KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:40:11 2014 Check: 00 .. Name: BACU014779/1-776 Len: 1791 Check: 7024 Weight: 1.00 Name: ENSBTAP00000010106/1-1593 Len: 1791 Check: 5460 Weight: 1.00 Name: bmy_08692T0/1-1269 Len: 1791 Check: 9992 Weight: 1.00 Name: ENSTTRP00000009923/1-1647 Len: 1791 Check: 58 Weight: 1.00 // 1 50 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 ---------- ---------- ---------- ---------- ---------- bmy_08692T0/1-1269 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009923/1-1647 MGLQARRTTS RSPDAAGPRP AVLPLLLPLL LCLRACGAAA PGAAEAPTLY 51 100 BACU014779/1-776 ---------- MGDECGPGGI QTRAVW---- -------CAH VEGWTTLHTN ENSBTAP00000010106/1-1593 ----GPWGRC MGDGCGPGGI QTRAVW---- -------CAH VEGWTTLHTN bmy_08692T0/1-1269 ---------M EGSAEDASRQ LPRRVLVYTT RRACRVLPSH RAGSA---KT ENSTTRP00000009923/1-1647 LWKTGPWGRC MGDECGPGGI QTRAVW---- -------CAH VEGWTTLHTN 101 150 BACU014779/1-776 CKQAERPSNQ QNCFKVCDWH KELYDWRLGP WNHCQPVISK SLEKPLECVK ENSBTAP00000010106/1-1593 CKPAERPSNQ QNCFKVCDWH KELYDWRLGP WNQCQPVISK SLEKPLECVK bmy_08692T0/1-1269 ARLPDRPTD- ---------- ---------- -----PILI- ---------- ENSTTRP00000009923/1-1647 CKQAERPSNQ QNCFKVCDWH KELYDWRLGP WNHCQPVISK SLEKPLECVK 151 200 BACU014779/1-776 GEEGIQVREI MCIQKEKDIP AEDIICEYFE PKPLLEQACL IPCQQDCIVS ENSBTAP00000010106/1-1593 GEEGIQVREI TCIEKEKDVP AEDIICEYFE PKPLLEQACL IPCRQDCIVS bmy_08692T0/1-1269 ---------- ---------- ---MLSHYQK EKKL------ ---------- ENSTTRP00000009923/1-1647 GEEGIQVREI MCIQKEKDIP AEDIICEYFE PKPLLEQACL IPCQQDCIVS 201 250 BACU014779/1-776 EFSAWSECSK TCGSGLQHRT RHVVAPPQFG GSGCPNLTEF QVCQSGACEA ENSBTAP00000010106/1-1593 EFSAWSECSK TCGSGLQHRT RHVVAPPQFG GSGCPNLTEF QVCQSGPCEA bmy_08692T0/1-1269 ---GWV---- ---------- ---------- -IGC------ ---------- ENSTTRP00000009923/1-1647 EFSAWSECSK TCGSGLQHRT RHVVAPPQFG GSGCPNLTEF QVCQSSACEA 251 300 BACU014779/1-776 EESMYSLQVG PWSTCSIPHS RQVRQTRRRG KNKERGKDRG KGVKDPEARE ENSBTAP00000010106/1-1593 EERMYSLQVG PWSTCSMPHS RQVRQARRRG KSKERDKDRG KGVKDPEARE bmy_08692T0/1-1269 ---------- ---------- ---------- --------RG NG-------- ENSTTRP00000009923/1-1647 EESMYSLQVG PWSTCSIPHS RQVRQARRRG KNKERGKDRG KGVKDPEARE 301 350 BACU014779/1-776 LIKKKRNRNR QNRQENKYWD IQIGYQTREV MCTNKTGKAA DLSFCQQEKL ENSBTAP00000010106/1-1593 LIKKKRNRNR QNRQENKYWD IQIGYQTREV MCTNKTGKAA DLSFCQQEKL bmy_08692T0/1-1269 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009923/1-1647 LIKKKRNRNR QNRQENKYWD IQIGYQTREV MCTNKTGKAA DLXXXXXXXX 351 400 BACU014779/1-776 PLTFQACVIT KECQVSEWSE WSPCSKTCHD MASPKGTRVR TRLIRQFPIG ENSBTAP00000010106/1-1593 PMTFQACVMT KECQVSEWSE WSPCSKTCHD PASPKGTRMR ARLIRQFPIG bmy_08692T0/1-1269 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009923/1-1647 