KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:21 2014 Check: 00 .. Name: ENSP00000386239/1-1378 Len: 1538 Check: 3565 Weight: 1.00 Name: ENSBTAP00000010191/1-1374 Len: 1538 Check: 8464 Weight: 1.00 Name: ENSTTRP00000001824/1-1206 Len: 1538 Check: 5330 Weight: 1.00 Name: bmy_07560T0/1-1529 Len: 1538 Check: 1337 Weight: 1.00 Name: BACU001452/1-1402 Len: 1538 Check: 5488 Weight: 1.00 // 1 50 ENSP00000386239/1-1378 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010191/1-1374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001824/1-1206 ---------- ---------- ---------- ---------- ---------- bmy_07560T0/1-1529 MRDAGCGAGW GGLSSRGRPR SPWRRPPLFR PQRQPYYNYQ DASGGWTTLP BACU001452/1-1402 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000386239/1-1378 ---------- ---------- ---------- -------MSL ERELRQLSKA ENSBTAP00000010191/1-1374 ---------- ---------- ---------- -------MSL ERELRQLSKA ENSTTRP00000001824/1-1206 ---------- ---------- ---------- ---------- ---------- bmy_07560T0/1-1529 GILRARTGPA RWAWAGGGCR GGARAREVRN PRHGDRSMSL DRELRQLSKA BACU001452/1-1402 ---------- ---------- ---------- -------MSL DRELRQLSKA 101 150 ENSP00000386239/1-1378 KAKAQRAGQR REEAALCHQL GELLAGHGRY AEALEQHWQE LQLRERADDP ENSBTAP00000010191/1-1374 KTKAQRSGQL REEASVCHQL GELLASHGCY AEALREHQQE LQLLETTDDP ENSTTRP00000001824/1-1206 ---------- ---------- ---------- ---------- ---------- bmy_07560T0/1-1529 KAKAQRSGQL REEAAVCHQL GELLASHGCY AEALREHQQE LQLLETADDP BACU001452/1-1402 KAKAQRSGQL REEAAVCHQL GELLASHGCY AEALREHQQE LQLLETANDP 151 200 ENSP00000386239/1-1378 LGCAVAHRKI GERLAEMEDY PAALQHQHQY LELAHSLRNH TELQRAWATI ENSBTAP00000010191/1-1374 LGCAVAHRKI GERLAEMEDY SAALQHQHRY LELACALSNH VEQQRAWATI ENSTTRP00000001824/1-1206 ---------- ---------- ---------- ---------- ---------- bmy_07560T0/1-1529 LGCAVAHRKI GERLAETEDY SAALQHQHRY LELACSLSNH VEQQRAWATI BACU001452/1-1402 LGCAVAHRKI GERLAEMEDY SAALQHQHRY LELACSLSNH VEQQRAWATI 201 250 ENSP00000386239/1-1378 GRTHLDIYDH CQSRDALLQA QAAFEKSLAI VDEELEGTLA QGELNEMRTR ENSBTAP00000010191/1-1374 GRTHLDIYDH HQSQDALQQA QDAFEKSLAI LDEKLQGSLP KRELSEMRTR