KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:05 2014 Check: 00 .. Name: BACU014110/1-159 Len: 504 Check: 2009 Weight: 1.00 Name: ENSP00000295049/1-501 Len: 504 Check: 1904 Weight: 1.00 Name: bmy_04434T0/1-356 Len: 504 Check: 4908 Weight: 1.00 Name: ENSTTRP00000003208/1-501 Len: 504 Check: 139 Weight: 1.00 Name: ENSBTAP00000010067/1-503 Len: 504 Check: 1429 Weight: 1.00 // 1 50 BACU014110/1-159 ---------- ---------- ---------- ---------- ---------- ENSP00000295049/1-501 MGCGLRKLED PDDSSPGKIF STLKRPQVET KTEFAYEYVL LDFTLQASSN bmy_04434T0/1-356 ----MRK--- ---------- ---------- --------SL FAFDISASPN ENSTTRP00000003208/1-501 MGCGLRKLED PDDSSPGKIF STLKRPQVET KTEFAYEYVL LDFTLQASPN ENSBTAP00000010067/1-503 MGCGLRKLED PDDSSPGKIF STLKRPQVET KTEFAYEYVL LDFTLQASPN 51 100 BACU014110/1-159 ---------- ---------- ---------- -----MGRE- ---------- ENSP00000295049/1-501 PEVIKINSIL DIVTKVENYY LKGYIVGAIH PVIQPVGQRK HLPASYLYRV bmy_04434T0/1-356 PEVIKINSIL DIVTKVEDYY LKGYIVGAIH PVIQPVGQQK HLPASYLYRV ENSTTRP00000003208/1-501 PEVIKINSIL DIVTKVEDYY LKGYIVGAIH PVIQPVGQQK HLPASYLYRV ENSBTAP00000010067/1-503 PEVIKINSIL DIVTKVEDYY LKGYIVGAIH PVIQPVGQQK HLPASYLYRV 101 150 BACU014110/1-159 ---------- ---------- ---------- ---------- ---------- ENSP00000295049/1-501 VLLRLKLSPK NSAAPSGQRR PRLVIEECPL TSEAQTNDAA KELIEKINVA bmy_04434T0/1-356 VLSRLKLSTK HSTAPSGQRR PRLVIEECPL TFETQTNDVA KELIEKINGG ENSTTRP00000003208/1-501 VLSRLKLSTK HSTAPSGQRR PRLVIEECPL TFETQTNDVA KELIEKINGG ENSBTAP00000010067/1-503 VLSRLKLSTK HSTAPSGQRR PRLVIEECPL TYETQTNDVT KELIEKVNVA 151 200 BACU014110/1-159 ---------- ------ATKW CE-------- ---------- ---------- ENSP00000295049/1-501 AKRGMKFVGF ISQHYSPSKF CNGTNHDGDI ESMLHVRHGS DENCRSWNEG bmy_04434T0/1-356 AKRGMKFVGF ISQHCPPLKF CNGTNXDGDT ESALHVRHSS EENCKIWNEG ENSTTRP00000003208/1-501 AKRGMKFVGF ISQHCPPLKF CNGTNQDGDT ESALHVRHSS EENCKIWNEG ENSBTAP00000010067/1-503 AKRGMRFVGF ISQHYPPLKF CNGTNLDGDI ESTLHVRRSP EENCKNWNEG 201 250 BACU014110/1-159 ---------- ---------- ---------- -----QRGE- ---------- ENSP00000295049/1-501 TLSGQSSESG IEEELHHESG QYQMEQNGSP TSSKSRKGE- --ASDNKLYT bmy_04434T0/1-356 TLSGQSSESG IEEERHHESG QCQMERDGSP SFSKSRKGE- ----DNKLYT ENSTTRP00000003208/1-501 TLSGQSSESG