KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:40:14 2014  Check: 00 ..

 Name: ENSBTAP00000010129/1-260  Len:    285  Check:  3255  Weight:  1.00
 Name: ENSP00000424123/1-281     Len:    285  Check:  1513  Weight:  1.00
 Name: ENSTTRP00000000009/1-283  Len:    285  Check:  680  Weight:  1.00
 Name: bmy_11405T0/1-252         Len:    285  Check:  4004  Weight:  1.00
 Name: BACU018317/1-262          Len:    285  Check:  8829  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000010129/1-260  ---------- ---------- -DPRVEDWLL MSSPLPQTII LGFYVYFVTS 
ENSP00000424123/1-281     MAFSDLTSRT VHLYDNWIKD ADPRVEDWLL MSSPLPQTIL LGFYVYFVTS 
ENSTTRP00000000009/1-283  MAFSDLTSRT VRLYGNWIKD ADPRVEDWLL MSSPLPQTVI LGLYVYFVTS 
bmy_11405T0/1-252         MAFSDLTSRT VRLYGNWIKD ADPRVEDWLL MSSPLPQTII LGLYVYFVTS 
BACU018317/1-262          ---------- ---------- -DPRVEDWLL MSSPLPQTII LGLYVYFVTS 


                          51                                                 100
ENSBTAP00000010129/1-260  LGPKLMENRK PFELKKVMIT YNFSIVLFSV YMFYE--FIM SGWGTGYSFR 
ENSP00000424123/1-281     LGPKLMENRK PFELKKAMIT YNFFIVLFSV YMCYE--FVM SGWGIGYSFR 
ENSTTRP00000000009/1-283  LGPKLMENRK PFELKKAMIT YNFFIVLFSV YMCYE--FVM SGWGTGYSFR 
bmy_11405T0/1-252         LGPKLMENRK PFELKKAMIT YNFFI----- -------FVM SGWGTGYSFR 
BACU018317/1-262          LGPKLMENRK PFELKKAMIT YNFFIVLFSV YMCYEASFVM SGWGTGYSFR 


                          101                                                150
ENSBTAP00000010129/1-260  CDIVDYSQSP TALRMVRTCW LYYFSKFIEL LDTIFFILRK KNSQVTFLHV 
ENSP00000424123/1-281     CDIVDYSRSP TALRMARTCW LYYFSKFIEL LDTIFFVLRK KNSQVTFLHV 
ENSTTRP00000000009/1-283  CEIVDYSRSP TALRMARTCW LYYFSKFIEL LDTIFFVLRK KNSQVTFLHV 
bmy_11405T0/1-252         CEIVDYSRSP TALR------ ---------- ---IFFVLRK KSSQVTFLHV 
BACU018317/1-262          CEIVDYSHSP TALRMARTCW LYYFSKFIEL LDTIFFVLRK KSSQVTFLHV 


                          151                                                200
ENSBTAP00000010129/1-260  FHHTIMPWTW WFGVKFAAGG LGTFHAFLNT AVHVVMYSYY GLCALGPDYQ 
ENSP00000424123/1-281     FHHTIMPWTW WFGVKFAAGG LGTFHALLNT AVHVVMYSYY GLSALGPAYQ 
ENSTTRP00000000009/1-283  FHHTIMPWTW WFGVKFAAGG LGTFHAFLNT AVHVVMYSYY GLCALGPAYQ 
bmy_11405T0/1-252         FHHTIMPWTW WFGVKFAAGG LGTFHAFLNT AVHVVMYSYY GLCALGPAYQ 
BACU018317/1-262          FHHTIMPWTW WFGVKFAAGG LGTFHAFLNT AVHVVMYSYY GLCALGPAYQ 


                          201                                                250
ENSBTAP00000010129/1-260  KYLWWKKYLT SLQLIQFVLI TIHISQFFFM EDCKYQFPVF QYIIMSYGCI 
ENSP00000424123/1-281     KYLWWKKYLT SLQLVQFVIV AIHISQFFFM EDCKYQFPVF ACIIMSYSFM 
ENSTTRP00000000009/1-283  KYLWWKKYLT SLQLVQFVIV TIHIGQFFFM EDCKYQFPVF LYIIMSYGCI 
bmy_11405T0/1-252         KYLWWKKYLT SLQLVQFVIV TIHIGQFFFM EDCKYQFPVF LYIIMSYGCI 
BACU018317/1-262          KYLWWKKYLT SLQLVQFVIV TIHIGQFFFM EDCKYQFPVF LYIIMSYGCI 


                          251                                                300
ENSBTAP00000010129/1-260  FLLLFLHFWY RAYTKGQRLP KTVKHGICKN KDH-- 
ENSP00000424123/1-281     FLLLFLHFWY RAYTKGQRLP KTVKNGTCKN KDN-- 
ENSTTRP00000000009/1-283  FLLLFLHFWY RAYTKGQRLP KTVKNGICKN KDHNS 
bmy_11405T0/1-252         FLLLFLHFWY RAYTKGQRLP KTVKNGVCKN KDH-- 
BACU018317/1-262          FLLLFLHFWY RAYTKGQRLP KTVKNGVCKN KDH--