ENSTTRP00000001824/1-1206 ---------- ---------- ---------- ---------- ------MRTR bmy_07560T0/1-1529 GRTHLDIYDH HQSQDALLQA QGAFEKSLAI VDEKLQGSLA KRELSEMRTR BACU001452/1-1402 GRTHLDVYDH HQSQDALLQA QGAFEKSLAI VDEKLQGSLA KRELSEMRTR 251 300 ENSP00000386239/1-1378 LYLNLGLTFE SLQQTALCND YFRKSIFLAE QNHLYEDLFR ARYNLGTIHW ENSBTAP00000010191/1-1374 IYLNLGLTCE SLQQVALCSA YFKKSIFLAE QNHLYEDLFR ARYNLGAIHW ENSTTRP00000001824/1-1206 LYLNVGLTCD SLQQAALCHA YFTKSIFLAE QNHLYEDLFR ARYNLGAIHW bmy_07560T0/1-1529 LYLNVGLTCD SLQQAALCHA YFTKSIFLAE QNHLYEDLFR ARYNLGAIHW BACU001452/1-1402 LYLNVGLTCD SLQQAALCHA YFTKSIFLAE QNHLYEDLFR ARYNLGAIHW 301 350 ENSP00000386239/1-1378 RAGQHSQAMR CLEGARECAH TMRKRFMESE CCVVIAQVLQ DLGDFLAAKR ENSBTAP00000010191/1-1374 RRGQHSQAMR CLEGARECAR VLKQAFLESE CCLLLSQVLL DLGDFLAAKR ENSTTRP00000001824/1-1206 RRGQHSQAMR CLEGARKCAR TLKQGSMESE CCLLLSEVLQ DLGDFLAAKR bmy_07560T0/1-1529 RRGQHSQAMR CLEGARKCAR ILKQGSLESE CCLLLSQVLQ DLGDFLAAKR BACU001452/1-1402 RRGQHSQAMR CLEGARKCAR ILKQGSLESE CCLLLSQVLQ DLGDFLAAKR 351 400 ENSP00000386239/1-1378 ALKKAYRLGS QKPVQRAAIC QNLQHVLAVV RLQQQLEEAE GRDPQGAMVI ENSBTAP00000010191/1-1374 ALKKAYRLGS QKPLQKASVC RTLKYVLAVV QLQQRLEESE ESDPEVAMGI ENSTTRP00000001824/1-1206 ALKKAYRLGS QKPLQKAVVC RTLKYVLAVV RLQQQLEESE ESDPRGAMGI bmy_07560T0/1-1529 ALKKAYRLGS QKPLQKALVC RTLKYVLAVV RLQQELEEAE ESDPRGAMGI BACU001452/1-1402 ALKKAYRLGS QKPLQKALVC RTLKYVLAVV RLQQELEEAE ESDPPGAVGI 401 450 ENSP00000386239/1-1378 CEQLGDLFSK AGDFPRAAEA YQKQLRFAEL LDRPGAERAI IHVSLATTLG ENSBTAP00000010191/1-1374 CEQLGDLFSK AGDFPKAAAA YQKQLRFAEL LSRPGPELAV IHVSLAATLG ENSTTRP00000001824/1-1206 CEQLGDLFSK AGDFPKAAAA YQKQLQFAEL LNRPGPELAV IHVSLAATLG bmy_07560T0/1-1529 CEQLGDLFSK AGDFPKAAAA YQKQLQFAEL LNRPGPELAV IHVSLAATLG BACU001452/1-1402 CEQLGDLFSK VGDFPKAAAA YQKQLQLAEL LNRPGPELAV IHVSLAATLG 451 500 ENSP00000386239/1-1378 DMKDHHGAVR HYEEELRLRS GNVLEEAKTW LNIALSREEA GDAYELLAPC ENSBTAP00000010191/1-1374 DMKDHRQAVH HYEAELKLQE GNPLEEAKTW LNIALSREEA GDAYEVLALC ENSTTRP00000001824/1-1206 DMKDHRQAVR HYEEELRLRD GSALEEAKTW LNIALSREDA GDAYEVLAPC bmy_07560T0/1-1529 DMKDHRQAVR