KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:40:08 2014 Check: 00 .. Name: ENSBTAP00000010092/1-865 Len: 1018 Check: 826 Weight: 1.00 Name: ENSTTRP00000013861/1-592 Len: 1018 Check: 9173 Weight: 1.00 Name: bmy_11362T0/1-492 Len: 1018 Check: 7939 Weight: 1.00 Name: BACU008400/1-857 Len: 1018 Check: 934 Weight: 1.00 // 1 50 ENSBTAP00000010092/1-865 MAADVEGDVY VLVEHPFEYT GKDGRRVAIQ PNERYRLLRR STEHWWHVRS ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ---------- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 MAADVEGDVY VLVEHPFEYT GKDGRRVAIQ PNERYRLLRR STEHWWHVRS 51 100 ENSBTAP00000010092/1-865 EPGGRPFYLP AQYVRELPAL GHPAPAPPPP APLQGPAAPE PLAYDYRFMS ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ---------- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 EPGGRPFYLP AH-------- ---------- ---------- ---------- 101 150 ENSBTAP00000010092/1-865 ASAPSGPDGA PAEPRGRAGS LCGRARPGAA TQRRSLAPGS PACLYTRPAA ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ---------- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000010092/1-865 PVRPAQSLDD LARTAAPPAG LLGSGGGFKA CSVAGSWVCP RPLARSDSEN ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ---------- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 ---------- ---------- ---------- ---------- ------NSEN 201 250 ENSBTAP00000010092/1-865 VYEAIQDVRD PPTEQRPEQV PNPPHPAHPS WMAESRLSGP ESAKRPLCLS ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ---------- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 VYEAIQDVRG QPLEQHPEQV DDLPEPVYAN VERQPRATSP GAAA-AHGPG 251 300 ENSBTAP00000010092/1-865 PAWVYHFEAG TGRPYYYNPD TGVTTWESPF EATEGAASPA TSPASVGSHE ENSTTRP00000013861/1-592 ---------- ---------- TGVTTWESPF EAAEGAASPA TSPASVGSHE bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 SVWETHTDAG TGRPYYYNPD TGVTTWESPF EAAEGAASPA TSPASVGSHE 301 350 ENSBTAP00000010092/1-865 SLETEWGQYW DEESHRVFFY NSLTGETAWE DELEDQLEDE QEMQPGLGPS ENSTTRP00000013861/1-592 SLETEWGQYW DEESRRVFFY NPLTGETAWE DESEDQPEDE QEMQPGLSPG bmy_11362T0/1-492 ---------- ---------- ---------- ---------- --MQPGLSPG BACU008400/1-857 SLETEWGQYW DEESRRVFFY NPLTGETAWE DESEDQPEDE QEMQPGLSPG 351 400 ENSBTAP00000010092/1-865 ---NQRPPTP ETDY-DLLTS YPEEDYSPVG SFSEPGPASP FVTPPGWSCH ENSTTRP00000013861/1-592 SPRDQRPPTP ETDYPELLTS YPEEDYSPVG SFGEPGPASP LVTPPGWSCH bmy_11362T0/1-492 SPRDQRPPTP ETDYPELLTS YPEEDYSPVG SFGEPGPASP FVTPPGWSCH BACU008400/1-857 SPRDQRPPTP ETDYPELLTS YPEEDYSPVG SFGEPGPASP LVTPPGWSCH 401 450 ENSBTAP00000010092/1-865 VSPDGQTVYT NNITEEQWVR LENQHGKTYF YNPDDASVQW ALPQVPVPVP ENSTTRP00000013861/1-592 VSQDGXXXXX XXXXXXXXXX ---------- ---------- ---------X bmy_11362T0/1-492 VSQDGQTLYT NNFTQEQWMR LEDQHGKPYF YNPDDASVQW ELPQ--VPVP BACU008400/1-857 VSQDGQTLYT NNFTQEQWMR LEDQHGKPYF YNPDDASVQW ELPQ--VPVP 451 500 ENSBTAP00000010092/1-865 APRNSHKSNQ NSETPAQATP PEEK------ ---------- --------IK ENSTTRP00000013861/1-592 XXXSIRKSSQ DSETPAQASP PEEKIPGSEL GEARSWKEVS PAAAPAVGIK bmy_11362T0/1-492 APRSIRKSSQ DNETPAQASP PEEK------ ---------- --------IK BACU008400/1-857 APRSIRKSSQ DNETPAQASP PEEK------ ---------- --------IK 501 550 ENSBTAP00000010092/1-865 TLDKAGVLHR TKIVDKGKRL RKKHWSASWT