KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:20 2014 Check: 00 .. Name: ENSP00000242057/1-848 Len: 901 Check: 8926 Weight: 1.00 Name: ENSBTAP00000010187/1-844 Len: 901 Check: 4210 Weight: 1.00 Name: ENSTTRP00000006540/1-839 Len: 901 Check: 1587 Weight: 1.00 Name: bmy_01839T0/1-850 Len: 901 Check: 4389 Weight: 1.00 Name: BACU000468/1-824 Len: 901 Check: 2622 Weight: 1.00 // 1 50 ENSP00000242057/1-848 MNSSSANITY ASRKRRKPVQ KTVKPIPAEG IKSNPSKRHR DRLNTELDRL ENSBTAP00000010187/1-844 MNSSSANITY ASRKRRKPVQ KTVKPVPAEG IKSNPSKRHR DRLNTELDRL ENSTTRP00000006540/1-839 MNSSSANITY ASRKRRKPVQ KTVKPVPAEG IKSNPSKRHR DRLNTELDRL bmy_01839T0/1-850 MNSSGANITY ASRKRRKPVQ KTVKPVPAEG IKSNPSKRHR DRLNTELDRL BACU000468/1-824 MNSSSANITY ASRKRRKPVQ KTVKPVPAEG IKSNPSKRHR DRLNTELDRL 51 100 ENSP00000242057/1-848 ASLLPFPQDV INKLDKLSVL RLSVSYLRAK SFFDVALKSS PTERNGGQDN ENSBTAP00000010187/1-844 ASLLPFPPDV INKLDKLSVL RLSVSYLRAK SFFDVALKSS PADRNGVQDN ENSTTRP00000006540/1-839 ASLLPFPQDV VNKLDKLSVL RLSVSYLRAK SFFDVALKST PADRNGVQDN bmy_01839T0/1-850 ASLLPFPQDV INKLDKLSVL RLSVSYLRAK SFFDVALQST PADRNGVQDN BACU000468/1-824 ASLLPFPQDV INKLDKLSVL RLSVSYLRAK SFFDVALQST PADRNGVQDN 101 150 ENSP00000242057/1-848 CRAANFREGL NLQEGEFLLQ ALNGFVLVVT TDALVFYASS TIQDYLGFQQ ENSBTAP00000010187/1-844 CR-TKFREGL NLQEGEFLLQ ALNGFVLVVT TDALVFYASS TIQDYLGFQQ ENSTTRP00000006540/1-839 CR-TKFREGL NLQEGEFLLQ ALXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01839T0/1-850 CR-TKFREGL NLQEGEFLLQ ALNGFVLVVT TDALVFYASS TIQDYLGFQQ BACU000468/1-824 CR-TKCREGL NLQEGEFLLQ ALNGFVLVVT TDALVFYASS TIQDYLGFQQ 151 200 ENSP00000242057/1-848 SDVIHQSVYE LIHTEDRAEF QRQLHWALNP SQCTESGQGI EEATGLPQTV ENSBTAP00000010187/1-844 SDVIHQSVYE LIHTEDRAEF QRQLHWALNP QQCPDSGQRI DEANGLSQPA ENSTTRP00000006540/1-839 SDVIHQSVYE LIHTEDRAEF QRQLHWALNP SQCPDSGQKM DEANGLSQPA bmy_01839T0/1-850 SDVIHQSVYE LIHTEDRAEF QRQLHWALNP SQCPDSGQKI NEANGLSQPA BACU000468/1-824 SDVIHQSVYE LIHTEDRAEF QRQLHWALNP SQCPDSGQKI DEANGLSQPA 201 250 ENSP00000242057/1-848 VCYNPDQIPP ENSPLMERCF ICRLRCLLDN SSGFLAMNFQ GKLKYLHGQK ENSBTAP00000010187/1-844 VYYNPDQIPP ENSSFMERCF VCRLRCLLDN SSGFLAMNFQ GRLKYLHGQN ENSTTRP00000006540/1-839 VYYNPDQVPP ENSSSMERCF VCRLRCLLDN SSGFLAMNFQ GRLKYLHGQN bmy_01839T0/1-850 VYYNPDQLPP ENSSSMERCF VCRLRCLLDN SSGFLAMNFQ GRLKYLHGQN BACU000468/1-824 VYYNPDQVPP ENSSSMERCF VCRLRCLLDN SSGFLAMNFQ GRLKYLHGQN 251 300 ENSP00000242057/1-848 KKGKDGSILP PQLALFAIAT PLQPPSILEI RTKNFIFRTK HKLDFTPIGC ENSBTAP00000010187/1-844 KKGKDGSILP PQLALFAIAT PLQPPSILEI RTKNFIFRTK HKLDFTPTGC