HYEEELRLRD GNALEEAKTW LNIALSREDA GDAYEVLAPC BACU001452/1-1402 DMKEHRQAVR HYEEELRLRD GSALEEAKTW LNIALSREDA GDAYEVLAPC 501 550 ENSP00000386239/1-1378 FQKALSCAQQ AQRPQLQRQV LQHLHTVQLR LQPQEAPETE TRLRELSVAE ENSBTAP00000010191/1-1374 FQKALGCAQL AGQPQLQRQI LQHLHAVQLR LQPQEAPSTE TRLQELKAA- ENSTTRP00000001824/1-1206 FQKALSCAQQ AQQPRLQRQV LRHLHAVQLR LQPQEALGTE ARLQELRAAE bmy_07560T0/1-1529 FQKALSCAQQ AQQPRLQRQV LRHLHAVQLR LQPQEAPGTE ARLQELRPAE BACU001452/1-1402 FQKALSCAQQ AQQPRLQRQV LRHLHAVQLR LQPQEAPGTE ARLQELRPAE 551 600 ENSP00000386239/1-1378 DEDEEEEAEE AAATAESEAL EAGEVELSEG EDDTDGLTPQ LEEDEELQGH ENSBTAP00000010191/1-1374 GDEDEGDGED EEDEEDDDAL EATELELSES ENEADA-SPP LEEDEELRGC ENSTTRP00000001824/1-1206 DEEDEGDEDD EDDEGESAAL EAIEVELSES EDEVDG-SQR LEE-EELQGC bmy_07560T0/1-1529 GEEEEGDEED EEDEGDDAAL EAIEVELSES EDEADG-SQR LEEEEELRGC BACU001452/1-1402 GEEEEGDEED EEDEGDAAAL EAIEVELSES EDEADG-SQR LEEEEELRGC 601 650 ENSP00000386239/1-1378 LGRRKGSK-- ---------- ---------- ---------- -WNRRNDMGE ENSBTAP00000010191/1-1374 LGRQRVNK-- ---------- ---------- ---------- -WSRRNDVGE ENSTTRP00000001824/1-1206 LGRRRVSK-- ---------- ---------- ---------- -WNRRNDVGE bmy_07560T0/1-1529 LGQRRVSKVR TAAERVCRPP LRASAALSPH AYAPTGRLCP QWNRRNDVGE BACU001452/1-1402 LGQRRVSKVR TAAEWVWRPP LRASAALSPH AYAPTGRLCP QWNRRNDVGE 651 700 ENSP00000386239/1-1378 TLLHRACIEG QLRRVQDLVR QGHPLNPRDY CGWTPLHEAC NYGHLEIVRF ENSBTAP00000010191/1-1374 TLLHRACIEG QLGRVQDLVR QGHPLNPRDY CGWTPLHEAC NYGHLDIVRF ENSTTRP00000001824/1-1206 TLLHRACIEG QLGRVQDLVR QGHPLNPRDY CGWTPLHEAC NYGHLDIVRF bmy_07560T0/1-1529 TLLHRACIEG QLGRVQDLVR QGHPLNPRDY CGWTPLHEAC NYGHLDIVRF BACU001452/1-1402 TLLHRACIEG QLGRVQDLVR QGHPLNPRDY CGWTPLHEAC NYGHLDIVRF 701 750 ENSP00000386239/1-1378 LLDHGAAVDD PGGQGCEGIT PLHDALNCGH FEVAELLLER GASVTLRTRK ENSBTAP00000010191/1-1374 LLDHGAAVDD PGGQGCDGIT PLHDALNCGH FEVAELLIER GASVTLRTRK ENSTTRP00000001824/1-1206 LLDHGAAVDD PGGQGCEGIT PLHDALNCGH FEVAQLLIER GASVTLRTRK bmy_07560T0/1-1529 LLDHGAAVDD PGGQGCEGIT PLHDALNCGH FEVAQLLIER GASVTLRTRK BACU001452/1-1402 LLDHGAAVDD PGGQGCEGIT PLHDALNCGH FEVAQLLIER GASVTLRTRK 