KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:12 2014 Check: 00 .. Name: ENSP00000265081/1-1137 Len: 1138 Check: 3753 Weight: 1.00 Name: ENSBTAP00000010107/1-1120 Len: 1138 Check: 8777 Weight: 1.00 Name: ENSTTRP00000015586/1-1122 Len: 1138 Check: 5592 Weight: 1.00 Name: bmy_17810T0/1-566 Len: 1138 Check: 3648 Weight: 1.00 Name: BACU008202/1-1122 Len: 1138 Check: 2058 Weight: 1.00 // 1 50 ENSP00000265081/1-1137 MSRRKPASGG LAASSSAPAR QAVLSRFFQS TGSLKSTSSS TGAADQVDPG ENSBTAP00000010107/1-1120 MPRRKPASGG AAPANPASAR QAVLSRFFQS TGSLKSTASP AGAAEKADPD ENSTTRP00000015586/1-1122 MSRRKPVSGG AAPAGPGPAR QAVLSRFFQS TGSLKSTSSA TGTAEKADPD bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 MSRRKPASRG AAPAGPGPAR QAVLSRFFHS TGSLKSTSSA TGAAEKGDPD 51 100 ENSP00000265081/1-1137 AAAAAAAAAA AAPPAPPAPA FPPQLPPHIA TEIDRRKKRP LENDGPVKKK ENSBTAP00000010107/1-1120 SDSE------ ----APLAST LPPQLQPHVV TEIDRSKKKA LESDGPVKKK ENSTTRP00000015586/1-1122 STA------- ----APLAAT LPPQLPPHVV AEIDRSKKRP LESDGPVKKK bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 SDSA------ ----APLAST LPPQLPPHVV AEIDRSKKRP LESDGPVKKK 101 150 ENSP00000265081/1-1137 VKKVQQKEGG SDLGMSGNSE PKKCLRTRNV SKSLEKLKEF CCDSALPQSR ENSBTAP00000010107/1-1120 ARKVQEKEEE SDSLMSGNSE PKKHLRTRTV LKSLEKLKEF CCDSALPQNR ENSTTRP00000015586/1-1122 AKKVQEKEEG SDSVMSGNAE PKKHLRTRIV LKSLEKLKEF CCDSALPQNR bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 AKKVQEKEEG SDSVMSRNPE PKKHLRTRIV LKSLEKLKEF CCDSALPQNR 151 200 ENSP00000265081/1-1137 VQTESLQERF AVLPKCTDFD DISLLHAKNA VSSEDSKRQI NQKDTTLFDL ENSBTAP00000010107/1-1120 VQTEPLQKKF AVLPKCTDFE DIDLLRAKNA VSSEDSKSQT SQKDKT---F ENSTTRP00000015586/1-1122 VQTESLQKRF AVLPKCTDFD DIDLLRAKNA VSSEDSKSQT SQKDKT---L bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 VQTESLQKRF AVLPKCTDFD DINLLRAKNA VSSEDSKSQT SQKDKT---L 201 250 ENSP00000265081/1-1137 SQFGSSNTSH ENLQKTA-SK SANKRSKSIY TPLELQYIEM KQQHKDAVLC ENSBTAP00000010107/1-1120 SHLGPSQKSY ENLQKTSDSK PSNKRTKSIY TPLELQYLEM KQQQKDAILC ENSTTRP00000015586/1-1122 SHCGSSHSSC ENLQKTSDSK PSNKRTKSIY TPLELQYIEM KQQQKDAILC bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 SHFGSSHSNY ENLQKTSDSK PSNKRTKSIY TPLELQYLEM KQQQKDAILC 251 300 ENSP00000265081/1-1137 VECGYKYRFF GEDAEIAARE LNIYCHLDHN FMTASIPTHR LFVHVRRLVA