KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:22 2014 Check: 00 .. Name: bmy_07557T0/1-424 Len: 889 Check: 4403 Weight: 1.00 Name: ENSP00000301332/1-838 Len: 889 Check: 8211 Weight: 1.00 Name: ENSTTRP00000001828/1-830 Len: 889 Check: 9607 Weight: 1.00 Name: BACU011400/1-462 Len: 889 Check: 5583 Weight: 1.00 Name: ENSBTAP00000010194/1-783 Len: 889 Check: 9547 Weight: 1.00 // 1 50 bmy_07557T0/1-424 ---------- -MGSLETRRS PEATGHNVGE EEPKSAGKRR CGAWTGWALA ENSP00000301332/1-838 MYAFYSLLIY IFYSLFRRDG GAAAAAEPGD PAQRAR-KPR ---------- ENSTTRP00000001828/1-830 MYAFYSLLIY IFYSLFRRDG GAAAAADPGN PAQSARGKPG ---------- BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 -XAFYSLLIY IFYSLFRRDG GAAAAADAEN PAQSARCKPG ---------- 51 100 bmy_07557T0/1-424 LASWNPSRRR ALRSGRRRPR NPARK---ER RRRHSETAEL RDPRAAASGR ENSP00000301332/1-838 ---------- ----GRRRPD LPAPELWTEL TGLAASSEPE DGSEGAAEGR ENSTTRP00000001828/1-830 ---------- ----GRRRPD QPTAELWTEL TGLVGCSESE DGPGGAAEGR BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 ---------- ----SRRRAY QPSAELWTEL TGLVGSSEAE DGSGGGAERC 101 150 bmy_07557T0/1-424 PKSAHRAALW LPL------R LPRRVCDKCP LQARGSPPPR PAHRRAVDRA ENSP00000301332/1-838 AAAVSLEEAL LRL------- AEFLSVQLGA EESCGGPADL GQSGEVPSLL ENSTTRP00000001828/1-830 PAEVSLEEAL VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 PAEVSLEEAL VRL------- AEFLSVQLGA EESFGTPSDL SKPGDVPPLL 151 200 bmy_07557T0/1-424 DRPGRLLGVR GWAGRGSGGP SGRGLTGRGS RASCGVPLSP AGGGRELREF ENSP00000301332/1-838 TVTSQLLALL AWL----RSP RGRQALLQGT QPAPRVRPPS P--------- ENSTTRP00000001828/1-830 XXXXXXXXXX XXX----XXX XXXXXXXXXX XXXXXXXXXX X--------- BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 TVTGQLLALL AWI----RSP RGRQALSQGT QPVSGVQHPP P--------- 201 250 bmy_07557T0/1-424 CRPEQGTPSQ EESPSVSPR- ------GEAQ GQQPPQLEED QRAWQRLEQL ENSP00000301332/1-838 ----DGSTSQ EESPSHFTAV PGEPLGDETQ GQQPLQLEED QRAWQRLEQL ENSTTRP00000001828/1-830 ----XXXXXX XXXXXXXXX- ------XXXX XXXXXXXXXX XXXXXXXXXX BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 ----AGSPLQ EESPSLSPR- ------GEAQ GQQPPQLEED QRAWQRLEQL 251 300 bmy_07557T0/1-424 ILGQLEELKQ QLELQEKELG QLRVGVGATD SEKRVQHLTL ENKALKQSLS ENSP00000301332/1-838 ILGQLEELKQ QLEQQEEELG RLRLGVGATD SEKRVQHLTL ENEALKQSLS ENSTTRP00000001828/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 