751 800 ENSP00000386239/1-1378 GLSPLETLQQ WVKLYRRDLD LETRQKARAM EMLLQAAASG QDPHSSQA-- ENSBTAP00000010191/1-1374 GHNPLETLQQ WVKLYGKDLD SETQEKAAAM GRLLQAASLG RAPHSSQAP- ENSTTRP00000001824/1-1206 GRSPLETLQQ WVKLYCKDLD GETREKAAAM ETLLQAASSG QAPHSSLAP- bmy_07560T0/1-1529 GRSPLETLQQ WVKLYCKDLD GETREKAAAM ETLLQAASSG QGTRGPPLPL BACU001452/1-1402 GRSPLETLQQ WVKLYCKDLD GETREKAAAM ETLLQAASSG QAPHSSLAP- 801 850 ENSP00000386239/1-1378 ---------- ---------- ---------F HTPSSLLF-- DPETSPPLSP ENSBTAP00000010191/1-1374 ---------- ---------- ---------Q TLPSNHLF-- DPETSPPSSP ENSTTRP00000001824/1-1206 ---------- ---------- ---------P TVPSNHVF-- DPETSPPSSP bmy_07560T0/1-1529 GTSLLSLRVP GALGGGDGAR HCLTIDSISP QLPTAPWLPR PSQTSPPSSP BACU001452/1-1402 ---------- ---------- ---------P TLPSNHLF-- DPETSPPSSP 851 900 ENSP00000386239/1-1378 CPEPPSNSTR LPEASQAHVR VSPGQAAPAM ARPRRSRHGP ASSSSSSEGE ENSBTAP00000010191/1-1374 CPGT------ -PEVCEASTR VSQGLAVSTV ARPRRSRH-K VASSSSSEGE ENSTTRP00000001824/1-1206 SPGP------ -PEACQARAR VSQGLAVPAA ARPRRSRH-K LASGGSSDGE bmy_07560T0/1-1529 SPGP------ -PEACQASAR VSQGLAVPAA ARPWRSRH-K LASSSSSEGE BACU001452/1-1402 SPGP------ -PEACQASAR VSQGLAVPAA ARPWRSRH-K LASSSSSEGE 901 950 ENSP00000386239/1-1378 DSAGPARPSQ KRPRCSATAQ RVAAWTPGPA SNREAATAST SRAAYQAAIR ENSBTAP00000010191/1-1374 DSAGPSQPTQ KRPRHASPSL QTKAPMPGPA SDREAATTST SWAAYREAIR ENSTTRP00000001824/1-1206 ENPGPPRPPQ KRPR------ -----MPSPA SDGEAATASA GWAAYRAAIR bmy_07560T0/1-1529 DNPGPPQPTQ KRLRHSGPSL PATARMPGPA SDGEAATASA GWAAYRAAVG BACU001452/1-1402 DSPGPPQPTQ KRLRHSGPSL PATARMPGPA RDGEAAS--- -----RAAVG 951 1000 ENSP00000386239/1-1378 GVGSAQS-RL GPGPPRGHSK ALAPQAALIP EEECLAGDWL ELDMPLTRSR ENSBTAP00000010191/1-1374 GVGSAQTCRL GPSPLRGPSE IPIPQAALIP QEECLAGDWL EEDFPMSPGH ENSTTRP00000001824/1-1206 SVGSAQRYHL RPSPPRGPGE APSPRAALLP EEECLAGDWL EEDLPLAHGH bmy_07560T0/1-1529 GAGSAQSCRL GPSPPRGPGE APTPRAAPLP KEECLAGDWL EEDLPLARGH BACU001452/1-1402 SAGSAQSCRL GPSPPRGPGE APTPWAALLP KEECLAGDWL EEDLPLARGH 1001 1050 ENSP00000386239/1-1378 R----PRPRG TGD-NRRPSS TSGSDSEESR PRARAKQVRL TCMQSCSAPV ENSBTAP00000010191/1-1374 