KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:10 2014 Check: 00 .. Name: ENSBTAP00000010105/1-529 Len: 529 Check: 3471 Weight: 1.00 Name: ENSP00000364404/1-520 Len: 529 Check: 4778 Weight: 1.00 Name: ENSTTRP00000011615/1-520 Len: 529 Check: 8291 Weight: 1.00 Name: bmy_09095T0/1-499 Len: 529 Check: 5731 Weight: 1.00 Name: BACU010122/1-399 Len: 529 Check: 1339 Weight: 1.00 // 1 50 ENSBTAP00000010105/1-529 MGPSQKPNVC GRLSRRALGF FSRDAGMVQR TNLGILRALV CQESTKFKNV ENSP00000364404/1-520 MGPTRKPNVC SRLSRRALGC FSRDAGVVQR TNLGILRALV CQESTKFKNV ENSTTRP00000011615/1-520 MGPSQKPNVC RRLSRRALGF FSRDAGVVQR TNLGILRALV CQESTKFKNV bmy_09095T0/1-499 MGPSQKPNVC RRLSRRALGF FSRDAGVVQR TNLGILRALV CQESTKFKNV BACU010122/1-399 MGPSQKPNVC RRLSRRALGF FSRDAGVVQR TNLGILRALV CQESTKFKNV 51 100 ENSBTAP00000010105/1-529 WTTHSKSPIA YERGRIYFNN YRCCISSVTM EKRSKYLLIR CCFREEFLYF ENSP00000364404/1-520 WTTHSRSPIA YERGRIYFDN YRRCVSSVAS EPRKLYEMPK CSKSEKIEDA ENSTTRP00000011615/1-520 WTTHSKSPIA YERGRIYFDN YRCCVSSVAS EPRKLYEMPK CSKSEKIEDA bmy_09095T0/1-499 WTTHSKSPIA YERGRIYFDN YRCCVSSVAS EPRKLYEMPK CSKSEKIEDA BACU010122/1-399 WTTHSKSPIA YERGRIYFDN YRCCVSSVAS EPRKLYEMPK CSKSEKIEDA 101 150 ENSBTAP00000010105/1-529 GLKPCPTGEM LPSPSDYKSS LIALTAHNWL LRISATTGKV LEKIYLASYC ENSP00000364404/1-520 LLWECPVGDI LPNSSDYKSS LIALTAHNWL LRISATTGKI LEKIYLAPYC ENSTTRP00000011615/1-520 LLWECPVGEM LPNTSDYKSS LIALTAHNWL LRISATTGKV LEKIYLASYC bmy_09095T0/1-499 LLWECPVGEM LPNTSDYKSS LIALTAHNWL LRISATTGKV LEKIYLASYC BACU010122/1-399 LLWECAV--- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000010105/1-529 KFRYLSWDTP QEVIAVKSAQ NKSSTLARQA GIQQPVLLYL AVFHVLPFSL ENSP00000364404/1-520 KFRYLSWDTP QEVIAVKSAQ NRGSAVARQA GIQQHVLLYL AVFRVLPFSL ENSTTRP00000011615/1-520 KFRYLSWDTP QEVIAVKSAQ SKGSALAQQX XXXXXXXXXX XXXXXXXXXX bmy_09095T0/1-499 KFRYLSWDTP QEVIAVKSAQ NKGSALAQQ- ---------- ---------- BACU010122/1-399 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000010105/1-529 IGILEINKKI FGNVTDATLS HGILIVMYSS GLVRLYSFQA ITKQFMQQKL ENSP00000364404/1-520 VGILEINKKI FGNVTDATLS HGILIVMYSS GLVRLYSFQT IAEQFMQQKL ENSTTRP00000011615/1-520 XXXXXXXXXI FGSVTDATLS HGILIVMYSS GLVRLYSFQA ITEQXXXXKL bmy_09095T0/1-499 ---------I FGSVTDATLS HGILIVMYSS GLVRLYSFQA ITEQFMQQKL BACU010122/1-399 ---------I