KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 16:40:26 2014 Check: 00 ..
Name: ENSP00000380081/1-530 Len: 534 Check: 2913 Weight: 1.00
Name: ENSBTAP00000010219/1-525 Len: 534 Check: 7325 Weight: 1.00
Name: bmy_12839T0/1-451 Len: 534 Check: 7420 Weight: 1.00
Name: ENSTTRP00000005267/1-521 Len: 534 Check: 7296 Weight: 1.00
//
1 50
ENSP00000380081/1-530 MGSVGSQRLE EPSVAGTPDP GVVMSFTFDS HQLEEA-AEA AQGQGLRARG
ENSBTAP00000010219/1-525 MGSVGSQRPR EASVASMPHG GVVMSFSFDS GHLEEAVAGA TQAQGGRTRG
bmy_12839T0/1-451 MGSVGSQQLQ EPSVASTPHR SVVMSFSFDS GQLEEVVAGV AQAQGSRARG
ENSTTRP00000005267/1-521 MGSVGSQHLQ EPSVASTPHR SVVMS--FDS GPLEEVAAGV AQAQGSRARG
51 100
ENSP00000380081/1-530 VPAFTDTTLD EPVPDDRYHA IYFAMLLAGV GFLLPYNSFI TDVDYLHHKY
ENSBTAP00000010219/1-525 IPIFTNSAAE EPAPDDRYHA IYFAMLLAGV GFLLPYNSFI TDVDYLHHKY
bmy_12839T0/1-451 IPISTDS--- ---------- ---------- ---------- ----------
ENSTTRP00000005267/1-521 IPIFTDSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TDVDYLHHKY
101 150
ENSP00000380081/1-530 PGTSIVFDMS LTYILVALAA VLLNNVLVER LTLHTRITAG YLLALGPLLF
ENSBTAP00000010219/1-525 PGTSIVFDMS LTYILVALVA VLLNNALVER LSLHTRITAG YLLALGPLLF
bmy_12839T0/1-451 -GTSIVFDMS LTYILVALVA VLLNNALVER LSLHTRITAG YLLALGPLLF
ENSTTRP00000005267/1-521 PGTSIVFDMS LTYILVALVA VLLNNALVER LSLHTRITAG YLLALGPLLF
151 200
ENSP00000380081/1-530 ISICDVWLQL FSRDQAYAIN LAAVGTVAFG CTVQQSSFYG YTGMLPKRYT
ENSBTAP00000010219/1-525 ISICDVWLQL FSRDQAYAIN LAAVGTVAFG CTVQQSSFYG YTGMLPKRYT
bmy_12839T0/1-451 ISICDVWLQL FSRDQAYAIN LAAVGTVAFG CT-------- ----------
ENSTTRP00000005267/1-521 ISICDVWLQL FSRDQAYAIN LAAVGTVAFG CTVQQSSFYG YTGMLPKRYT
201 250
ENSP00000380081/1-530 QGVMTGESTA GVMISLSRIL TKLLLPDERA STLIFFLVSV ALELLCFLLH
ENSBTAP00000010219/1-525 QGVMTGESTA GVMVSLSRIL TKLLLPDERA GTLIFFLVSA GLELLCFLLH
bmy_12839T0/1-451 -------GTA GVMVSLSRIL TKLLLPDERA GTLIFFLVSA GLELLCFLLH
ENSTTRP00000005267/1-521 QGVMTGESTA GVMVSLSRIL TKLLLPDERA GTLIFFLVSA GLELLCFLLH
251 300
ENSP00000380081/1-530 LLVRRSRFVL FYTTRP---R DSHRGRPGLG RGYGYRVHHD VVAGDVHFEH
ENSBTAP00000010219/1-525 LLVRGSRFVL YHTARPRHCR PSRRA----- ---GYRVHHD VAAEDVHFEH
bmy_12839T0/1-451 LLVRGSRFVL YHTARP---R PGRRA----- ---GYRVHHD VAAEDVHF--
ENSTTRP00000005267/1-521 LVVRGSRFVL YHTARP---R PSHTA----- ---GYRVHHD VAAEDVHFEH
301 350
ENSP00000380081/1-530 PAPALAPNES PKDSPAHEVT GSGGAYMRFD VPRPRVQRSW PTFRALLLHR
ENSBTAP00000010219/1-525 QGPALANGGS PKDSPAHEVT G-GGAYTRFD VPRPRIRRSW PSFRALLLHR
bmy_12839T0/1-451 -GPGLANGGS PKDSPAHEVT GGGGAYTRFD VPRPRIRRSW PSFRALLLHR
ENSTTRP00000005267/1-521 QGPGLANGGS PKDSPAHEVA GGGGAYTRFD VPRPRTRRSW PSFRALLLHR
351 400
ENSP00000380081/1-530 YVVARVIWAD MLSIAVTYFI TLCLFPGLES EIRHCILGEW LPILIMAVFN
ENSBTAP00000010219/1-525 YVVARVIWAD MLSIAVTYFI TLCLFPGLES EIRHCILGEW LPILLMAVFN
bmy_12839T0/1-451 YVVARVIWAD MLSIAVTYFI TLCLFPGLES EIRHCILGEW LPILIMAVFN
ENSTTRP00000005267/1-521 YVVARVIWAD MLSIAVTYFI TLCLFPGLES EIHHCILGEW LPILIMAVFN
401 450
ENSP00000380081/1-530 LSDFVGKILA ALPVDWRGTH LLACSCLRVV FIPLFILCVY PSGMPALRHP
ENSBTAP00000010219/1-525 LSDFVGKILA ALPMDWRGTH LLACSCLRVV FIPLFILCVY PSGTPALRHP
bmy_12839T0/1-451 LSDFVGKILA ALPMEWRGTH LLACSCLRVV FIPLFILCVY PSSTPALRHP
ENSTTRP00000005267/1-521 LSDFVGKILA ALPMDWQGTH LLACACLRVV FIPLFILCVY PSSTPALRHP
451 500
ENSP00000380081/1-530 AWPCIFSLLM GISNGYFGSV PMILAAGKVS PKQRELAGNT MTVSYMSGLT
ENSBTAP00000010219/1-525 AWPCVLSLLM GISNGYFGSV PMILAAGKVG PKQRELAGNT MTVSYMTGLT
bmy_12839T0/1-451 AWPCVLSLLM GISNGYFGSV PMILAAGKVS PKQRELAGNT MTVSYMTGLT
ENSTTRP00000005267/1-521 AWPCILSLLM GISNGYFGSV PMILAAGKVS PKQRELAGNT MTVSYMTGLT
501 550
ENSP00000380081/1-530 LGSAVAYCTY SLTRDAHGSC LHASTANGSI LAGL
ENSBTAP00000010219/1-525 LGSAVAYCTY SLTRDAHRSC LRPSAANASF PAGL
bmy_12839T0/1-451 LGSAVAYCTY SLTRDAHGSC PDRSAANASF PAGL
ENSTTRP00000005267/1-521 LGSAVAYCTY SLTRDAHGTC PDRSAANASF PAGL