RGRCPARPQS SGDGGRHRAS GPGSDT-ARR PRAQARQSRL PYLESWSTPV ENSTTRP00000001824/1-1206 GGSYPPRPHS SADGSRHSAS GSGSEASAIR PRARARKSRL SRLKSWSARV bmy_07560T0/1-1529 RGSHLPRPRS SADSSRHSAS GSGSDASAIR PRARARQSRL SSLKRWSAVV BACU001452/1-1402 RGSHPPRPRS SAGGSRHSAS GSGSDASAIR PRARARQSRL SCLKRWSAVV 1051 1100 ENSP00000386239/1-1378 NA-GPSSLAS EPPGSPSTPR VSEPSGDSSA AGQPLGPAPP PPIRVRVQVQ ENSBTAP00000010191/1-1374 RADRANSQAT EPARSPDVPR VVAPTGENPT TGHLPGQVLP PPIRVRVRVQ ENSTTRP00000001824/1-1206 RADGACSSAA EPPRSPDVPR ALEPIGGSPA AGQPLGQALL PPIRVRVRVQ bmy_07560T0/1-1529 RADAACSSAT EPPRSPAVPR ALGPIGGNPA AGQPLGQALL PPIRVRVRVQ BACU001452/1-1402 RADAACSSAA EPARSPYVPR ALGPTGGNPA AGQPLGQALL PPIRVRVRVQ 1101 1150 ENSP00000386239/1-1378 DHLFLIPVPH SSDTHSVAWL AEQAAQRYYQ TCGLLPRLTL RKEGALLAPQ ENSBTAP00000010191/1-1374 DNLFLIPVPH -REAHSVAWL AEQAAQRHYQ ASGLLPRLSL QKEGALLAPQ ENSTTRP00000001824/1-1206 HNLFLIPVPQ SRETHSVAWL AEQAAQRYYQ ASGLLPRLSL QKEGALLAPQ bmy_07560T0/1-1529 NNLFLIPVPH SRETHSVAWL AEQAAQRYYQ ASGLLPRLSL QKEGALLAPQ BACU001452/1-1402 DNLFLIPVPH SRETHSVAWL AEQAAQRYYQ ASGLLPRLSL QKEGALLAPQ 1151 1200 ENSP00000386239/1-1378 DLIPDVLQSN DEVLAEVTSW DLPPLTDRYR RACQSLGQGE HQQVLQAVEL ENSBTAP00000010191/1-1374 DPIPDVLQSN EEVLAEVTSW DLPPLRDRYR RACQTLEQGE HQQVLQAVEH ENSTTRP00000001824/1-1206 DPISDVLQSN EEVLAEVTSW DLPPLTDRYR RACQSLEQGA HQHVLQAMEQ bmy_07560T0/1-1529 DPISDVLQSN EEVLAEVTSW DLPPLTDRYR RACQSLEQGE HHQVLQATEH BACU001452/1-1402 DPISDVLQSN EEVLAEVTSW DLPPLTDRYR RACQSLEQGE HQQVLQATER 1201 1250 ENSP00000386239/1-1378 QGLGLSFSAC SLALDQAQLT PLLRALKLHT ALRELRLAGN RLGDKCVAEL ENSBTAP00000010191/1-1374 QGSAPTFSAC SLALRQAQLT PLLRALKLHS ALRELRLAGN RLGDGCVAEL ENSTTRP00000001824/1-1206 QGSGPAFSAC SLALRQAQLT PLLRALKLHS ALRELRLAGN RLGDGCVAEL bmy_07560T0/1-1529 QGSGPAFSAC SLALRQAQLT PLLRALKLHS ALRELRLAGN RLGDGCVAEL BACU001452/1-1402 QGSGPAFSAC SLALRQAQLT PLLRALKLHS VLRELRLAGN RLGDGCVAEL 1251 1300 ENSP00000386239/1-1378 VAALGTMPSL ALLDLSSNHL GPEGLRQLAM GLPGQATLQS LEELDLSMNP ENSBTAP00000010191/1-1374 LATLDTVPGL TLLDLSSNHL GPEGLRQLAA GLLGQTTLQN LEELDLSMNP ENSTTRP00000001824/1-1206 LAALDTVPGL TLLDLSSNHL GAEGLRQLAV