ENSBTAP00000010107/1-1120 VECGYKYRFF GEDAEIAARE LNIYCHLDHN FMTASIPTHR LFVHVRRLVA ENSTTRP00000015586/1-1122 VECGYKYRFF GEDAEIAARE LNIYCHLDHN FMTASIPTHR LFVHVRRLVA bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 VECGYKYRFF GEDAEIAARE LNIYCHLDHN FMTASIPTHR LFVHVRRLVA 301 350 ENSP00000265081/1-1137 KGYKVGVVKQ TETAALKAIG DNRSSLFSRK LTALYTKSTL IGEDVNPLIK ENSBTAP00000010107/1-1120 KGYKVGVVKQ TETAALKAIG DNKSSLFSRK LTALYTKSTL IGEDVNPLVK ENSTTRP00000015586/1-1122 KGYKVGVVKQ TETAALKAIG DSKSSLFSRK LTALYTKSTL IGEDVNPLVK bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 KGYKVGVVKQ TETAALKAIG DNKSSVFSRK LTALYTKSTL IGEDVNPLVK 351 400 ENSP00000265081/1-1137 LDDAVNVDEI MTDTSTSYLL CISENKENVR DKKKGNIFIG IVGVQPATGE ENSBTAP00000010107/1-1120 LDDAVNVDEV MTDTSTSYLL CICENKENVK DKKRGSVSIG IVGVQPATGE ENSTTRP00000015586/1-1122 LDDAVNVDEI MTDTSTSYLL CICENKENVK DKKKGNVFIG LVGVQPTTGE bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 LDDAVNVDEI MTDTSTSYLL CICENKENVK DKKKGNVFIG LVGVQPATGE 401 450 ENSP00000265081/1-1137 VVFDSFQDSA SRSELETRMS SLQPVELLLP SALSEQTEAL IHRATSVSVQ ENSBTAP00000010107/1-1120 VVFDSFQDSA SRSELETRIL CLQPVELLLP SDLSEQTETL IHRVTAMSVR ENSTTRP00000015586/1-1122 VVFDSFQDSA SRSELETRIL CLQPVELLLP SDLSEQTEML IHRTTAVSMR bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 VVFDSFQDSA SRTELETRIL CLQPVELLLP SDLSEQTEML IHKATAVSVR 451 500 ENSP00000265081/1-1137 DDRIRVERMD NIYFEYSHAF QAVTEFYAKD TVDIKGSQII SGIVNLEKPV ENSBTAP00000010107/1-1120 DDRIRVERMK NVYFEYSHAF QEVTEFYAKD VVDIKGSQSF SDIINLEKPV ENSTTRP00000015586/1-1122 DDRIRVERMD NMYFEYSHAF QEVTEFYAKD IVDGKGSQSF SGIINLEKPV bmy_17810T0/1-566 --------MD XMCFEYSHAF QEVTEFYAKD VVDGKGSQSF SGIINLEKPV BACU008202/1-1122 DDRIRVERMD SMCFEYSHAF QEVTEFYAKD VVD--GSQSF SGIINLEKPV 501 550 ENSP00000265081/1-1137 ICSLAAIIKY LKEFNLEKML SKPENFKQLS SKMEFMTING TTLRNLEILQ ENSBTAP00000010107/1-1120 ICSLAAIIRY LKEFNLEKVL SKPKNFKQLS GEMEFMTING TTLRNLEILQ ENSTTRP00000015586/1-1122 ICSLAAIIRY LKEFNLEKVL SKPKNFKQLS GEMEFMTING TTLRNLEILQ bmy_17810T0/1-566 ICSLAAIIRY LKEFNLEKVL SKPKNFKQLS GEMEFMTING TTLRNLEILQ BACU008202/1-1122 ICSLAAIIRY LKEFNLEKVL SKPKNFKQLS GEMEFMTING TTLRNLEILQ 551 600 ENSP00000265081/1-1137 NQTDMKTKGS LLWVLDHTKT SFGRRKLKKW VTQPLLKLRE INARLDAVSE ENSBTAP00000010107/1-1120 NQTDMKTKGS LFWVLDHTKT