KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:03 2014 Check: 00 .. Name: ENSP00000268043/1-641 Len: 745 Check: 5211 Weight: 1.00 Name: ENSBTAP00000010047/1-653 Len: 745 Check: 3 Weight: 1.00 Name: bmy_15375T0/1-667 Len: 745 Check: 3358 Weight: 1.00 Name: ENSTTRP00000011241/1-700 Len: 745 Check: 7498 Weight: 1.00 Name: BACU001057/1-517 Len: 745 Check: 6994 Weight: 1.00 // 1 50 ENSP00000268043/1-641 ---------- --MLSGIEAA AGEYEDSELR CRVAVEELSP GGQPRRRQAL ENSBTAP00000010047/1-653 LRSFCRPAEA AAMLSGTQAA AAECEDGELR CRVAVEELSP GGQPRRRQSL bmy_15375T0/1-667 ---------- --MLSGTEAA AAECADAELR CRVAVEELSP GGQPRRRQAL ENSTTRP00000011241/1-700 ---------- --MLSGTQAV AAECADAELR CRVAVEELSP GGQPRRRQAL BACU001057/1-517 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000268043/1-641 RTAELSLGRN ERRELMLRLQ APGPAGRPRC FPLRAARLFT RFAEAGRSTL ENSBTAP00000010047/1-653 RTAELSLGRN ERRELMLRLQ APGPAGRPRC FPVRAARLFT RFAAAGRSTL bmy_15375T0/1-667 RTAELRLGRN ERRELMLRLQ APGPAGRPRC FPLRAARLFT RFAASGRSTL ENSTTRP00000011241/1-700 RTAELRLGRN ERRELMLSLQ APGPAGRPRC FPLRAARLFT RFAASGRSTL BACU001057/1-517 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000268043/1-641 RLPAHDTPGA GAVQLLLSDC PPDRLRRFLR TLRLKLAAAP GPGPASARAQ ENSBTAP00000010047/1-653 RFPADSTPRA SAVQLLLSDC PPDRLRRFLH TLRLKLAAAP GPGPASARTQ bmy_15375T0/1-667 RLPADGAPRT GAVQLLLSDC PPDRLRRFLR TLRLKLAAAP GPGPASARTQ ENSTTRP00000011241/1-700 RLPADGAPRT GAVQLLLSDC PPDRLRRFLR TLRLKLAAAP GPGPASARTQ BACU001057/1-517 ---------- ---------- MPTLLSLFVR VL-------- --------AQ 151 200 ENSP00000268043/1-641 LLGPRPRDFV TISPVQPEER RLRAATRVPD TTLVKRPVEP QAGAEPSTEA ENSBTAP00000010047/1-653 LLGPRPRDFI SISPVQPEEL RRAAATRVTD TTPVKRPTEP RAGAKPRTEV bmy_15375T0/1-667 LLGPRPRDFV TISPVQPEEL RRAAATCVTH STPVKQPTEP RSGAKPSTEV ENSTTRP00000011241/1-700 LLGPRPRDFV TISPVQPEEL RRAAATWVTD STPVKQPTEP RSGAKPSTEV BACU001057/1-517 LLGPRPRDFV TISPVQPEEL RRAAATCVTD STPVKQPTEP RSGAKPSTEV 201 250 ENSP00000268043/1-641 PRWPLPVKRL SLPSTKPQLS EEQAAVLRAV LKGQSIFFTG SAGTGKSYLL ENSBTAP00000010047/1-653 TRWPLPVKRL RLPPTKPELS KEQAAVLRAV LKGQSIFFTG SAGTGKSYLL bmy_15375T0/1-667 RRWPLPVKKL SLPPTKPELS REQAAVLRVV LKGQSIFFTG SAGTGKSYLL ENSTTRP00000011241/1-700 PRWP-PVKKL SLPPTKPEL- REQAAVLRVV LKGQSIFFTG SAGTGKSYLL BACU001057/1-517 RRWPLPVKKL SLPPTKPQLS REQAAVLRVV LKGQSVFFTG SAGTGKSYLL 251 300 ENSP00000268043/1-641 KRILGSLPPT GTVATASTGV AACHIGGTTL HAFAGIGSGQ APLAQCVALA ENSBTAP00000010047/1-653 KRILGSLPPT GTVATASTGV AACHIGGTTL HAFAGIGSGQ APLAQCVALA bmy_15375T0/1-667 KRILGSLPPT GTVATASTGV AACHIGGTTL HAFAGIGSGQ APLAQCVALA ENSTTRP00000011241/1-700 KRILGSLPPT GTVATASTGV AACHIGGTTL HAFAGIGSGQ APLAQCVALA BACU001057/1-517 KRILGSLPPT GTVATASTGV AACHIGGTTL HAFAGIGSGH APLAQCVALA 301 350 ENSP00000268043/1-641 QRPGVRQGWL NCQRLVIDEI SMVEADLFDK LEAVARAVRQ QNKPFGGIQL ENSBTAP00000010047/1-653 QRPGVRQGWL NCQRLVIDEI SMVEADLFDK LEAVARAVRQ QNKPFGGIQL bmy_15375T0/1-667 QRPGVRQGWL NCQRLVIDEI SMVEADLFDK LEAVARSVWA VRTGFWW--- ENSTTRP00000011241/1-700 QRPGVRQGWL NCQRLVIDEI SMVEADLFDK LEAVARAVRQ QNKPFGGIQL BACU001057/1-517 QRPGVRQGWL TCQRLVIDEI SMVEADLFDK LEAVARAVRQ QNKPFGGIQL 351 400 