GLQGQPALQN LEELDLSMNP bmy_07560T0/1-1529 LAALDTVPGL TVLDLSSNHL GPEGLRQLAV GLLGQSALQN LEELDLSMNP BACU001452/1-1402 LAALDTVPGL TLLDLSSNHL GPEGLCQLAA GLLGQSALQN LEELDLSMNP 1301 1350 ENSP00000386239/1-1378 LGDGCGQSLA SLLHACPLLS TLRLQACGFG PSFFLSHQTA LGSAFQDAEH ENSBTAP00000010191/1-1374 LGDGCGQALA SILRACPVLC TLHLQACGFG PGFFLSHQVA LGSAFQDTKC ENSTTRP00000001824/1-1206 LGDGCGQALA SILRACPLLS TLHLQACGFG RSFFLNHQAA LRSAFQGAKC bmy_07560T0/1-1529 LGDGCGQALA SILRACPLLS TLHLQACGFG PSFFLNHQAA LGSAFQGAKC BACU001452/1-1402 LGDGCGQALA SILRACPLLS TLHLQACGFG PSFFLNHQAA LGSAFQGAKC 1351 1400 ENSP00000386239/1-1378 LKTLSLSYNA LGAPALARTL QSLPAGTLLH LELSSVAAGK GDSDLMEPVF ENSBTAP00000010191/1-1374 LKTLSLSYNG LGPTALGPVL GSLPAHSLLR LELSSVVTGK SDVGLTDPVV ENSTTRP00000001824/1-1206 LKTLSLSYNG LGASALAQAL QSLPARTLLR LELSSVAASK SDPGLTEPVV bmy_07560T0/1-1529 LKTLSLSYNG LGTSALAQAL RSLPASTLLR LELGSVAAGK XDPGLTEPVV BACU001452/1-1402 LKTLSLSYNG LGTSALAQAL RSLPACTLLR LELGSVAASK SDPGLMEPVV 1401 1450 ENSP00000386239/1-1378 RYLAKEGCAL AHLTLSANHL GDKAVRDLCR CLSLCPSLIS LDLSANPEIS ENSBTAP00000010191/1-1374 HYLSQEGCVL EHLSLSANHL GDKDVRALSR CLPLCPSLVS LDLSANPEVS ENSTTRP00000001824/1-1206 SYLTKEGCAL EHLGLSANHL GDEAVRDLSR CLPLCPSLVS LDLSANPKIS bmy_07560T0/1-1529 SYLTKEGCAL EHLGLSANHL GDEAVRDLSR CLPLCPSLVS LDLSANPKIS BACU001452/1-1402 SYLTKEGCAL EHLGLSANHL GDEAVRDLSR CLPLCPSLAS LDLSANPKIS 1451 1500 ENSP00000386239/1-1378 CASLEELLST LQKRPQGLSF LGLSGCAVQG PLGLGLWDKI AAQLRELQLC ENSBTAP00000010191/1-1374 SAGLEELLST LQKRPQGLSF LGLSGCAVQG PLGLDLWDKV VAQLQELQLC ENSTTRP00000001824/1-1206 CAGLEELLSA LQGRPQGLSF LGLSGCAVQG PLGLRLWDNL TVQLQELQLC bmy_07560T0/1-1529 CAGLEELLSA LQGRPQGLSF LGLSGCAVQG PLGLRLWDNL TVQLRELQLC BACU001452/1-1402 CAGLEELLSA LQGRPQGLSF LGLSGCAVQG PLGLRLWDNL TVQLRELQLC 1501 1550 ENSP00000386239/1-1378 SRRLCAEDRD ALRQLQPSRP GPGECTLDHG SKLFFRRL ENSBTAP00000010191/1-1374 TRRLSAEDRN ALHQLLPSQL GPKVCTLDQG PKLFFRHL ENSTTRP00000001824/1-1206 SRRLSAEDRD ALHQLLPSQL GPKACTLDRG PKLFFRHL bmy_07560T0/1-1529 SRRLSAEDRD ALHQLLPSQL GPKACTLDRG PKLFFRHL BACU001452/1-1402 SRRLSAEDRD ALHQLLPSQL GPKACTLDQG PKLFFRHL