VLEGGILTFF KDSKNSAASG ENSTTRP00000013861/1-592 TLDKAGVLHR TKTVDKGKRL RKKNWSASWT VLEGGILTFF KDSKTSTAGG bmy_11362T0/1-492 TLDKAGVLYR TKTVDKGKRL RKKNWSASWT VLEGGILTFF KDSKTSTAGG BACU008400/1-857 TLDKAGVLHR TKTVDKGKRL RKKNWSASWT VLEGGILTFF KDSKTSTAGG 551 600 ENSBTAP00000010092/1-865 LRQPSKLSTP EFTVDLKGAS LTWAPKDKSS KKNVLELRSR DGSEYLIQHD ENSTTRP00000013861/1-592 LRQPSKLSTP EYTVELKGAS LAWAPKDKSS KKNVLELRSR DGSEYLIQHD bmy_11362T0/1-492 LRQPSKLSTP EYTVELKGAS LAWAPKDKSS KKNVLE---- ---------- BACU008400/1-857 LRQPSKLSTP EYTVELKGAS LAWAPKDKSS KKNVLELRSR DGSEYLIQHD 601 650 ENSBTAP00000010092/1-865 SEAIISTWHS AITQGIQEMS ADLPPEEESE NSGVDFRSSE RLGSWQEDEP ENSTTRP00000013861/1-592 SEAIISTWHK AIAQGIQELS ADLPPEEESE SSTVDFGSSE RLGSWRDDEA bmy_11362T0/1-492 ---------- ---------S ADLPPEEESE SSSVDFGSSE RLGSWREDEA BACU008400/1-857 SEAIISTWHK AIAQGIQELS ADLPPEEESE SSSVDFGSSE RLGSWREDEA 651 700 ENSBTAP00000010092/1-865 RPGAAPSTPG PGGLEGDVSK VRQKLLRFLL RRPTLQSLRE KGYIKDQVFG ENSTTRP00000013861/1-592 RPGAAVPTPG HGGLESDLS- VRNKLRKFLL KRPTLQSLRE KGYIRD-VFG bmy_11362T0/1-492 RPGAAVPTPG PGGLESDLSK VRHKLRKFLL KRPTLQSLRE KGYIRDQVFG BACU008400/1-857 RPGAAVPTPG PGGLESDLSR VRHKLRKFLL RRPTLQSLRE KGYIRDQVFG 701 750 ENSBTAP00000010092/1-865 CPLAELCERE KSSVPRFVQQ SIRAVEARGL DIDGLYRISG NLATIQKLRY ENSTTRP00000013861/1-592 CALAVLXXXX XXXXXXXXXX XXXXXXXXXL DIDGLYRISG NLATIQKLRY bmy_11362T0/1-492 CALAVLCERE RSQVPRFVQQ CIRAVEARGL DIDGLYRISG NLATIQKLRY BACU008400/1-857 CALAVLCERE RSQVPRFVQQ CIRTVEARGL DIDGLYRISG NLATIQKLRY 751 800 ENSBTAP00000010092/1-865 KVDHDERLDL EDGHWEDVHV ITGALKLFFR ELPEPLFPFS HFRQFLAAIK ENSTTRP00000013861/1-592 KVDHDERLDL DDGRWEDVHV ITGALKLFFR ELPEPLFPFS HFPQFIAAIK bmy_11362T0/1-492 KVDHDERLDL DDGRWEDVHV ITGALKLFFR ELPEPLFPFS HFPQFIAAIK BACU008400/1-857 KVDHDERLDL DDGRWEDVHV ITGALKLFFR ELPEPLFPFS HFPQFIAAIK 801 850 ENSBTAP00000010092/1-865 LQDPATRFRC VRDLVRSLPA PNHDTLRVLF QHLCRVIEHG ERNRMSVQNV ENSTTRP00000013861/1-592 LQDQAQRSRC IQSLVRSLPA PNHDTMRLLF QHLCRVIEHG EQNRMSVQSV bmy_11362T0/1-492 LQDQAQRSRC VRNLVRSLPA PNHDTLRLLF QHLCRVIEHG EQNRMSVQSV BACU008400/1-857 LQDQAQRSRC VRNLVRSLPA PNHNTLRLLF QHLCRVIEHG EQNRMSVQSV 851 900 ENSBTAP00000010092/1-865 AIVFGPTLLR PETEEASMPM TMVFQNQVVE LILQQ--CSD I--------- ENSTTRP00000013861/1-592 AIVFGPTLLR PETEETSMPM TMVFQNQVVE LILQQ--CAD V--------- bmy_11362T0/1-492 AIVFGPTLLR PETEETSMPM TMVFQNQVVE LILQQ--CSD V--------- BACU008400/1-857 AIVFGPTLLR PETEETSMPM TMVFQNQIPQ VLQQPGICPD AALEKASGVH 901 950 ENSBTAP00000010092/1-865 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ---------- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU008400/1-857 LVAKSRGRAQ LSSSEIQLKG TVITKYQIRR DKRWKRQESQ PSYLLSGDRY 951 1000 ENSBTAP00000010092/1-865 ---------- ---------- ---------- ---------- ----FP---- ENSTTRP00000013861/1-592 ---------- ---------- ---------- ---------- ----FP---- bmy_11362T0/1-492 ---------- ---------- ---------- ---------- ----FP---- BACU008400/1-857 RQKFTEEGDN LCGHQRGTET ALQPYELKAG SPALTFLPAT PSQWFPVSRG 1001 1050 ENSBTAP00000010092/1-865 ---------- ---PH--- ENSTTRP00000013861/1-592 ---------- ---PH--- bmy_11362T0/1-492 ---------- ---PH--- BACU008400/1-857 QKTVIALIAR ALHPQGYI