SFGRRKLKKW VTQPLLKLRE INARLDAVSE ENSTTRP00000015586/1-1122 NQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE INARLDAVSE bmy_17810T0/1-566 NQ-------- ---------- ---------- -------VRE INARLDAVSE BACU008202/1-1122 NQTDMKTKGS LFWVLDHTKT SFGKRKLKKW VTQPLLKLRE INARLDAVSE 601 650 ENSP00000265081/1-1137 VLHSESSVFG QIENHLRKLP DIERGLCSIY HKKCSTQEFF LIVKTLYHLK ENSBTAP00000010107/1-1120 VLHSESSVFG QIENHLRKLP DIERGLCSIY HKKCSTQEFF LIVKTLYHLK ENSTTRP00000015586/1-1122 VLHSESSVFG QIENHLRKLP DIERGLCSIY HKKCSTQEFF LIVKTLYHLK bmy_17810T0/1-566 VLHSESSVFG QIENHLRKLP DIERGLCSIY HKKCSTQEFF LIVKTLYHLK BACU008202/1-1122 VLHSESSVFG QIENHLRKLP DIERGLCSIY HKKCSTQEFF LIVKTLYHLK 651 700 ENSP00000265081/1-1137 SEFQAIIPAV NSHIQSDLLR TVILEIPELL SPVEHYLKIL NEQAAKVGDK ENSBTAP00000010107/1-1120 SEFQALIPAV NSHVESELLQ TFILEIPGLL SPVEHYLKIL NEQAAKIGDK ENSTTRP00000015586/1-1122 SEFQALIPAV NSHVQSELLQ TFISEIPELL SPVEHYLKIL NEQAAKIGDK bmy_17810T0/1-566 SEFQALIPAV NFHVQSELLQ TFISEIPELL SPVEHYLKIL NEQAA----- BACU008202/1-1122 SEFQTLIPAV NSHVQSELLQ TFISEIPELL SPVEHYLKIL NEQAAKIGDK 701 750 ENSP00000265081/1-1137 TELFKDLSDF PLIKKRKDEI QGVIDEIRMH LQEIRKILKN PSAQYVTVSG ENSBTAP00000010107/1-1120 TELFKDLSDF PLIKKRKDEI QDVTKKIQTH LQEIRKILKN PSAQYVTVSG ENSTTRP00000015586/1-1122 TELFKDLSHF PLIKKRKDEI QEVTDKIQTH LQEIRKILKN PSAQYVTVSG bmy_17810T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU008202/1-1122 TELFKDLSHF PLIKKRKDEI QEVTDKIQTH LQEIRKILKN PSAQYVTVSG 751 800 ENSP00000265081/1-1137 QEFMIEIKNS AVSCIPTDWV KVGSTKAVSR FHSPFIVENY RHLNQLREQL ENSBTAP00000010107/1-1120 QEFMIEVKNS AVSCIPTDWV KIGSTKAVSR FHSPFIVENY RHLNQLREQL ENSTTRP00000015586/1-1122 QEFMIEVKNS AVSCIPTDWV KVGSTKAVSR FHSPFIVENY RHLNQLREQL bmy_17810T0/1-566 ---------- ---------- ---NTKAVSR FHSPFIVENY RHLNQLREQL BACU008202/1-1122 QEFMIEVKNS AVSCIPTDWV KVGSTKAVSR FHSPFIVENY RHLNQLREQL 801 850 ENSP00000265081/1-1137 VLDCSAEWLD FLEKFSEHYH SLCKAVHHLA TVDCIFSLAK VAKQGDYCRP ENSBTAP00000010107/1-1120 VLDCSAEWLA FLENFNEHYH TLCKAVHHLA TIDCILSLAK VAKQRDYCRP ENSTTRP00000015586/1-1122 VLDCSAEWLD FLENFSEHYH SLCKAVHHLA TVDCIFSLAK VAKQGDYCRP bmy_17810T0/1-566 VLDCSAEWLD FLENFSEHYH SLCKAVHHLA TVDCIFSLAK VAKQGDYCRP BACU008202/1-1122 VLDCSAEWLD FLENFSEHYH SLCKAVHHLA TVDCIFSLAK VAKQGDYCRP 851 900 ENSP00000265081/1-1137 TVQEERKIVI