ENSTTRP00000006540/1-839 KKGKDGSILP PQLALFAIAT PLQPPSILEI RTKNFIFRTK HKLDFTPTGC bmy_01839T0/1-850 KKGKDGSILP PQLALFAIAT PLQPPSILEI RTKNFIFRTK HKLDFTPTGC BACU000468/1-824 RKGKDGSILP PQLALFAIAT PLQPPSILEI RTKNFIFRTK HKLDFTPTGC 301 350 ENSP00000242057/1-848 DAKGRIVLGY TEAELCTRGS GYQFIHAADM LYCAESHIRM IKTGESGMIV ENSBTAP00000010187/1-844 DAKGKLVLGY TEAELSMRGS GYQFVHAADM LYCAEYHIRM IKTGESGMIV ENSTTRP00000006540/1-839 DAKGRIVLGY TEAELCMRGS GYQFIHAADM LYCAEYHIRM IKTGESGMIV bmy_01839T0/1-850 DAKGRIVLGY TEAELCMRGS GYQFIHAADM LYCAEYHIRM IKTGESGMIV BACU000468/1-824 DAKGRIVLGY TEAELCMRGS GYQFIHAADM LYCAEYHIRM IKTGESGMIV 351 400 ENSP00000242057/1-848 FRLLTKNNRW TWVQSNARLL YKNGRPDYII VTQRPLTDEE GTEHLRKRNT ENSBTAP00000010187/1-844 FRLLTKDNRW AWVQSNARLV YKNGRPDYII ATQRPLTDEE GMEHLNKRNM ENSTTRP00000006540/1-839 FRLLTKDNRW TWVQSNARLV YKNGRPDYII ATQRPLTDEE GTEHLRKRNL bmy_01839T0/1-850 FRLLTKDNRW TWVQSNARLV YKNGRPDYII ATQRPLTDEE GTEHLRKRNM BACU000468/1-824 FRLLTKDNRW TWVQSNARLV YKNGRPDYII ATQRPLTDEE GTEHLRKRNM 401 450 ENSP00000242057/1-848 KLPFMFTTGE AVLYEATNPF PAIMDPLPLR TKNGTSGKDS ATTSTLSKDS ENSBTAP00000010187/1-844 KLPFMFTTGD AILYEISNPF PSVMDPLPIK TKNGAGGKES TTTSALSKDS ENSTTRP00000006540/1-839 KLPFMFTTGE AVLYEVTNPF PPIMDPLPIR TKNGAGGKDS ATKSALSKDS bmy_01839T0/1-850 KLPFMFTTGE AVLYEVTNPF PPIMDPLPIR TKTGAGGKGS ATKSTLNKDS BACU000468/1-824 KLPFMFTTGE AVLYEVTNPF PPIMDPLPIR TKTGAGGKGS ATKSTLNKDS 451 500 ENSP00000242057/1-848 LNPSSLLAAM MQQDESIYLY PASSTSSTAP FENNFFNESM NECRNWQDNT ENSBTAP00000010187/1-844 LNPSSLLNAM MQQDEAIYLY PASTST---P FERNFFSDSL NECSNWQNNV ENSTTRP00000006540/1-839 LNPSSLLNAM MQQDESIYRY PASSST---P FERNFFNDSQ NECSNWQNNV bmy_01839T0/1-850 LNPSSLLNAM MQQDESIYLY PASSST---P FERNFFTDSQ NECSSWQSNV BACU000468/1-824 LNPSSLLNAM MQQDESIYLY PASSST---P FERNFFSDSQ NECSSWQSSV 501 550 ENSP00000242057/1-848 APMGNDTILK HEQIDQPQDV N-SFAGGHPG LFQDSKNSDL YSIMKNLGID ENSBTAP00000010187/1-844 VPMGSDSILK HEQISQSQDM NPTLSGDHTG LFADNRNSDL YNIMKHLGID ENSTTRP00000006540/1-839 APVGSDNILK HEQIGQSQEM NPTLSGDHAG LFPDNRNSDL YSIMKHLGID bmy_01839T0/1-850 APMGSDNILK HEQIGQSQEM NPTVSGDHAG LFPDNRNSDL YSIMKHLGID BACU000468/1-824 APMGSDNILK HEQIGQSQEM NPTVSGDHAG LFPDNRNSDL YSIMKHLGID 551 600 ENSP00000242057/1-848 FEDIRHM-QN EKFFRNDFSG EVDFRDIDLT DEILTYVQDS LSKSPFIPSD ENSBTAP00000010187/1-844 FEDIEHMQQN EEFFRTDFSG EDDFRDIDLT DEILTYVEDS LNKPAFGCSG ENSTTRP00000006540/1-839 FEDIKHMQQN EEFFRSDFSG E-DFRDIDLT D-ILTY-RDS LNXXXXXXXX bmy_01839T0/1-850 FEDIKHMQQN EEFFRTDFSG EDDFRDIDLT DEILTYVEDS LNKSAFGCSG BACU000468/1-824 