ILGQLEELKQ QLEHQEEELG QLRLGVGATD SEKRVQHLTL ENKALKQSLS 301 350 bmy_07557T0/1-424 LTRDLLLHWG PAPPNRAS-- ---------- ---------- ----QLGVQE ENSP00000301332/1-838 LMRDLLLHWG PGPPIRAPQE EAEALLELQG RLQEAQDTTE ALRAQLGVQE ENSTTRP00000001828/1-830 XXXXXXXXXX XXXXXXXXXE EAEALLELRG RLQEAQDTTE ALRVQLGVQE BACU011400/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010194/1-783 LTRDLLLHWG PAPHTRAPQE EAEALLELRR RLQEAQDTTE ALRVQLGVQE 351 400 bmy_07557T0/1-424 AQLQGLRGAL RQLQQEAEQN CRRELRQMRA QLAGLRARMA SLRQGCGDLR ENSP00000301332/1-838 VQLQGLQGAL QQLQQETEQN CRRELQQMHG QLAGLRARMA SLRQGCGDLR ENSTTRP00000001828/1-830 VQLQGLRGAL RQLQQEAEQK CRRELQQMRG QLAGLRARMA SLRQGCGDLR BACU011400/1-462 ---------- ---------- -------MRA QLAGLRARMA SLRQGCGDLR ENSBTAP00000010194/1-783 VQLQGLQGAL RQLQQETEQN CRRELQQMRG QLAGLHARMA SLRQGCGDLR 401 450 bmy_07557T0/1-424 GLVSTFTQSC QGSLSEARGQ V--------- ---------- ---------- ENSP00000301332/1-838 GLVSTFTQSC QGSLSEARGQ VSWALGALSS GGPGTQLPEG QQGPPAGCPG ENSTTRP00000001828/1-830 GLVSTFTQSC QGSLSEARGQ VSWALGALSA GGAGTQLLEA QQGPPTGCPG BACU011400/1-462 GLVSTFTQSC QGSLSEARGQ VSWALGALSA GGAGTQLLEA QQEPPTGCPG ENSBTAP00000010194/1-783 GLVSTFTQSC QGSLSEAQGQ VSWALGALSA DGAGSQLAEA RQGPLPGCSG 451 500 bmy_07557T0/1-424 ---------- ---RTTRSPP SHLFSVQP-- ---------- ---------- ENSP00000301332/1-838 RLPELKGNIR VLCRLRPGTS SSLVSVEPGP GGTVTTCYRG RHRRFRLDWV ENSTTRP00000001828/1-830 RLLELKGNIR VLCRLRPGTP SNLVSLEPGP GGTVTTCYRG HQRRFRLDWV BACU011400/1-462 RPLELKGNIR VLCRLRPGTP SSLVSLEPGP GGTVTTCYRG HQRRFRLDWV ENSBTAP00000010194/1-783 RLLELKGNIR VLCRLRPGTP SSLVSLEPGP GGTVTTCYRG HQRRFRLDWV 501 550 bmy_07557T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000301332/1-838 FPPDASQEEV FRELEPAVLS CLRGYSVCIF TYGQTGTGKT YSMEGPPEDP ENSTTRP00000001828/1-830 FPPHASQEEV FRELESAVLS CLGGYSVCIF TYGQTGTGKT YSMEGPPEDP BACU011400/1-462 FPPHASQEEV FRELESAVLS CLGGYSVCIF TYGQTGTGKT YSMEGPPEDP ENSBTAP00000010194/1-783 FPPHASQEEV FRELESAVLS CLGGYSVCIF TYGQTGTGKT YSMEGPPEDP 551 600 bmy_07557T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000301332/1-838 GIVPRALQSL FREMGAGRQH RVTLSMVEIY NEAVRDLLAP GPPERLAVRQ ENSTTRP00000001828/1-830 GIAPRALQSL FREMGTGGQH HVTLSMVEIY NEAVRDLLAP GPPQRLAVRQ BACU011400/1-462 GIAPRALQSL FREMGTGGQH HVTLSMVEIY NEAVRDLLAP GPPQRLAVRQ ENSBTAP00000010194/1-783 