KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:09 2014 Check: 00 .. Name: ENSP00000313169/1-733 Len: 868 Check: 2607 Weight: 1.00 Name: ENSTTRP00000002895/1-401 Len: 868 Check: 9790 Weight: 1.00 Name: ENSBTAP00000010098/1-686 Len: 868 Check: 1444 Weight: 1.00 Name: bmy_08323T0/1-433 Len: 868 Check: 3419 Weight: 1.00 Name: BACU017737/1-664 Len: 868 Check: 7952 Weight: 1.00 // 1 50 ENSP00000313169/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002895/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 ---------- ---------- ---------- ---------- ---------- bmy_08323T0/1-433 MGLVVSDAAG HSPSSPPQSF GTGEKKVSSW AVSSGPGGAA SSRENHPHTL BACU017737/1-664 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000313169/1-733 ---------- ---------- ---------- --------ML ARRQRDPLQA ENSTTRP00000002895/1-401 ---------- ---------- ---------- --------ML ARRQRDPLQS ENSBTAP00000010098/1-686 ---------- ---------- ---------- --------ML ARRQRDPLQS bmy_08323T0/1-433 PAPASRAGRR ARGDGVTFRC RRLGFPGDRR ELGAEAKEML ARRQRDPLQS BACU017737/1-664 ---------- ---------- ---------- --------ML ARRHRHPLQS 101 150 ENSP00000313169/1-733 LRRRNQELKQ QVDSLLSESQ LKEALEPNKR QHIYQRCIQL KQAIDENKNA ENSTTRP00000002895/1-401 LQRRNQELKQ QVDDLLSESR LKGALEASKR RDIYQRCIQL KQAIDENKNT ENSBTAP00000010098/1-686 LQRRNQELKQ QVDGLLFESR LKGALEASKR RDMYQRCIQL KQAIDENKNA bmy_08323T0/1-433 LQRRNQELKQ QVDDLLSESR LKGALEASKR RDIYQRCIQL KQAIDENKNA BACU017737/1-664 LQRRNQELKQ QVDDLLSESR LKGALETSKR RDIYQRCIQL KQTIDENKNA 151 200 ENSP00000313169/1-733 LQKLSKADES APVANYNQRK EEEHTLLDKL TQQLQGLAVT ISRENITEVG ENSTTRP00000002895/1-401 LQKLSKADEP APVGSYNQKK EEEHNLLDKL THQLQELAVS ISRENVTETG ENSBTAP00000010098/1-686 LQKLKKADEP APVGNYYQKK EEEHNLLDKL THQLQELAVS ISRENVPETG bmy_08323T0/1-433 LQKLSKADEP APVGSYDQKK EEEHNLLDKL THQLQELAMS ISRENVAETG BACU017737/1-664 LQKLSKADEP APVGSYDQKK EEEHNLLDKL THQLQELAVS ISRENVAETG 201 250 ENSP00000313169/1-733 APTEEEEESE SEDSEDSGGE EEDAEE---- -------EEE EKEENESHKW ENSTTRP00000002895/1-401 ALTEGEDDDS SAEEDEEEEE EEDEER---- ---------- ---------- ENSBTAP00000010098/1-686 ALAEREEEEN SDEEDEEEDD DEEESEESGG EDEETEEEEE EKQEGESQPE bmy_08323T0/1-433 ALTEGEDDDN SAEEDEEEEE EDEETT---- ---------- ---------- BACU017737/1-664 ALTEGEDDDS SAEEDEEDEE EEEEDE---- ---------- ---------E 251 300 ENSP00000313169/1-733 STGEEYIAVG DFTAQQVGDL TFKKGEILLV IEKKPDGWWI AKDAKGNEGL ENSTTRP00000002895/1-401 ---GEYVAIG DFTAQQVGDL TFKKGEILLI IEKNPDGWWM AKNAKGNKGL ENSBTAP00000010098/1-686 ATSGEYIALG DFTAQQVGDL TFKKGEILCI IKKNSDGWWM AKNAKGNEGL bmy_08323T0/1-433 --SGEYIAVG DFTAQQVGDL TFKKGEILLI IEKNPDGWWM AKNAKGNKGL BACU017737/1-664 ATSGEYIAVG DFTAQQVGDL TFKKGEILLI IEKNPDGWWM AKNAKGNKGL 301 350 ENSP00000313169/1-733 VPRTYLEPYS EEEEGQESSE EGSEEDVEAV DETADGAEVK QRTDPHWSAV ENSTTRP00000002895/1-401 IPRTYLELYN -KEEGPESSE EGSEEDVEVG DETAEGAEVK QRTDSHWSAV ENSBTAP00000010098/1-686 IPKTYLEPYN -KEGGQESSE GGSEEDTEVG DGTVDGAEVK QRTDSHWSAV bmy_08323T0/1-433 IPRTYLEPYN -KEEGEASSD EDSEEDVEIG DETAEGAEVK QRTDSHWSAV BACU017737/1-664 IPRTYLEPYN -KEESEESSE EGSEEDVEVG DETAEGAEVK QRTDSHWSAV 351 400 ENSP00000313169/1-733 QKAISEAGIF CLVNHVSFCY LIVLMRNRME TVEDTNGSET GFRAWNVQSR ENSTTRP00000002895/1-401 RKAISEVGIS CLINDVSFCY LIALIRVQIQ ---------- ---------- ENSBTAP00000010098/1-686 RKAISE---- ---------- ---------- ---------- ---------- bmy_08323T0/1-433 RKAISE---- ---------- ---------- ---------- ---------- BACU017737/1-664 RKAISE---- ---------- ---------- ---------- ---------- 401 450 ENSP00000313169/1-733 