IEEELHHESG QCQMERDGSP SFSKSRKGE- --ASDNKLYT ENSBTAP00000010067/1-503 TLSGQSSESG IEEELHRESG QCQMERDGSP SFSKSRKGEE YLSSDNKLYT 251 300 BACU014110/1-159 ---------- ---------- ---------- ---------- RTFAWRAGSR ENSP00000295049/1-501 VFNAFDDDST SWAYQEGILS MKVTRKGSVI STLDADWLEL TTFYYKQGLS bmy_04434T0/1-356 VFNDFEDEST CWTYQEGILS MKVTRKGSVV STLDADWLEL TTFYYKQGLS ENSTTRP00000003208/1-501 VFNDFEDEST CWTYQEGILS MKVTRKGSVV STLDADWLEL TTFYYKQGLS ENSBTAP00000010067/1-503 VFNVFDDEST CWNYQEGILS MKVTRKGSVI STLDADWLEL TTFYYKQGLS 301 350 BACU014110/1-159 EREGWPCAGP GRGA------ ---------- ----GFGREA SREL------ ENSP00000295049/1-501 LIDSFVFWET SKGEHLPKSL EGFFIYEEEG SGVPGSSRKG NDAIVVEQWT bmy_04434T0/1-356 LIDSFVCWET SKGDHLPKSL EGFFIYEEEG SGVPGFSRKG NDAIVVEQWT ENSTTRP00000003208/1-501 LIDSFVCWET SKGDHLPKSL EGFFIYEEEG SGVPGFSRKG NDAIVVEQWT ENSBTAP00000010067/1-503 LIDSFVCWET SKGDQLSKSL EGVFIYEEEG SGVPGFSRKG NDAIVVEQWT 351 400 BACU014110/1-159 -----DQKDK TAPILLT--- ---------- ---------- -PGRQSLVF- ENSP00000295049/1-501 VIEGCEIKTD YGPLLHTLAE FGWLLTSVLP TPVLRHDSEG NLATKQIVFL bmy_04434T0/1-356 VIE--NQNAN TSQI------ ---------- ---------- -PAFSFLLFL ENSTTRP00000003208/1-501 VIEGCEIKTD YGPLLHTLAE FGWLLTSVLP TPILRHDSEG NLATKQVVFL ENSBTAP00000010067/1-503 VIEGCEIKTD YGPLLHTLAE FGWLLTSVLP TPILRHDSEG NLATKQVVFL 401 450 BACU014110/1-159 ---------- ---QRKGSRH VKGEDRSKVT SRSTGLDTAL SQPAEGRSPP ENSP00000295049/1-501 QRPVMWNSAA QTPDKKASRH IKGEDKNKAT SRSIGLDTTS SQPAESRHLP bmy_04434T0/1-356 ---------- ---------- --GKEK---- -----IELLF FVCLSGKR-- ENSTTRP00000003208/1-501 QRPVMWNSAT QTPERKGGRH VKGEDRSKVT SRSVGLDTAL SHPAEGWSPP ENSBTAP00000010067/1-503 QRPVMWNSAA QTPERKGSRH VKGEDRSKVP SRSVSLDTDL LQPAESRSPP 451 500 BACU014110/1-159 EARPLGPARE CGVKGKRPAR HSSFSGLSSG DSVLRETDDG QFDQEDGVTQ ENSP00000295049/1-501 EECRLSPSRE CWTKEGRLAQ HNSFSGFSSS DNVLRELDDG QFDQEDGVTQ bmy_04434T0/1-356 -ERPMKPSV- ---------- ---------- ---------- ---------- ENSTTRP00000003208/1-501 EARLLAPSRE CWMKEKRPAQ HSSFSGFSNS DSVLREIDDG QFDQEDGVTQ ENSBTAP00000010067/1-503 EECLLAPSRE CWMK-KRPAQ PSSFSGFSNS DSVLRELDDG QFDQEDGVTQ 501 550 BACU014110/1-159 VTCM ENSP00000295049/1-501 VTCM bmy_04434T0/1-356 ---- ENSTTRP00000003208/1-501 VTCM ENSBTAP00000010067/1-503 VTCM