GIAPRALQSL FQEMGTGGQH RVTLSMVEIY NEAVRDLLAP GPPQRLAVRQ 601 650 bmy_07557T0/1-424 ---------- ---RHW--PS L--------- ---------- --------GE ENSP00000301332/1-838 GPEGQGGIQV AGLTHWDVPN LETLHQMLKL GRSNRATAAT AMNQRSSRSH ENSTTRP00000001828/1-830 GPAGEGGIQV AGLTHWDVPN LESLHQMLNL GRSNRATAAT AMNQHSSRSH BACU011400/1-462 GPAGEGGIQV AGLTHWDVPN LESLHQMLNL GRSNRATAAT AMNQHSSRSH ENSBTAP00000010194/1-783 GPAGQGGIQV AGLTHWDVPN LESLHQMLSL GRSNRATAAT AMNQRSSRSH 651 700 bmy_07557T0/1-424 PLLSLPFQ-- --PQG----- ---LVSSTAN LRFWNQN--- ---------- ENSP00000301332/1-838 ALVTLTLRAA SPPRAPGTAG TLHLVDLAGS ERARKAGAAG PPRGDPDGAR ENSTTRP00000001828/1-830 ALVTLTLRTA SPSSGPGTAG TLHLVDLAGS ERAWKAGAAG TSHEDRDGAQ BACU011400/1-462 ALVTLTLRTA SPSSGPGTAG TLHLVDLAGS ERAWKAGAAG TSHEDRDGAQ ENSBTAP00000010194/1-783 ALVTLTLRTA SPSRGPGTAG TLHLVDLAGS ERAWKAGTAG TSQEDRDGAQ 701 750 bmy_07557T0/1-424 --------NC VLCKLG---- ---------- ---------- ---------- ENSP00000301332/1-838 RLREAQTINR SLLALGGVMA ALRAHRPHVP FRDSQLTRLL QPALGPGTTA ENSTTRP00000001828/1-830 RLREARTINR SLLALGGVMA ALRARRPHVP LXXXXXXXXX XXXXXXXXXX BACU011400/1-462 RLREARTINR SLLALGGVMA ALRARRPHVP FRDSQLTRLL QPALGPGATA ENSBTAP00000010194/1-783 RLREARTINR SLLALGGVMA ALRARRPHVP FRDSQLTRLL QPALGPGATV 751 800 bmy_07557T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000301332/1-838 VLLLQVGAGA GQVCACRSPP TRARPPAPLA RRSPRGRRIS GRQSAPSSSP ENSTTRP00000001828/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011400/1-462 VLLLQVS--- ---------- ---------T RPEDLGETVC SLKFAERVGR ENSBTAP00000010194/1-783 VLLLQIS--- ---------- ---------T RPEDLGETVC SLKFAERVGR 801 850 bmy_07557T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000301332/1-838 TEWVKWSWGQ PGAAGSRAPP GRLLPSAPTL RSP--GPPAP LRRPLAVLHA ENSTTRP00000001828/1-830 XXXXEWSWGL LGPAGPRAPV RP--PPAPTH HSL--GPPAP PRPRPAALQA BACU011400/1-462 VE-------- LGPARPRRAP RSGTPSSLST DTPLSGTPCT ATPSPGSPPS ENSBTAP00000010194/1-783 VE-------- LGPARPRRAP RSGTPSSLST DTPLSGTPCT PTPSPGSPPS 851 900 bmy_07557T0/1-424 ---------- ---------- ---------- --------- ENSP00000301332/1-838 PVPTTARARL SRPQRACPSS PGSRPCPWGL RPGLCWQRR ENSTTRP00000001828/1-830 PAWTAAPARP WHRRRTCSSC PRS------- GSRLCRQRQ BACU011400/1-462 PGLDSGSSSA LAPPEDLPS- ---------- --------- ENSBTAP00000010194/1-783 PGLDSGSSSA LAPPEDLPS- ---------- ---------