KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:59 2014 Check: 00 .. Name: ENSP00000337501/1-281 Len: 317 Check: 5046 Weight: 1.00 Name: bmy_06795T0/1-231 Len: 317 Check: 4283 Weight: 1.00 Name: ENSBTAP00000010006/1-280 Len: 317 Check: 6332 Weight: 1.00 Name: ENSTTRP00000005090/1-218 Len: 317 Check: 9285 Weight: 1.00 Name: BACU003116/1-179 Len: 317 Check: 7850 Weight: 1.00 // 1 50 ENSP00000337501/1-281 MLFIFPLSLP WRPSCWKESC STGQRQAGRS REDSVTPPPS SPWPTPPAGA bmy_06795T0/1-231 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010006/1-280 ARYLFPLFFP PRRPSGQESR R--RDAAGAA EAGSTEGRTT QEPPARPKGA ENSTTRP00000005090/1-218 --------FP PLRPSGWESC R--QKPGGGS REDVARPLRS ---PRPAAGV BACU003116/1-179 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000337501/1-281 MSTKQEARRD EGEARTRGQE AQLRDRAHLS QQRRLKQATQ FLHKDSADLL bmy_06795T0/1-231 MSVRPDAPRE EGDAGDRGQE AEPRGRAS-S RQRQRRQATR FLHKDSADLL ENSBTAP00000010006/1-280 MSIRPEAPRE EGDAGDRGRE AELRGRARLS QQRRLRQATQ FLHKDSADLL ENSTTRP00000005090/1-218 MSVRPDAPRE EGDAGDRGQE AELRGRAS-S QQRQRRQATR FLHKDSADLL BACU003116/1-179 MSVRPDAPRE EGDAGDRGQE AEPRGRAS-S RQRQRRQATR FLHKDSADLL 101 150 ENSP00000337501/1-281 PLDSLKRLGT SKDLQPRSVI QRRL-VEGNP NWLQGEPPRM QDLIHGQESR bmy_06795T0/1-231 PLDGLKRLGT SKDW------ --------LK VHPPGARPSS PAKGKGDQT- ENSBTAP00000010006/1-280 PLDGLKRLGT SKDWQPHSVI QRRLVVEGSP GRPQGEPPRA QAPIHGQEST ENSTTRP00000005090/1-218 PLDGLKRLGT SKDWQPHNVI QRRL-VEGNP SRPQGEHPLV QAAIHGQETR BACU003116/1-179 PLDGLKRLGT SKDW------ ---------- ---------- ---------- 151 200 ENSP00000337501/1-281 RKTSRTEIPA LLVNCKCQDQ LLRVAVDTGT QYNRISAGCL SRLGLEKRVL bmy_06795T0/1-231 ---------- ---EISIQRT SLQTASTAER QMEQ---GS- ---RLGKRVL ENSBTAP00000010006/1-280 TKTSKPERPA LLVNCKCRDQ DLQVAVDTGT QYNQISAGCL SRLGLGKRVL ENSTTRP00000005090/1-218 RKTSKTERPA LLVNCKCQDQ VLQVAVDTGT HYNQISAGCL SRLGLGKRVL BACU003116/1-179 ---------- ------CQDQ VLQVAVDTGT HYNQISTGCL SRLGLGKRVL 201 250 ENSP00000337501/1-281 KASAGDLAPG PPTQVEQLEL QLGQETVVCS AQVV------ ---------- bmy_06795T0/1-231 KAPAGDLAPG PPAQVEPLEL QLGQATVVCS ARVVDALIIP KVLWPGVVGG ENSBTAP00000010006/1-280 KAPGGDLHPG PPALVEQLEL QLGQETVECS AQVV------ ---------- ENSTTRP00000005090/1-218 -APSGDLAPG SPAQVEQLEL QLGQATVACS AQVV------ ---------- BACU003116/1-179 KAPAGDLAPG PPAQVEPLEL QLGQATVACS AQVV------ ---------- 251 300 ENSP00000337501/1-281 ---------- ---------D AESPEFCLGL QTLLSLKCCI DLEHGVLRLK bmy_06795T0/1-231 AEKGQVLTGG QQHSQMVPAD VDSPELCLGL QTLLSLKCCI DLEHHVLRLK ENSBTAP00000010006/1-280 ---------- ---------D VESPELCLGL QTLLSLQCCI DLEHHVLRLK ENSTTRP00000005090/1-218 ---------- ---------- ---------- ---------- ---------- BACU003116/1-179 ---------- ---------D VESPELCLGL QTLLSLKCCI DLEHRVLRLK 301 350 ENSP00000337501/1-281 APFSELPFLP LYQEPGQ bmy_06795T0/1-231 APFPELPFLP LHQEPGQ ENSBTAP00000010006/1-280 APFSELPFLP LHQEPGQ ENSTTRP00000005090/1-218 ---------- ------- BACU003116/1-179 APFPELPFLP LHQEPGQ