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 401 450 BACU014779/1-776 SEKECPELEE KEPCVSQGDG VAPCAMYGWR TTEWTECRVD PLLSQQDKRR ENSBTAP00000010106/1-1593 SEKKCPELEE EEPCVSQGDG VAPCATYSWR TTEWTECRVD PLLSQQDKRR bmy_08692T0/1-1269 ---------- -----AQQEA RGKCEMV--- ---W------ ---------- ENSTTRP00000009923/1-1647 XXXXXXXXXX XXXXXXXXXX XXXXXXYGWR TTEWTECRVD PLLSQQDKRR 451 500 BACU014779/1-776 GNQTALCGGG VQTREVYCVQ ANEDLLSHLN THKDKEASKP VDLKSCAGPT ENSBTAP00000010106/1-1593 GNQTALCGGG VQTREAYCVQ ANENLLS-LN THKDKEAPKP VDLKSCTGPV bmy_08692T0/1-1269 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009923/1-1647 GNQTALCGGG VQTREVYCVQ ANEDLLSHLN SHKDKEASKP VDLKSCAGPI 501 550 BACU014779/1-776 PNTTQLCHVP CPVECEVSPW TAWGPCTYEN CNDQQGKKGF KLRKRRITNE ENSBTAP00000010106/1-1593 PNTTQLCHIP CPIECEVSPW TAWGPCTYEN CNDQQGKKGF KLRKRRITNE bmy_08692T0/1-1269 ---------- ---------K RTW------- ---------- ---------- ENSTTRP00000009923/1-1647 HNTTQLCHIP CPIECEVSPW TAWGPCTYEN CNDQQGKKGF KLRKRHITNE 551 600 BACU014779/1-776 PTGGSGGAGN CPHLLEAIPC EEPSCYDWKA VRLGDCEPDN GRECGPGTQI ENSBTAP00000010106/1-1593 PTGGSGGTGN CPHLLEAIPC EEPSCYDWKA VRLGDCEPDN GKECGPGTQV bmy_08692T0/1-1269 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009923/1-1647 PTGGSGGAGS CPHLLEAIPC EEPSCYDWKA VRLGDCEPDN GRECGPGTQI 601 650 BACU014779/1-776 QEVVCINSDG EEVDRQLCRD AIFPIPVACD APCPKDCVLS MWSAWSSCSH ENSBTAP00000010106/1-1593 QEVVCINSDG EEVDRQLCRD AIFPIPVACD VPCPRDCVLS MWSAWSSCSH bmy_08692T0/1-1269 ---------G EEVDRQLCRD AIFPIPVACD APCTKDCVLS MWSAWSSCSH ENSTTRP00000009923/1-1647 QEVVCINSDG EEVDRQLCRD AIFPIPVACD APCPKDCVLS TWSAWSSCSH 651 700 BACU014779/1-776 TCSGKTTEGK QIRARSILAY AGEEG----- ---------- ---------- ENSBTAP00000010106/1-1593 TCSGKTTEGK QTRARSILAY AGEEG----- ---------- ---------- bmy_08692T0/1-1269 TCSGKTTEGK QIRARSILAY AGEEGSVSLF LNNFICKIIK WNQAVEHLCQ ENSTTRP00000009923/1-1647 TCSGKTTEGK QIRARSILAY AGEEG----- ---------- ---------- 701 750 BACU014779/1-776 ---------- --------GA QCPNSSALQE VRSCNEHPCT VYHWQTGPWG ENSBTAP00000010106/1-1593 ---------- --------GV QCPNTSALQE VRSCNEHPCT VYHWQTGPWG bmy_08692T0/1-1269 QWSAIKVIRA AVAGKVTSGA QCPNSSALQE VRSCNEHPCT VYHWQTGPWG ENSTTRP00000009923/1-1647 ---------- --------GA QCPNSSALQE VRSCNEHPCT VYHWQTGPWG 751 800 BACU014779/1-776 QCIEDTSVSS FNTTTTWNGE TSCSVGMQTR KVICVRVNVG QVGPKKCPEN ENSBTAP00000010106/1-1593 QCIEDTSVSS FNTTTAWNGE ASCSVGMQTR KVICVRVNVG QVGPKKCPES bmy_08692T0/1-1269 QCIEDTSVSS FNTTTTWNGE TSCSVGMQTR KVICVRVNVG QVGPKKCPES ENSTTRP00000009923/1-1647 QCIEDTSVSS FNTTTTWNGE ASCSVGMQTR KVICVRVNVG QVGPKKCPES 801 850 BACU014779/1-776 LRPETVKPCL LPCRKDCIMT PYSDWTSCPS SCK------- ---------- ENSBTAP00000010106/1-1593 LRPETVRPCL LPCRKDCIVT PYSDWTSCPS SCK------- ---------- bmy_08692T0/1-1269 LRPETVKPCL LPCRKDCIVT PYSDWTSCPS