KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:59 2014 Check: 00 .. Name: ENSP00000268057/1-519 Len: 519 Check: 3554 Weight: 1.00 Name: ENSBTAP00000010013/1-519 Len: 519 Check: 9724 Weight: 1.00 Name: ENSTTRP00000011163/1-516 Len: 519 Check: 7142 Weight: 1.00 Name: bmy_10991T0/1-275 Len: 519 Check: 393 Weight: 1.00 Name: BACU019854/1-494 Len: 519 Check: 6628 Weight: 1.00 // 1 50 ENSP00000268057/1-519 MAEERVATRT QFPVSTESQK PRQKKAPEFP ILEKQNWLIH LHYIRKDYEA ENSBTAP00000010013/1-519 MAEEKLSART QLPVSAESQK PVLKKAPEFP ILEKQNWLIH LYYIQKDYEA ENSTTRP00000011163/1-516 IALIWTAQRT QFPASAESLK PRLKKAPEFP ILEKQNWLIH LHYIRKDYEA bmy_10991T0/1-275 ---------- ---------- ---------- ---------- ---------- BACU019854/1-494 ---------- ---------- -----APEFP ILEKQNWLIH LHYIRKDYEA 51 100 ENSP00000268057/1-519 CKAVIKEQLQ ETQGLCEYAI YVQALIFRLE GNIQESLELF QTCAVLSPQS ENSBTAP00000010013/1-519 CKAVIKEQLQ ETHGLCEYAI YVQALIFRLE GNIQESLRLF QMCAFLSPQC ENSTTRP00000011163/1-516 CKDVIREQLQ ETQGLCEYAI YVQALICRLE GNIQESLELF QTCAVLSPQS bmy_10991T0/1-275 ---------- ---------- ---------- ---------- ---------- BACU019854/1-494 CKDVIKEQLQ ETQGLCEYAI YVQALIFRLE GNIQESLELF QTCAVLSPQS 101 150 ENSP00000268057/1-519 ADNLKQVARS LFLLGKHKAA IEVYNEAAKL NQKDWEISHN LGVCYIYLKQ ENSBTAP00000010013/1-519 ADNLKQVARS LFLLGKHKAA IEVYNEAAKL NQKDWEICHN LGVCYIYLKQ ENSTTRP00000011163/1-516 ADNLKQVARS LFLLGKHKAA TEVYNEAAKL NQKDWEICHN LGVCYIYLKQ bmy_10991T0/1-275 ---------- ---------- ---------- ---------- ---------- BACU019854/1-494 ADNLKQVARS LFLLGKHKAA TEVYNEAAKL NQKDWEICHN LGVCYIYLKQ 151 200 ENSP00000268057/1-519 FNKAQDQLHN ALNLNRHDLT YIMLGKIHLL EGDLDKAIEV YKKAVEFSPE ENSBTAP00000010013/1-519 FDKAQDQLHN ALHLNRHDLT YIMLGKIFLL KGDLDKAIEI YKKAVEFSPE ENSTTRP00000011163/1-516 LDKAQDQLHN ALHLNRHDLT YIMLGKIHLL EGDLDKAIEI YKKAVXXXXX bmy_10991T0/1-275 ---------- ---------- ---------- ---------- ---------- BACU019854/1-494 LDKAQDQLHN ALYLNRHDLT YIMLGKIHLL EGDLDKAIEI YKKAVDGVSG 201 250 ENSP00000268057/1-519 NTELLTTLGL LYLQLGIYQK AFEHLGNALT YDPTNYKAIL AAGSMMQTHG ENSBTAP00000010013/1-519 NTELLTTLGL LYLQLGIYQK AFEHLGNTLT YDPTNYKAIL AAGSMMQTHG ENSTTRP00000011163/1-516 XXXXXXXXXX XXXXLGIYQK AFEHLGNALT YDPTNYKAIL AAGSMMQTHG bmy_10991T0/1-275 ---------- ---------- ---------- ---------- ----MMQTHG