FEDIKHMQQN EEFFRTDFSG EDDFRDIDLT DEILTYVEDS LNKSAFGCSA 601 650 ENSP00000242057/1-848 YQQQQSLALN SSCMVQEHLH LEQQQ--QHH QKQVVVEPQQ QLCQKMKHMQ ENSBTAP00000010187/1-844 YPQQPSMALN PSCMVQEQLQ LDQQQ-LQPH QRHTTVEQQQ QLCQKMKHMQ ENSTTRP00000006540/1-839 XXXXXXX--- XXXXXXXXXX XXQQEQLQQH QKHRAVEQQQ QLCQKMQHMQ bmy_01839T0/1-850 CHQQQSMALN PSCMVQEHLR LEQQEQLQHH QQHTAAE-QQ QLCQKMKHMQ BACU000468/1-824 ---------- RLTAVQCLFR LT-------- ---------- ---------- 651 700 ENSP00000242057/1-848 VNGMFENWNS NQFVPFNCPQ QDPQQYNVFT DLHGISQEFP YKSEMDSMPY ENSBTAP00000010187/1-844 VNSMFANWNA NQSVPLNCPQ QDLQQY-VFA DLPGTSQEFP YKPELDPMPY ENSTTRP00000006540/1-839 VNGMFANWNS NQSVPFNCPQ QDLQQYNVFS DVPGTSQE-C YKSEIDTMPY bmy_01839T0/1-850 VNGMFANWNS DQSVPFNCPQ QDLQQYSVFS DLPGTSQEFP YKAEFDTMPY BACU000468/1-824 -------WDQ SRV------- ---------- -------SXX YKAEIDTLPY 701 750 ENSP00000242057/1-848 TQNFISCNQP VLPQHSKCTE LDYPMGSFEP SPYPTTSS-L EDFVTCLQLP ENSBTAP00000010187/1-844 PQNLIPYSQP GLPPQPQGAQ LDFPMGDFEP APYPTTASNL EDFVSCLQVP ENSTTRP00000006540/1-839 AQNFIPCGQS VLPPHSKGTQ LDFPIGDFEP APYPTTSSNL EDFVTCLQVP bmy_01839T0/1-850 AQNFIPCSQS VLPPHSKGTQ LDFPIGDFEP APYPTTSSHL EDFVTCLQVP BACU000468/1-824 AQNFIPCSQS VLPPRSEGTQ LDFPIGDFEP APYPTPSSNL EDFVTCLQVP 751 800 ENSP00000242057/1-848 ENQKHGLNPQ SAIITPQTCY AGAVSMYQCQ PEPQHTHVGQ MQYNPVL--- ENSBTAP00000010187/1-844 ENQQHGLNPQ SAMVAPQTCY AGAVSMYQCQ PDPQHSQLAQ MQYNPTT--- ENSTTRP00000006540/1-839 QSQRHGLNPQ SAIVTPETCY AGAVSMYQCQ PEAQHSHVAQ MQYNPTM--- bmy_01839T0/1-850 QNQKHGLNPQ SALLTPQTCY AGAVSMYQCQ PEAQHSHVAQ MQYNPTMPGP BACU000468/1-824 QNQKHGLNPQ SALVTPQTCY AGAVSMYQCQ PEAQHSHVAQ MQYNPTMPGP 801 850 ENSP00000242057/1-848 -------PGQ QAFLNK---- ---------- -FQNG-VLNE TYPAELNNIN ENSBTAP00000010187/1-844 -------PGS QAVVNK---- ---------- -FQNGAILNE TYPAELNSMR ENSTTRP00000006540/1-839 -------PGP QAFLNK---- ---------- -FQNGGVLNE TYPAELNSIN bmy_01839T0/1-850 TM-----PGP QAFLNK---- ---------- -FQNGGVLNE TYPAELNSIN BACU000468/1-824 TMPGPTVPGP QAFLNKSNGF ISMNDFNLPP CHQACRTLTR DVSYSLTRLG 851 900 ENSP00000242057/1-848 NTQ------- -------TTT HLQPLHHPSE ARPFPDLTSS GFL------- ENSBTAP00000010187/1-844 NTE------- -------PAT RL----HPSE ARPYPDLTSS GFL------- ENSTTRP00000006540/1-839 NTQ------- -------PTT HL----HPSE ARPFSDLTSS GFL------- bmy_01839T0/1-850 NTQ------- -------PTA HL----HPSE ARPFPDLTSS GFL------- BACU000468/1-824 NISQVPSQCP QRTMLPVPLI RL----KPSK PHSTSEVCLY FHLNNTTVRC 901 950 ENSP00000242057/1-848 - ENSBTAP00000010187/1-844 - ENSTTRP00000006540/1-839 - bmy_01839T0/1-850 - BACU000468/1-824 S