KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:17 2014 Check: 00 .. Name: ENSBTAP00000010163/1-584 Len: 1037 Check: 8242 Weight: 1.00 Name: ENSP00000346725/1-588 Len: 1037 Check: 6342 Weight: 1.00 Name: ENSTTRP00000001455/1-560 Len: 1037 Check: 9281 Weight: 1.00 Name: bmy_01599T0/1-499 Len: 1037 Check: 6618 Weight: 1.00 Name: BACU003326/1-1018 Len: 1037 Check: 1149 Weight: 1.00 // 1 50 ENSBTAP00000010163/1-584 MGGLEKKKYE RGSATNYITR NKARKKLQLS LADFRRLCIL KGIYPHEPKH ENSP00000346725/1-588 MGGLEKKKYE RGSATNYITR NKARKKLQLS LADFRRLCIL KGIYPHEPKH ENSTTRP00000001455/1-560 MGGLEKKKXX XXXXXXXXXQ NKARKKLQLS LADFRRLCIL KGIYPHEPKH bmy_01599T0/1-499 MGGLEKKKYE RGSATNYITR NKARKKLQLS LADF------ ---------- BACU003326/1-1018 -------KYE RGSATNYITR NKARKKLQLS LADFRRLCIL KGIYPHEPKH 51 100 ENSBTAP00000010163/1-584 KKKVNKGSTA ARTFYLIKDI KFLLHEPIVN KFREYKVFVR KLRKAYGKSE ENSP00000346725/1-588 KKKVNKGSTA ARTFYLIKDI RFLLHEPIVN KFREYKVFVR KLRKAYGKSE ENSTTRP00000001455/1-560 KKKVNKGSTA ARTFYLIKDI RFLLHEPIVN KFREYKVFVR KLRKAYGKSE bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 KKKVNKGSTA ARTFYLIKDI RFLLHEPIVN KFREYKVFVR KLRKAYGKSE 101 150 ENSBTAP00000010163/1-584 WNTVERLKDN KPNYKLDHIV KERFTNFVDT LREKDQTTCP RSMLAGLHRT ENSP00000346725/1-588 WNTVERLKDN KPNYKLDHII KERYPTFIDA LRDLDDALSM CFLFSTFPRT ENSTTRP00000001455/1-560 WNTVERLKDN KPNYKLDHIV KERYPTFIDA LRDLDDALSM CFLFSTFPRT bmy_01599T0/1-499 ---------- ---------- --RYPTFIDA LRDLDDALSM CFLFSTFPRT BACU003326/1-1018 WNTVERLKDN KPNYKLDHIV KERYPTFIDA LRDLDDALSM CFLFSTFPRT 151 200 ENSBTAP00000010163/1-584 GKGPLQATPP RRRRRPGASR ----RPAPPQ VFLSIKGIYY QAEVLGQPIV ENSP00000346725/1-588 GKCHVQTIQL CRRLTVEFMH YIIAARALRK VFLSIKGIYY QAEVLGQPIV ENSTTRP00000001455/1-560 GKCHVHTIQL CHRLAVEFMH YIIAARALRK VFLSIKGIYY QAEVLGQPIV bmy_01599T0/1-499 GKCHVHTIQL CHRLAVEFMH YVITARALRK VFLSIKGIYY QAEVLGQPIV BACU003326/1-1018 GKCHVHTIQL CHRLAVEFMH YVIAARALRK VFLSIKGIYY QAEVLGQPIV 201 250 ENSBTAP00000010163/1-584 WITPYTFSHD HPTDVDYRVM ATFTEFYTTL LGFVNFRLYQ SLNLHYPPKL ENSP00000346725/1-588 WITPYAFSHD HPTDVDYRVM ATFTEFYTTL LGFVNFRLYQ LLNLHYPPKL ENSTTRP00000001455/1-560 WITPYTFSHD HPTDVDYRVM ATFTEFYTTL LGFVNFRLYQ SLNLHYPPKL bmy_01599T0/1-499 WITPYTFSHD HPTDVDYRVM ATFTEFYTTL LGFVNFRLYQ SLNLHYPPKL BACU003326/1-1018 WITPYTFSHD HPTDVDYRVM ATFTEFYTTL LGFVNFRLYQ SLNLHYPPKL 251 300 ENSBTAP00000010163/1-584 ESQVHTEAKT SEDAYALNSE SSLEKLAALS ASLARVVVPT EEEEAEADEF ENSP00000346725/1-588 EGQAQAEAKA GEGTYALDSE SCMEKLAALS ASLARVVVPA TEEEAEVDEF ENSTTRP00000001455/1-560 EGQAHAEAKA SEDTYALDSE SSMEKLASLS ASLARVVVPA EEEEAEVDEF bmy_01599T0/1-499 EGQAHAEAKA SEDTYALDSE SSMEKLASLS ASLARVVVPA EEEEAEVDEF BACU003326/1-1018 EGQAHAEAKA SEDTYALDSE SSMEKLASLS ASLARVVVPA EEEEAE---- 301 350 ENSBTAP00000010163/1-584 PADGEMAAQE EDRRKELEAQ EKHKKLFEGL RFFLNREVPR EALAFVIRSF ENSP00000346725/1-588 PTDGEMSAQE EDRRKELEAQ EKHKKLFEGL KFFLNREVPR EALAFIIRSF ENSTTRP00000001455/1-560 PADGEMVAQ- EDCRKELEAQ EKHKKLFEGL KFFLNREVPR EALAFVIRSF bmy_01599T0/1-499 PADGEMVVQ- EDCRKELEAQ EKHKKLFEGL KFFLNREVPR EALAFVIRSF BACU003326/1-1018 ----EMVVQ- EDCRKELEAQ EKHKKLFEGL KFFLNREVPR EALAFVIRSF 351 400 ENSBTAP00000010163/1-584 GGIVSWDKSL CIGATYDVTD PSITHQIVDR PGQQTPVIGR YYVQPQWVFD ENSP00000346725/1-588 GGEVSWDKSL CIGATYDVTD SRITHQIVDR PGQQTSVIGR