KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:05 2014 Check: 00 .. Name: ENSTTRP00000000985/1-384 Len: 463 Check: 7617 Weight: 1.00 Name: ENSP00000386272/1-406 Len: 463 Check: 1650 Weight: 1.00 Name: ENSBTAP00000010065/1-463 Len: 463 Check: 758 Weight: 1.00 Name: bmy_07252T0/1-380 Len: 463 Check: 5970 Weight: 1.00 Name: BACU010085/1-312 Len: 463 Check: 8537 Weight: 1.00 // 1 50 ENSTTRP00000000985/1-384 ---------- ---------- ---------- --MKQA---- ---------- ENSP00000386272/1-406 ---------- ---------- ---------- --MKQA---- ---------- ENSBTAP00000010065/1-463 MGYPGQRPVI PPQSHRDDRE TLVSEHKHKG KTCRQSAAVF NVVNSIIGSG bmy_07252T0/1-380 MGYQGQRPVI PPQSHLDDRE TLVSEHKHEG KTCRQS---- ---------- BACU010085/1-312 MGYQGQRPVI PPQSHLDDRE TLVSEHKHKG KTCRQS---- ---------- 51 100 ENSTTRP00000000985/1-384 ---------- -GFPLGILLL FWVSYVTDFS LVLLIKGGAL SGTDTYQSLV ENSP00000386272/1-406 ---------- -GFPLGILLL FWVSYVTDFS LVLLIKGGAL SGTDTYQSLV ENSBTAP00000010065/1-463 IIGLPYSMKQ AGFPLGILLL FWVSYVTDFS LILLIKGAAL SGTDTYQSLV bmy_07252T0/1-380 ---------- ---------- -----AAVFN VVNSIIGSGI IGKDECE--- BACU010085/1-312 ---------- ---------- -----AAVFN VVNSIIGSGI IGKDECE--- 101 150 ENSTTRP00000000985/1-384 NKTFGFPGYL LLSVLQFLYP FI-------- ---------- ----XXXXXX ENSP00000386272/1-406 NKTFGFPGYL LLSVLQFLYP FIAMISYNII AGDTLSKVFQ RIPGVDPENV ENSBTAP00000010065/1-463 NRTFGFPGYL LLSVLQFLYP FIAMISYNII TGDTLSKVFQ RIPGVDPENL bmy_07252T0/1-380 ---------- ----IEY--- ---------- ---------- ----FDPENL BACU010085/1-312 ---------- ----IEY--- ---------- ---------- ----FDPENL 151 200 ENSTTRP00000000985/1-384 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ISLISTVLTT LILGIVMARV ENSP00000386272/1-406 FIGRHFIIGL STVTFTLPLS LYRNIAKLGK VSLISTGLTT LILGIVMARA ENSBTAP00000010065/1-463 LIGRHLIIVL STVVFTLPLS LYRDIAKLGK ISLISTVLTT LILGIVVARG bmy_07252T0/1-380 LIGHHFIIVL STVAFTLPLS LYRDIAKLGK ISLISTVLTT LILGIVMARV BACU010085/1-312 LIGHHFIIVL STVAFTLPLS LYRDIAKLGK ISLISTVLTT LILGIVMARV 201 250 ENSTTRP00000000985/1-384 VSLGPHIPKT EDAWIFAKPN AIQAVGVMSF AFICHHNCFL VYGSLEEPTV ENSP00000386272/1-406 ISLGPHIPKT EDAWVFAKPN AIQAVGVMSF AFICHHNSFL VYSSLEEPTV ENSBTAP00000010065/1-463 VSLGPHIPKT EDAWIFAKPN AVQAVGVMSF AFICHHNCFL VYGSLEEPTV bmy_07252T0/1-380 VSLGPHIPKT EDAWTFAKPS AIQAVGVMSF AFICHHNCFL VYGSLEEPTV BACU010085/1-312 VSLGPHIPKT EDAWTFAKPS AIQAVGVMSF AFICHHNCFL VYGSLEEPTV 251 300 ENSTTRP00000000985/1-384 AKWSRIIHVS TLISVFISIF FATCGXXXXX XXXXXDLFEN YCRNDDLVTF ENSP00000386272/1-406 AKWSRLIHMS IVISVFICIF FATCGYLTFT GFTQGDLFEN YCRNDDLVTF ENSBTAP00000010065/1-463 AKWSHIIHVS TLISVFISIL FATCGYLTFT GYTQGDLFEN YCRNDDLVTF bmy_07252T0/1-380 AKWSRVIHVS TLISVFISIL FATCGYLTFT GYTQGDLFEN YCRNDDLVTF BACU010085/1-312 AKWSRIIHVS TLISVFISIL FATCGYLTFT GYTQGDLFEN YCRNDDLVTF 301 350 ENSTTRP00000000985/1-384 GRFCYGVTVI LTYPIECFVT REVIANVFFG GTLSSVLHII ITVVIITVAT ENSP00000386272/1-406 GRFCYGVTVI LTYPMECFVT REVIANVFFG GNLSSVFHIV VTVMVITVAT ENSBTAP00000010065/1-463 GRFCYGVTVI LTYPIECFVT REVIANVFFG GNLSSVCHII VTVVIITVAT bmy_07252T0/1-380 GRFCYGVTVI LTYPIECFVT REVIANVFFG GTLSSVFHII ITVVIITVAT BACU010085/1-312 GRFCYGVTVI LTYPIECFVT REVIANVFFG GTLSSVFHII ITVVIITVAT 351 400 ENSTTRP00000000985/1-384 LVSLLIDCLG IVLELNGVLC AAPLIFIIPS ACYLKLSEEP RTHSDKIMSC ENSP00000386272/1-406 LVSLLIDCLG IVLELNGVLC ATPLIFIIPS ACYLKLSEEP RTHSDKIMSC ENSBTAP00000010065/1-463 LVSLLIDCLG IVLELNGVLC AAPLIFIIPS ACYLKLSEEP RTHSDKIMSC bmy_07252T0/1-380 LVSLLIDCLG IVLELNGVLC ATPLIFIIPS ACYLKLSEEP RTHSDKIMSC BACU010085/1-312 LVSLLIDCLG IVLELNAFLC ---------- ---------- ---------- 401 450 ENSTTRP00000000985/1-384 VMLPIGAVVM AVGFVMAVTN PQDCTHGQEM FYCFPDNFSL TNISISHFQL ENSP00000386272/1-406 VMLPIGAVVM VFGFVMAITN TQDCTHGQEM FYCFPDNFSL TNTSESHVQQ ENSBTAP00000010065/1-463 VMLPIGAVVM AVGFVMAVTS PQDCSHGQEM FYCSPDNFSL TNISISHLQL bmy_07252T0/1-380 VMLPIGAVVM AVGFVMAVTN PQDCTHGQEM FYCFPDNFSL TNISISRFQL BACU010085/1-312 ---------- ---------- --------NL YCCFPN---- ----LGPHHI 451 500 ENSTTRP00000000985/1-384 TTQLSILNVS IFQ ENSP00000386272/1-406 TTQLSTLNIS IFQ ENSBTAP00000010065/1-463 TTQLSILNVS IFQ bmy_07252T0/1-380 TTQLSILNVS IFQ BACU010085/1-312 TSELVL--AF CFN