KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:05 2014 Check: 00 .. Name: ENSP00000347134/1-596 Len: 596 Check: 194 Weight: 1.00 Name: ENSBTAP00000010066/1-536 Len: 596 Check: 7487 Weight: 1.00 Name: ENSTTRP00000013722/1-556 Len: 596 Check: 3240 Weight: 1.00 Name: bmy_16234T0/1-542 Len: 596 Check: 1013 Weight: 1.00 Name: BACU001780/1-542 Len: 596 Check: 1649 Weight: 1.00 // 1 50 ENSP00000347134/1-596 MEPELAAQKQ PRPRRRSRRA SGLSTEGATG PSADTSGSEL DGRCSLRRGS ENSBTAP00000010066/1-536 ----MVAHDE ---------- ----VGG--- ---------- ---------- ENSTTRP00000013722/1-556 MEPELAAQEQ SRPRRRSRRA SGLSAGGAAE PSADTPGPGS DGRYSLQRGS bmy_16234T0/1-542 ----MVAHDE ---------- ----VGG--- ---------- ---------- BACU001780/1-542 ----MVAHDE ---------- ----VGG--- ---------- ---------- 51 100 ENSP00000347134/1-596 SFTFLTPGPN WDFTLKRKRR EKDDDVVSLS SLDLKEPSNK RVRPLARVTS ENSBTAP00000010066/1-536 ---------- ---LLPIKRT IRVLDVNNQS FREQEEPSNK RVRPLARVTS ENSTTRP00000013722/1-556 SFTFLTPGPH WDFTLKRKRR AKDDDVISLS SLDLKEPSNK RVRPLARVTS bmy_16234T0/1-542 ---------- ---LLPIKRT IRVLDVNNQS FREQEEPSNK RVRPLARVTS BACU001780/1-542 ---------- ---LLPIKRT IRVLDVNNQS FREQEEPSNK RVRPLARVTS 101 150 ENSP00000347134/1-596 LANLISPVRN GAVRRFGQTI QSFTLRGDHR SPASAQKFSS RSTVPTPAKR ENSBTAP00000010066/1-536 LANLISPVRN GAVRRFGQTI QSFTLRGDSR SPASAQKFSS RSTVPVPAKR ENSTTRP00000013722/1-556 LANLISPVRN GAVRRFGQTI QSFTLRGDNR SPASAQKLSS RSTVPAPTKR bmy_16234T0/1-542 LANLISPVRN GAVRRFGQTI QSFTLRGDNR SPASAQKLSS RSTVPAPAKR BACU001780/1-542 LANLISPVRN GAVRRFGQTI QSFTLRGDNR SPASAQKLSG RSTVPAPAKR 151 200 ENSP00000347134/1-596 RSSALWSEML DITMKESLTT REIRRQEAIY EMSRGEQDLI EDLKLARKAY ENSBTAP00000010066/1-536 RSSALWSETL DGSMKQSLTS REIRRQEAIY EMSRGEQDLI EDLKLARKAY ENSTTRP00000013722/1-556 RSSALWSEML DVNMKQSLTS REIKRQEAIY EMSRGEQDLI EDLKLARKAY bmy_16234T0/1-542 RSSALWSEML DVSMKQSLTS REIKRQEAIY EMSRGEQDLI EDLKLARKAY BACU001780/1-542 RSSALWSEML DVSMKQSLTS REIKRQEAIY EMSRGEQDLI EDLKLARKAY 201 250 ENSP00000347134/1-596 HDPMLKLSIM SEEELTHIFG DLDSYIPLHE DLLTRIGEAT KPDGTVEQIG ENSBTAP00000010066/1-536 HDPMLKLSIM SEEELTHIFG DLDAYIPLHE DLLERIGEAT KPGGTVEHVG ENSTTRP00000013722/1-556 HDPMLKLSIM SEEELTQIFG DLDAYIPLHE DLLARIGEAT KPGGTVEQIG bmy_16234T0/1-542 HDPMLKLSIM SEEELTQIFG DLDAYIPLHE DLLARIGEAT KPGGTVEQIG BACU001780/1-542 HDPMLKLSIM SEEELTQIFG DLDAYIPLHE DLLARIGEAT KPGGTVEQIG 251 300 ENSP00000347134/1-596 HILVSWLPRL NAYRGYCSNQ LAAKALLDQK KQDPRVQDFL QRCLESPFSR ENSBTAP00000010066/1-536 QILVNWLPGL NAYKGYCSNQ LAAKALLDQK KQDPRVQDFL QRCLESPFSR ENSTTRP00000013722/1-556 