FGSVTDATLS HGILIVMYSS GLVRLYSFQA ITEQFMQQKL 251 300 ENSBTAP00000010105/1-529 DLGCACRWGG TTGTVGEAPF GIPCNIKITD TPPLLFEVSS LENAFQIGGH ENSP00000364404/1-520 DLGCACRWGG TTGTVGEAPF GIPCNIKITD MPPLLFEVSS LENAFQIGGH ENSTTRP00000011615/1-520 DLGCACRWGG TTGTVGEAPF GIPCNIKITD TPPLLFEVSS LENAFQIGGH bmy_09095T0/1-499 DLGCACRWGG TTGTVGEAPF GIPCNIKITD TPPLLFEVSS LENAFQIGGH BACU010122/1-399 DLGCACRWGG TTGTVGEAPF GIPCNIKITD TPPLLFEVSS LENAFQIGGH 301 350 ENSBTAP00000010105/1-529 PWHYIITPNK KKQKGVFHIC ALKDNSLAKN GIQEMECCSL ESDWIYFHPD ENSP00000364404/1-520 PWHYIVTPNK KKQKGVFHIC ALKDNSLAKN GIQEMDCCSL ESDWIYFHPD ENSTTRP00000011615/1-520 PWHYIITPNK KKQKGVFHIC ALKDNSLAKN GVQEMECCSL ESDWIYFHPD bmy_09095T0/1-499 PWHYIITPNK KKQKGVFHIC ALKDNSLAKN GVQEMECCSL ESDWIYFHPD BACU010122/1-399 PWHYIITPNK KKQKGVFHIC ALKDNSLAKN GVQEMECCSL ESDWIYFHPD 351 400 ENSBTAP00000010105/1-529 ASGRIIHVGP NQVKVLKLSE VENNSAQHQI SEDFVILANR ERNKNENLPT ENSP00000364404/1-520 ASGRIIHVGP NQVKVLKLTE IENNSSQHQI SEDFVILANR ENHKNENVLT ENSTTRP00000011615/1-520 ASGRIIHVGP N-VKVLKLSE VENNSAQHQI SEDFVILANR EKNKNENLPT bmy_09095T0/1-499 ASGRIIHVGP NQVKVLKLSE VENNSAQHQI SEDFVILANR EKNKNENLPT BACU010122/1-399 TSGRIIHVGP NQVKVLKLSE VENNSAQHQI SEDFVILANR EKNK------ 401 450 ENSBTAP00000010105/1-529 VTASGRVVKR SFTILDDDPE QETFKIVDYE DELDLLSVVA VTQIDAEGKA ENSP00000364404/1-520 VTASGRVVKK SFNLLDDDPE QETFKIVDYE DELDLLSVVA VTQIDAEGKA ENSTTRP00000011615/1-520 VTASGRVVKK SFNLLDDDPE QEXXXXXXXX XELDLLSVVA VTQIDAEGKA bmy_09095T0/1-499 VTASGRVVKK SFNLLDDDPE QETFKIVDYE DELDLLSVVA VTQIDAEGKA BACU010122/1-399 ---------- ---------- --TFKIVDYE DELDLLSVVA VTQIDAEGKA 451 500 ENSBTAP00000010105/1-529 HLDFHCNEYG TLLKSIPLME SWDVTYSHEV YFDRDLVLHI EQKPSRVFSC ENSP00000364404/1-520 HLDFHCNEYG TLLKSIPLVE SWDVTYSHEV YFDRDLVLHI EQKPNRVFSC ENSTTRP00000011615/1-520 HLDFHCNEYG TLLKSIPLVE SWDVTYSHEV YFDRDLVLHI EQKPSRVFSC bmy_09095T0/1-499 HLDFHCNEYG TLLKSIPLVE SWDVTYSHEV YFDRDLVLHI EQKPSRVFSC BACU010122/1-399 HLDFHCNEYG TLLKSIPLVE SWDVTYSHEV YFDRDLVLHI EQKPSRVFSC 501 550 ENSBTAP00000010105/1-529 YVYQMVCDPG EEEETTDKRN KTDHNNFTF ENSP00000364404/1-520 YVYQMICDTG EEEETINRSC --------- ENSTTRP00000011615/1-520 YVYQMVCDPG EEEETTNRSC K-------- bmy_09095T0/1-499 YVYQMVCDPG EEEETTNRSC KKDCNSFKF BACU010122/1-399 YVYQMVCDPG EEEETTNRSC KKDCSSFKF