BACU019854/1-494 SAQGVILWLL LFPKLGIYQK AFEHLGNALT YDPTNYKAIL AAGSMMQTHG 251 300 ENSP00000268057/1-519 DFDVALTKYR VVACAVPESP PLWNNIGMCF FGKKKYVAAI SCLKRANYLA ENSBTAP00000010013/1-519 DFDVALTKYK VVACAVIESP PLWNNIGMCF FGKKKYVAAI SCLKRANYLA ENSTTRP00000011163/1-516 DFDVALTKYR IVACAVPDSP PLWNNIGMCF FGKKKYVGAI S-LKRANYLA bmy_10991T0/1-275 DFDVALTKYR VVACAVPESP PLWNNIGMCF FGKKKYVAAI SCLKRANYLA BACU019854/1-494 DFDVALTKYR VVACAVPESP PLWNNIGMCF FGKKKYVAAI SCLKRANYLA 301 350 ENSP00000268057/1-519 PFDWKILYNL GLVHLTMQQY ASAFHFLSAA INFQPKMGEL YMLLAVALTN ENSBTAP00000010013/1-519 PLDWKILYNL GLVHLTMQQY ASAFHFLSAA INFQPKMGEL YMLLAVALTN ENSTTRP00000011163/1-516 -FDWKILYNL GLVHLTMQQY AS-FHFLSAA INFQPKMGEL YMLLAVALTN bmy_10991T0/1-275 PFDWKILYNL GLVHLTMQQY ASAFHFLSAA INFQPKMGEL YMLLAVALTN BACU019854/1-494 PFDWKILYNL GLVHLTMQQY ASAFHFLSAA INFQPKMGEL YMLLAVALTK 351 400 ENSP00000268057/1-519 LEDIENAKRA YAEAVHLDKC NPLVNLNYAV LLYNQGEKKN ALAQYQEMEK ENSBTAP00000010013/1-519 LEDSENAKRA YEEAVRLDKC NPLVNLNYAV LLYNQGEKRD ALAQYQEMEK ENSTTRP00000011163/1-516 LEDTENARRA YTEAVRLDKC NPLVNLNYAV LLYNQGEERG ALAQYQEMEK bmy_10991T0/1-275 LEDTENARRA YAEAVRLDKC NPLVNLNYAV LLYNQGEERG ALAQYQEMEK BACU019854/1-494 REDTENARRA YAEAVRLDKC NPLVNLNYAV LLYNQGEERG ALAQYQEMEK 401 450 ENSP00000268057/1-519 KVSLLKDNSS LEFDSEMVEM AQKLGAALQV GEALVWTKPV KDPKSKHQTT ENSBTAP00000010013/1-519 KVNLLKYSSS LEFDPEMVEV AQKLGAALQV GEALVWTKPV KDPKSKHQTA ENSTTRP00000011163/1-516 KVNLLKDSSS LEFDPEMVET AQKLGAALQV GEALVWTKPV KDPKSKQRTT bmy_10991T0/1-275 KVNLLKDSSS LEFDPEMVEM AQKLGAALQV GEALVWTKPV KDPKSKQRTT BACU019854/1-494 KVNLLKDSSS LEFDPEMVEM AQKLGAALQV GEALVWTKPV KDPKSKQWTT 451 500 ENSP00000268057/1-519 STSKPASFQQ PLGSNQALGQ AMSSAAAYRT LPSGAGGTSQ FTKPPSLPLE ENSBTAP00000010013/1-519 STSKAAGFQQ PLGSNQALGQ AMSSAATCRK LSSGAGGTSQ LTKPPSLPLE ENSTTRP00000011163/1-516 STSKAASFQQ PLGSNQALGQ AMSSAAAYRK LPSGVGGTSQ LTKPPSLPLE bmy_10991T0/1-275 STSKAASFQQ PLGSNQALGQ AMSSAAAHRK LPSGAGGTAQ LTKPPSLPLE BACU019854/1-494 STSKAASFQQ PLGSNQALGQ AMSSAAAHRK LPSGAGGTSQ LTKPPSLPLE 501 550 ENSP00000268057/1-519 PEPAVESSPT ETSEQIREK ENSBTAP00000010013/1-519 PEPTVEAQPT EASAQTREK ENSTTRP00000011163/1-516 REPTVEAQPT EASAQIREK bmy_10991T0/1-275 PEPTVEAQPT EASAQITEK BACU019854/1-494 PESTVEEQPT EASAQITEK