KQAVLQYKKI VSWLEYESSF SDEDAEKAQA LRLASHLNLA BACU003118/1-440 GTMYFKEGKY KQALLQYKKI VSWLEFESSF SNENTQKAQA LRLASHLNLA bmy_06797T0/1-522 GTMYFKDGKY KQALLQYKKI VSWLEFESSF SSADAQKAQA LRLASHLNLA ENSTTRP00000005025/1-458 GTMYFKEGKY KQALLQYKKI VSWLEFESSF SNEDAQKAQA LRLASHLNLA 401 450 ENSP00000001008/1-459 MCHLKLQAFS AAIESCNKAL ELDSNNEKGL FRRGEAHLAV NDFELARADF ENSBTAP00000009998/1-459 MCHLKLQAFS AAIENCNKAL ELDSNNEKGL FRRGEAHLAV NDFDLARADF BACU003118/1-440 MCHLKLQAFS AAIENCNKAL ELDSSNEKGL FRRGEAHLAV NDFDLARADF bmy_06797T0/1-522 MCHLKLHAFS AAIENCNKAL ELDSSNEKGL FRRGEAHLAV NDFDLARADF ENSTTRP00000005025/1-458 MCHLKLQAFS AAIENCNKAL ELDSNNEKGL FRRGEAHLAV NDFDLARADF 451 500 ENSP00000001008/1-459 QKVLQLYPNN KAAKTQLAVC QQRIRRQLAR EKKLYANMFE RLAEEENKAK ENSBTAP00000009998/1-459 QKVLQLYPSN KAAKAQLVVC QQRIRKQLEK EKKLYANMFE RLAEEETKAK BACU003118/1-440 QKLLQLYPSN KAAKAQLAVC QQRIRKQLER EKKLYANMFE RLAGEESKAK bmy_06797T0/1-522 QKLLQLYPSN KAAKAQLAVC QQRIRKQLER EKKLYANMFE RLAGEESKAK ENSTTRP00000005025/1-458 QKLLQLYPSN KAAKAQLAIC QQRIRKQLER EKKLYANMFE RLAGEESKAK 501 550 ENSP00000001008/1-459 AEASSGDHPT DTEMKEEQKS NTAGSQSQVE TEA ENSBTAP00000009998/1-459 ATVAAGDQPA DAEMRDEPKN DVAGGQPQVE AEA BACU003118/1-440 ATVAAGEQP- DAEMKDEQKK DVAGAQPQVE AEA bmy_06797T0/1-522 ATVTAGDQPA DTEMKDEQEN DVAGAQPQVE AEA ENSTTRP00000005025/1-458 AT-AAGNQPA DTEMKDEQKN DVAGGQPQVE AEA