GRIFLVSKPV LQQINTVDVL TTMGAIPAGF R--------- ---------- ENSTTRP00000002895/1-401 ---------- -NRMETLN-- ESIGSA--GY RAWNAQSIKI FLVYKPMPXX ENSBTAP00000010098/1-686 ---------- ---INTVDVL TAMGAIPAGF R--------- ---------- bmy_08323T0/1-433 ---------- --QINTVDVL TTMGAIPAGF R--------- ---------- BACU017737/1-664 ---------- --QINTVDVL TTMGAIPAGF R--------- ---------- 451 500 ENSP00000313169/1-733 ---------- -------PST LSQLLEEGNQ FRANYFLQPE LMPSQLAFRD ENSTTRP00000002895/1-401 XXXXXXXXXX XXXXXXXXXX XXXXXXXXNQ FRASYFLQPE LTTSQLAFKD ENSBTAP00000010098/1-686 ---------- -------PST LFQLLEEGNQ FRASYFLQPE LTPSQLAFRD bmy_08323T0/1-433 ---------- -------PST LFQLLEEGNQ FRASYFLQPA LTTSQLAFRD BACU017737/1-664 ---------- -------PST LFQLLEEGNQ FRASYFLQPA LTTSQLAFRD 501 550 ENSP00000313169/1-733 LMWDATEGTI RSRPSRISLI LTLWSCKMIP LPGMSIQVLS RHVRLCLFDG ENSTTRP00000002895/1-401 LMWDAKTGSI RSRPSRVSLI LTLWSCKMIP LPGVSIQVLS RHVRFCLFDG ENSBTAP00000010098/1-686 LMWDAKTGSI RSRPSRVSLI LTLWSCKMIP LPGVSIQVLS RHVRLCLFDG bmy_08323T0/1-433 LMWDAKTGSI RSRPSRVSLI LTLWSCKMIP LPGXSIQVLS RHVRFCLFDG BACU017737/1-664 LMWDAKMGSI RSRPSRVSLI LTLWSCKMIP LPGASIQVLS RHVRFCLFDG 551 600 ENSP00000313169/1-733 NKVLSNIHTV RATWQPKKPK TWTFSPQVTR ILPCLLDGDC FIRSNSASPD ENSTTRP00000002895/1-401 SK-------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 SEVLSNIHTV RATWQPKKPK TWTFSPQVTG ILPCLLDGDC FIRSNSSSPD bmy_08323T0/1-433 NK-------- ---------- ---------- ---------- ---------- BACU017737/1-664 NKVLSNIHTV RATWQPKKPK TWTFSPQVTG ILPCLLDGDC FIRSNSSSPD 601 650 ENSP00000313169/1-733 LGILFELGIS YIRNSTGERG ELSCGWVFLK LFDASGVPIP AKTYELFLNG ENSTTRP00000002895/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 LGILFELGIS YIRNSTGERG ELSCGWVFLK LFDATGIPIP AKTYKLFLNG bmy_08323T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU017737/1-664 LGILFELGIS YIRNSTGERG ELSCGWVFLK LFDASGIPIP AKTYELFLNG 651 700 ENSP00000313169/1-733 GTPYEKGIEV DPSISRRAHG SVFYQIMTMR RQPQLLVKLR SLNRRSRNVL ENSTTRP00000002895/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 GTPYEKGVEV DPSVSRRAHG SVFHQLMTMR RQPQLLVKLR SLNRRSRSTL bmy_08323T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU017737/1-664 GTPYEKGVEV DPSLSRRAHG SVFHQMMTVR RQPQLLVKLR SLNRRSRSML 701 750 ENSP00000313169/1-733 SLLPETLIGN MCSIHLLIFY RQILGDVLLK DRMSLQSTDL ISHPMLATFP ENSTTRP00000002895/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 SLLPETLIGS MCCVHLLIFY RQILGDVLLK DRMSLNSADL ISNPVLATFP bmy_08323T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU017737/1-664 SLLPETLIGS MCSVHLLIFY RQILGDVLLK DRMSMHSADL ISNPVLATFP 751 800 ENSP00000313169/1-733 MLLEQPDVMD ALRSSWAGKE STLKRSEKRD KEFLKSTFLL VYHDCVLPLL ENSTTRP00000002895/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 KLLEESDIMD ALRSSWAEKE STLKRSEKGD RELLKAVFLL VYHDCALPLL bmy_08323T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU017737/1-664 KLLEQPDIMD ALRSSWAEKE STLKRSDKRD QELLKAVFLL VYHDCALPLL 801 850 ENSP00000313169/1-733 HSTRLPPFRW AEEETETARW KVITDFLKQN QENQGALQAL LSPDGVHEPF ENSTTRP00000002895/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010098/1-686 HSALLPPSRW AEEETEAARW KGIADFLKQN QENEGALQVL LSPEGVHEPF bmy_08323T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU017737/1-664 HSALLPPFRW AEEETEAARW KVIADFLKQN RENEGALQAL LSPAGLHEPF 851 900 ENSP00000313169/1-733 DLSEQTYDFL GEMRKNAV ENSTTRP00000002895/1-401 ---------- -------- ENSBTAP00000010098/1-686 DISEQTYDFL GERRKNVT bmy_08323T0/1-433 ---------- -------- BACU017737/1-664 DISEQTYDFL GEIRKNAA