HILVNWLPGL NAYKGYCSNQ LAAKALLDQK KQDPRVQDFL QRCLESPFSR bmy_16234T0/1-542 HILVNWLPGL NAYKGYCSNQ LAAKALLDQK KQDPRVQDFL QRCLESPFSR BACU001780/1-542 HILVNWLPGL NAYKGYCSNQ LAAKALLDQK KQDPRVQDFL QRCLESPFSR 301 350 ENSP00000347134/1-596 KLDLWSFLDI PRSRLVKYPL LLKEILKHTP KEHPDVQLLE DAILIIQGVL ENSBTAP00000010066/1-536 KLDLWSFLDI PRSRLVKYPL LLKEILRHTP KDHPDVQLLE KAILIIQGVL ENSTTRP00000013722/1-556 KLDLWSFLDI PRSRLVKYPL LLKEILRHTP KDHSDVQLLE EATLIMKQV- bmy_16234T0/1-542 KLDLWSFLDI PRSRLVKYPL LLKEILRHTP KDHSDVQLLE EAILIIQGVL BACU001780/1-542 KLDLWSFLDI PRSRLVKYPL LLKEILRHTP KDHSDVQLLE EAILIIQGVL 351 400 ENSP00000347134/1-596 SDINLKKGES ECQYYIDKLE YLDEKQRDPR IEASKVLLCH GELRSKSGHK ENSBTAP00000010066/1-536 SDINVKKGES ECQYYIDKLE YLEEKQKDPR IESSKVLLCH GELKNKNGHK ENSTTRP00000013722/1-556 ---------- ---YKINIIL KLD------- ---------- ---------K bmy_16234T0/1-542 SDINLKKGES ECQYYIDKLE YLDEKQKDPR IEASKVLLCH GELKNKNGHK BACU001780/1-542 SDINLKKGES ECQYYIDKLE YLDEKQKDPR IEASKVLLCH GELKNKNGHK 401 450 ENSP00000347134/1-596 LYIFLFQDIL VLTRPVTRNE RHSYQVYRQP IPVQELVLED LQDGDVRMGG ENSBTAP00000010066/1-536 LHIFLFQDIL VLTRPVTRNE RHSYQVYRQP IPVQELVLED LQDGDVRMGG ENSTTRP00000013722/1-556 LYIFLFQDIL VLTRPVTRNE RHSYQVYRQP IPIQELVLED LQDGDVRMGG bmy_16234T0/1-542 LYIFLFQDIL VLTRPVTRNE RHSYQVYRQP IPIQELVLED LQDGDVRMGG BACU001780/1-542 LYIFLFQDIL VLTRPVTRNE RHSYQVYRQP IPIQELVLED LQDGDVRMGG 451 500 ENSP00000347134/1-596 SFRGAFSNSE KAKNIFRIRF HDPSPAQSHT LQANDVFHKQ QWFNCIRAAI ENSBTAP00000010066/1-536 SFRGAFGNSD KAKNIFRVRF QDPCLGQSHT LQANDVFHKQ QWFSCIRNAI ENSTTRP00000013722/1-556 SFRGAFSNSD KAKNIFRVRF QDPSPGQSHT LQANDVFHKQ QWFNCIRAAM bmy_16234T0/1-542 SFRGAFSNSD KAKNIFRVRF QDPSPGQSHT LQANDVFHKQ QWFNCIRAAM BACU001780/1-542 SFRGAFSNSD KAKNIFRVRF QDPSPGQSHT LQANDVFHKQ QWFNCIRAAM 501 550 ENSP00000347134/1-596 APFQSAGSPP ELQGLPELHE ECEGNHPSAR KLTAQRRAST VSSVTQVEVD ENSBTAP00000010066/1-536 APFQQATGPS EL------HQ ECRENPTTTS NARAQRQASM VSSMTQGKAD ENSTTRP00000013722/1-556 APSRQATSPS ELQGLPEPHE EYGENCPPAS NARAQRRAST ASSVTQVEVD bmy_16234T0/1-542 APSRQATSPS ELQGLPEPHE EYGENCPPAS NARAQRRAST ASSVTQVEVD BACU001780/1-542 APSRQATSPS ELQGLPEPHE EYGENCPPAS NARAQRRAST ASSVTQVEVD 551 600 ENSP00000347134/1-596 ENAYRCGSGM QMAEDSKSLK THQTQPGIRR ARDKALSGGK RKETLV ENSBTAP00000010066/1-536 GDAAECGAPV HTADHTTGMK APRAQTSLRK ARDRAQVGGK RKETLV ENSTTRP00000013722/1-556 GDASESGTPV HTADNAKGTK APRAQAGLRK ARDKAQVGGK RKETLV bmy_16234T0/1-542 GDASESGTPV HTADDAKGMK APRAQAGLRK ARDKAQVGGK RKETLV BACU001780/1-542 GDASKSVTPV HTADDAKGMK APRAQAGLRK ARDKAQVGGK RKETLV