KNGRHPVIDV LLGEQDQYVP NNTDLSEDSE RVMIITGPNM ENSBTAP00000010107/1-1120 TLQEERKILI KNGRHPVIDV LLGEQDQFVP NSTDLSGDSE RVMIITGPNM ENSTTRP00000015586/1-1122 TLQEERKIII KNGRHPVIDV LLGEQGQYVP NSTNLLGDSE RVMIITGPNM bmy_17810T0/1-566 TLQEERKIII KNGRHPVIDV LLGEQDQYVP NSTNLLGDSE RVMIITGPNM BACU008202/1-1122 TLQEERKIII KNGRHPVIDV LLGEQDQYVP NSTNLLGDSE RVMIITGPNM 901 950 ENSP00000265081/1-1137 GGKSSYIKQV ALITIMAQIG SYVPAEEATI GIVDGIFTRM GAADNIYKGQ ENSBTAP00000010107/1-1120 GGKSSYIKQV ALITVMAQIG SYVPAEEATI GIVDGIFTRM GAADNIYKGQ ENSTTRP00000015586/1-1122 GGKSSYIKQV ALITIMAQIG SYVPAEEATV GIVDGIFTRM GAADNICKGQ bmy_17810T0/1-566 GGKSSYIKQV ALITIMAQIG SYVPAEEATI GIVDGIFTRM GAADNIYKGQ BACU008202/1-1122 GGKSSYIKQV ALITIMAQIG SYVPAEEATI GIVDGIFTRM GAADNIYKGQ 951 1000 ENSP00000265081/1-1137 STFMEELTDT AEIIRKATSQ SLVILDELGR GTSTHDGIAI AYATLEYFIR ENSBTAP00000010107/1-1120 STFMEELTDT AEIIRKATPQ SLVILDELGR GTSTHDGIAI AYATLEHFIR ENSTTRP00000015586/1-1122 STFMEELADT AEIIRKATSQ SLVILDELGR GTSTHDGIAI AYATLEHFIR bmy_17810T0/1-566 STFMEELADT AEIIRKATSQ SLVILDELGR GTSTHDGIAI AYATLEHFIR BACU008202/1-1122 STFMEELADT AEIIRKATSQ SLVILDELGR GTSTHDGIAI AYATLEHFIR 1001 1050 ENSP00000265081/1-1137 DVKSLTLFVT HYPPVCELEK NYSHQVGNYH MGFLVSEDES KLDPGAAEQV ENSBTAP00000010107/1-1120 DVKSLTLFVT HYPPVCELEK SYSQQVGNYH MGFLVNEDES KQDAGEEDQV ENSTTRP00000015586/1-1122 DVKSLTLFVT HYPPVCELEK SYSQQVGNYH MGFLVNEDES KQDPGEEDQV bmy_17810T0/1-566 DVKSLTLFVT HYPPVCELEK SYSQQVGNYH MGFLVNEDES KQDPGEEDQV BACU008202/1-1122 DVKSLTLFVT HYPPVCELEK SYSQQVGNYH MGFLVNEDES KQDPGEEDQV 1051 1100 ENSP00000265081/1-1137 PDFVTFLYQI TRGIAARSYG LNVAKLADVP GEILKKAAHK SKELEGLINT ENSBTAP00000010107/1-1120 PDSVIFLYQI TRGIAARSYG LNVAKLADVP GEILKKAASK SKELEGLVNM ENSTTRP00000015586/1-1122 PDFVTFLYQI TRGVAARSYG LNVAKLADVP GEILKKAASK SKELEGLVNM bmy_17810T0/1-566 PDFVTFLYQI TRGVAARSYG LNVAKLADVP GEILKKAASK SKELEGLVNM BACU008202/1-1122 PDFVTFLYQI TRGVAARSYG LNVAKLADVP GEILKKAASK SKELEGLVNM 1101 1150 ENSP00000265081/1-1137 KRKRLKYFAK LWTMHNAQDL QKWTEEFNME ETQTSLLH ENSBTAP00000010107/1-1120 KRKKLKCFTK LWTVNDAKDL QKWTE----E EI-TDVSL ENSTTRP00000015586/1-1122 KRKR-KCFAK LWTINDAN-L QKWMDEFKLE EIQTALLE bmy_17810T0/1-566 KRKRLKCFAK LWTINDANDL QKWMDEFKLE EI-TDFSS BACU008202/1-1122 KRKRLKCFAK LWTINDANDL QKWMDEFKLE EI-TDFSS