SCKEGVMALE CSTLIRSQSL ENSTTRP00000009923/1-1647 LRPETVKPCL LPCRKDCIVT PYSDWTSCPS SCK------- ---------- 851 900 BACU014779/1-776 ---------- -------EGD SGIRKQTRHR VIIQLPANGG KDCTDPLYEE ENSBTAP00000010106/1-1593 ---------- -------EGD SGIKKQTRHR VIIQPPANGG RDCADPLYEE bmy_08692T0/1-1269 SCGLCKVKQY CQFDIFIEGD SGIRKQTRHR VIIQLPANGG KDCTDPLYEE ENSTTRP00000009923/1-1647 ---------- -------EGD SGIRKQTRHR VIIQLPANGG KDCTDPXXXX 901 950 BACU014779/1-776 KACEAPQVCQ SYR------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 KACEAPQVCQ SYRWKTHKWR RCQLVPWSVQ QDSPGAQEGC GPGRQARAIT bmy_08692T0/1-1269 KACETPQVCQ SYRWKTHKWR RCQLVPWSVQ QDSPGAQEGC GPGRQARAIT ENSTTRP00000009923/1-1647 XXXXXXXXXX XXXWKTHKWR RCQLVPWSVQ QDSPGVQEGC GPGRQARAIT 951 1000 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 CRKQDGGQAG IHECLRYAGP VPALTQACQM PCQDDCQLTS WSRFSSCNGD bmy_08692T0/1-1269 CRKQDGGQTG IHECLRYAGP XPALTQACQI PCQDDCQFTS WSKFSSCNGD ENSTTRP00000009923/1-1647 CRKQDGGQAG IHECLRYAGP VPALTQACQI PCQDDCQFTS WSKFSSCSGD 1001 1050 BACU014779/1-776 CGRLTN---- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 CGAVRTRKRA IVGKSKKKEK CKNSHLYPLI ETQYCPCDKY NAQPVGNWSD bmy_08692T0/1-1269 CGAVRTRKRT IVGKSKKKEK CKNSHLYPLI ETQYCPCDKY NAQPVGNWSD ENSTTRP00000009923/1-1647 CGAVRTRKRT IVGKSKKKEK CKNSHLYPLI ETQYCPCDKY NAQPVGNWSD 1051 1100 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 CILPEGKAEV LLGMKVQGDI KECGQGYRYQ AMACYDQNGR LVETSRCNSH bmy_08692T0/1-1269 CILPEGKVEV LLGMKVQGDI KECGQGYRYQ AMACYDQNGR LVETSRCNSH ENSTTRP00000009923/1-1647 CILPEGKVEV LLGMKVQGDI KECGQGYRYQ AMACYDQNGR LVKTSRCNSH 1101 1150 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 ---------- ---------- ---------- ---------- ---------- bmy_08692T0/1-1269 DRLFITELAR FATYLRYQVA EEKERLKAAI GTTVDKVLAK CSHLRLQSCA ENSTTRP00000009923/1-1647 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU014779/1-776 ---------- ---------- ---------- -----GAGAS ---------- ENSBTAP00000010106/1-1593 -----GYIEE ACIIPCPSDC KLSEWSNWSR CSKSCGSGVK VRSKWLREKP bmy_08692T0/1-1269 YNTHLSYIEE ACIIPCPSDC KLSEWSNWSR CSKSCGSGXK VRSKWLREKP ENSTTRP00000009923/1-1647 -----GYIEE ACIIPCPSDC KLSEWSNWSR CSKSCGSGVK VRSIWLREKP 1201 1250 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 YNGGRPCPKL DHVNQAQVYE VVPCHSDCSQ YIWVTEPWSI CKVTFVNTRD bmy_08692T0/1-1269 YNGGRPCPKL DHVNQ--VYE VVPCHSDCSQ YIWVTEPWSI CKVTFVNMRD ENSTTRP00000009923/1-1647 YNGGRPCPKL DHVNQNRVYE VVPCHSDCSQ YVWVTEPWSI CKVTFVNMRD 1251 1300 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 NCGEGVQTRK VRCMQNTADG PSDHVEDYLC DPEEMPLGSR ECKLPCPEDC bmy_08692T0/1-1269 NCGEGVQTRK VRCMQNTADG PSDHVEDYLC DPEEMPLGSR ECKLPCPEDC ENSTTRP00000009923/1-1647 NCGEGVQTRK VRCMQNTADG LSDHVEDYLC DPEEMPLGSR ECKLPCPEDC 1301 1350 