ENSP00000268043/1-641 IICGDFLQLP PVTKGSQPP- ---------- ---------- ----RFCFQ- ENSBTAP00000010047/1-653 IICGDFLQLP PVTKGSQLP- ---------- ---------- ----QFCFQ- bmy_15375T0/1-667 --SSMWNSLT PVPKAPHAPL QSCPAAEQAI RRDPAYHLWG LPAAAACNQG ENSTTRP00000011241/1-700 IICGDFLQLP PVTKGSQPP- ---------- ---------- ----QFCFQ- BACU001057/1-517 IICGDFLQLP PVTKGSQPP- ---------- ---------- ----QFCFQ- 401 450 ENSP00000268043/1-641 -----SKSWK RCVPVTLELT KVWRQADQTF ISLLQAVRLG RCSDEVTRQL ENSBTAP00000010047/1-653 -----AKSWR RCVPVTLELT EVWRQTDKTF ISLLQAVRLG RCSDEVTRQL bmy_15375T0/1-667 IPAPAAKSWR RCVPVTLELT EVWRQTDETF ISLLQAVRLG RCSDEVTRQL ENSTTRP00000011241/1-700 -----AKSWR RCVPVTLELT EVWRQTDKTF ISLLQAVRLG RCSDEVTRQL BACU001057/1-517 -----AKSWR RCVPVTLELT EVWRQTDETF ISLLQAVRLG RCSDEVTRQL 451 500 ENSP00000268043/1-641 QATASHKVGR DGIVATRLCT HQDDVALTNE RRLQELPGKV HRFEAMDSNP ENSBTAP00000010047/1-653 RATAAHKVGR DGIVATRLCT HQDDVALTNE RQLQELPGEV HSFEAMDSDP bmy_15375T0/1-667 RATAAHRVGR DGIVATRLCT HQDDVALTNE RQLQKLPGEV HSFEAMDSDP ENSTTRP00000011241/1-700 RATAAHRVGR DGIVATRLCT HQDDVALTNE RQLQKLPGEV HSFEAMDSDP BACU001057/1-517 RATAAHRVGR DGIVATRLCT HQDDVALTNE RQLQKLPGEV HSFEAMDSDP 501 550 ENSP00000268043/1-641 ELASTLDAQC PVSQLLQLKL GAQVMLVKNL SVSRGLVNGA RGVVVGFEAE ENSBTAP00000010047/1-653 EQARTLDAQC PVSQLLQLKL GAQVMLVKNL AVSRGLVNGA RGVVVGFEAE bmy_15375T0/1-667 EQARTLDAQC PVSQLLQLKL GAQVMLVKNL AVSRGLVNGA RGVVVGFEAE ENSTTRP00000011241/1-700 EQARTLDAQC PVSQLLQLKL GAQVMLVKNL AVSRGLVNGA RGVVVGFEAE BACU001057/1-517 EQARTLDAQC PVSQLLQLKL GAQVMLVKNL AVSRGLVNGA RGVVVGFEAE 551 600 ENSP00000268043/1-641 GRGLPQVRFL CGVTEVIHAD RWTVQATGGQ LLSRQQLPLQ LAWAMSIHKS ENSBTAP00000010047/1-653 GRGLPQVRFL CGVTEVIRAD RWTVQTTGGQ LLSRQQLPLQ LAWAISIHKS bmy_15375T0/1-667 GRGLPQVRFL CGVTEVIRAD RWMVQATGGR LLSRQQLPLQ LAWAISIHKS ENSTTRP00000011241/1-700 GRGLPQVRFL CGVTEVIRAD RWMVQATGGR LLSRQQLPLQ LAWAISIHKS BACU001057/1-517 GRGLPQVRFL CGVTEVIRAD RWMVQATGGR LLSRQQLPLQ LAWAISIHKS 601 650 ENSP00000268043/1-641 QGMTLDCVEI SLGRVFASGQ AYVALSRARS LQGLRVLDFD PMAVRCDPRV ENSBTAP00000010047/1-653 QGMSLDCVEM SLGRVFASGQ AYVALSRARS LQGLRVLDFD PMVVRCDPRV bmy_15375T0/1-667 QGMSLDCVEI SLGRVFASGQ AYVALSRARS LQGLCVLDFD PMVVRCDPHV ENSTTRP00000011241/1-700 QGMSLDCVEI SLGRVFASGQ AYVALSRARS LQGLCVLDFD PMVIRCDPRV BACU001057/1-517 QGMSLDCVEI SLGRVFASGQ AYVALSRARS LQGLCVLDFD PMVVRCDPRV 651 700 ENSP00000268043/1-641 LHFYATLRRG RSLSL----- ---------- ---------- ---------- ENSBTAP00000010047/1-653 LSFYATLWRD RALSL----- ---------- ---------- ---------- bmy_15375T0/1-667 LSFYATLRQD RGLSL----- ---------- ---------- ---------- ENSTTRP00000011241/1-700 LNFYATLRQD RGLSLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001057/1-517 LSFYATLRQD RGLSL----- ---------- ---------- ---------- 701 750 ENSP00000268043/1-641 ---------- ESPDDDEAAS DQENMDPIL- ---------- ----- ENSBTAP00000010047/1-653 ---------- ESPDDEEGTS DQENVDPNL- ---------- ----- bmy_15375T0/1-667 ---------- ESPDDDEAAS DQENVDPNL- ---------- ----- ENSTTRP00000011241/1-700 XXXXXXXXXX XSPAQARANT LLSLTEHALQ TVCLSTLLFR SRVEY BACU001057/1-517 ---------- ESPDDDEAAS DQENVDPNL- ---------- -----