CYVQPQWVFD ENSTTRP00000001455/1-560 GGNVSWDKSL CIGATYDVTD SGITHQIVDR PGQQTPVIGR YYVQPQWVFD bmy_01599T0/1-499 GGNVSWDKSL CIGATYDVTD SGITHQIVDR PGQQTPVIGR YYVQPQWVFD BACU003326/1-1018 GGNVSWDKSL CIGATYDVTD SGITHQIVDR PGQQTPVIGR YYVQPQWVFD 401 450 ENSBTAP00000010163/1-584 SVNAQLLLPV ADYFPGVQLP PHLSPFVTEK EGDYVPPEKL KLLALQRGEH ENSP00000346725/1-588 SVNARLLLPV AEYFSGVQLP PHLSPFVTEK EGDYVPPEKL KLLALQRGED ENSTTRP00000001455/1-560 SVNARLLLPV ADYFPGVQLP PHLSPFVSEK EGDYVPPEKQ KLLALQRGEH bmy_01599T0/1-499 SVNARLLLPV ADYFPGVQLP PHLSPFVSEK EGDYMPPEKL KLLALQRGEH BACU003326/1-1018 SVNARLLLPV ADYFPGVQLP PHLSPFVSEK EGDYMPPEKL KLLALQRGEH 451 500 ENSBTAP00000010163/1-584 AGNLNESEEE DEEED--DGD GEEE-GEKEE EEEDMEADSE KEEEARLTAL ENSP00000346725/1-588 PGNLNESEEE EEEDDNNEGD GDEE-GENEE EEEDAEAGSE KEEEARLAAL ENSTTRP00000001455/1-560 PGNLNESEEE DEEED-DKGD GDEEGGKEEE EEEDKEAGSE REEEARLTAP bmy_01599T0/1-499 PGNLNESEEE DEEED-DEGD GDEEGGREEE EEEDKEAGSE REEEARLTAP BACU003326/1-1018 PGNLNESEEE DEEED-DEGD GDEEGGKEEE EEEDKETGSE REEEARLTAP 501 550 ENSBTAP00000010163/1-584 EERRLEGKTE KPRVMAGTVK LEDKQRLAQE EESEAKRLAI MMMKKREKYL ENSP00000346725/1-588 EEQRMEGK-- KPRVMAGTLK LEDKQRLAQE EESEAKRLAI MMMKKREKYL ENSTTRP00000001455/1-560 EEPRLEGK-- KPKVMVGTVK LEDKQRLAQE EDSEAKRLAI MMMKKREKYL bmy_01599T0/1-499 EEPRMERK-- KPRVMAGTVK LEDKQRLAQE EESEAKRLAI MMMKKREKYL BACU003326/1-1018 EEPRMERK-- KPRVMAGTVK LEDKQRLAQE EESEAKRLAI MMMKKREKYL 551 600 ENSBTAP00000010163/1-584 YNKIMFGKKR KIREANKLAE KRKAHDEAVR SEKKAKKVRA L--------- ENSP00000346725/1-588 YQKIMFGKRR KIREANKLAE KRKAHDEAVR SEKKAKKARP E--------- ENSTTRP00000001455/1-560 YNKIMFGKRR KIRE------ ---------- ---------- ---------- bmy_01599T0/1-499 YNKIMFGKRR KIREANKLVE KRKAHDEAVR SEKKAKKARP E--------- BACU003326/1-1018 YNKIMFGKRR KIREANKLLE KRKAHDEAAR SEKKAKKARP DTESPSSVHR 601 650 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 ASCTPVLGTV QVSEMPLPQK KRWESMAKGL VLGALFTSFL LLLYSYAVPP 651 700 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 LHTGLASTTP EGAAPCSPAL SEPEAPTPAN GSAGGCQPRR DIVFMKTHKT 701 750 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 ASSTLLNILF RFGQKHGLKF AFPNGRNDFD YPAFFARSLV QDYRPGACFN 751 800 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 IICNHMRFHY DEVRGLVPPN ATFITVLRDP ARLFESSFHY FGSVVPFTWK 801 850 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 LSGRDKLAEF LQDPDRYYDP HGYNAHYLRN LLFFDLGYDS DLDPRSPQVQ 851 900 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 EHILEVERRF HLVLLQEYFD ESLVLLKDLL CWELEDVLYF KLNARRASAV 901 950 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 PRLSGELYRR ATAWNVLDAR LYRHFNASFW RKVEAFGRER MAREVAALRR 951 1000 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000346725/1-588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ---------- ---------- bmy_01599T0/1-499 ---------- ---------- ---------- ---------- ---------- BACU003326/1-1018 ANERMRRICI DGGHAVDATA IQDSAMQPWQ PLGTKSILGY NLKKSIGRRH 1001 1050 ENSBTAP00000010163/1-584 ---------- ---------- ---------- ------- ENSP00000346725/1-588 ---------- ---------- ---------- ------- ENSTTRP00000001455/1-560 ---------- ---------- ---------- ------- bmy_01599T0/1-499 ---------- ---------- ---------- ------- BACU003326/1-1018 AQLCRRMLTP EIQYLMDLGV NLWVTKLWKL IRDFLQW