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 VVSEWGPWTR CSLPCNQSTF RQRAADPIRQ PAEEGRACPD TVEKEPCNLN bmy_08692T0/1-1269 VITEWGPWTR CTLPCNQSSF RQRSADPIRQ PADEGRACPD AVEKEPCNLN ENSTTRP00000009923/1-1647 VITEWGPWTR CTLPCSQNSF RQRSADPIRQ PADEGRACPD AVEKEPCNLN 1351 1400 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 KNCFHYDYNV TDWSTCQLSE KAVCGNGIKT RMLDCVRSDG KSVNLKYCEE bmy_08692T0/1-1269 KNCFHYDYNV TDWSTCQLSE KAVCGNGMKT RMLDCVRSDG KSVNLKYCEE ENSTTRP00000009923/1-1647 KNCFHYDYNV TDWSTCQLSE KAVCGNGMKT RMLDCVRSDG KSVNLKYCEE 1401 1450 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 LGLEKTWQMN MSCMVECPVN CQLSDWSPWS ECSQTCGLTG KMIRRRTVTQ bmy_08692T0/1-1269 LGLEKNWQMN TSCVVECPVN CQLSDWSSWS ECSQTCGLTG KMIRRRTVTQ ENSTTRP00000009923/1-1647 LGLEKNWQMN TSCMVECPVN CQLSDWSPWS ECSQTCGLTG KMIRRRTVTQ 1451 1500 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 PFQGDGRPCP ALMEQSKPCP VKPCYQWRYG PWSACQVQDA QCGEGTRTRN bmy_08692T0/1-1269 PFQGDGRPCP ALMEQSKPCP VKPCYRWQYS QWSACQVQDA QCGEGARTRN ENSTTRP00000009923/1-1647 PFQGDGRPCP ALMEQSKPCP VKPCYRWQYS QWSACQVQDA QCGEGTRTRN 1501 1550 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 ISCVVSDGSA DDFSKVVDEE FCTDIEPAID GNKKAVLEET CTQPCPGDCY bmy_08692T0/1-1269 ISCVVSDGSA DDFSKVVDEE FCTDIEPIID GNKKVVLEET CTQPCPGDCY ENSTTRP00000009923/1-1647 ISCVVSDGSA DDFSKVVDEE FCTDIEPIID GNKKVVLEET CTQPCPGDCY 1551 1600 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 LKDWSSWSLC QLTCVNGEDL GFGGIQVRSR AVIIQELENQ HLCPEQKLET bmy_08692T0/1-1269 LKEWSSWSLC QLTCVNGEDL GFGGIQVRSR AVIIQELENQ HLCPEQMLET ENSTTRP00000009923/1-1647 LKEWSSWSMC QLTCVNGEDL GFGGIQVRSR AVIIQELENQ HLCPEQMLET 1601 1650 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 KPCDDGQCYE YKWMASAWKG SSRTVWCQRS DGVNVTGGCL VVRQPDADRS bmy_08692T0/1-1269 KSCDDGQCYE YKWMASAWKG SSRTVWCQRS DGINVTGGCL VVRQPDADRS ENSTTRP00000009923/1-1647 KSCDDGQCYE YKWMASAWKG SSRTVWCQRS DGINVTGGCL VVRQ-DADRS 1651 1700 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 CNPPCSQPHS YCSETRTCSC EEGYTEVMSS NGTLEQCTLI PVMLIPTVED bmy_08692T0/1-1269 CNPPCSQPHS YCSETRICSC EEGYTEVMSS NGTLEQCTLI PVVVIPTVED ENSTTRP00000009923/1-1647 CNPPCSQPHS YCSETRMCSC EEGYTEVMSS NGTLEQCTLI PVVVIPTVED 1701 1750 BACU014779/1-776 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010106/1-1593 KRGDVKTSRA VHPTQPSSNP VGRGRTWFLQ PFGPDGRLKT WVYGVAAGAF bmy_08692T0/1-1269 KRGDVKTSRA VHPTQPSSNP AGRGRTWFLQ PFGPDGRLKT WVYGVAAGAF ENSTTRP00000009923/1-1647 KRGDVKTSRA VHPTQPSSNP AGRGRTWFLQ PFGPDGRLKT WVYGVAAGAF 1751 1800 BACU014779/1-776 ---------- ---------- ---------- ---------- - ENSBTAP00000010106/1-1593 VLLIFIVSMI YLACKKPKKP QRRQNNRLKP LTLAYDGDAD M bmy_08692T0/1-1269 VLLIFIVSMI YLACKKPKKP QRRQNNRLKP LTLAYDGDAD M ENSTTRP00000009923/1-1647 VLLIFIVSMI YLACKKPKKP QRRQNNRLKP LTLAYDGDAD M