KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:27 2014 Check: 00 .. Name: ENSBTAP00000010224/1-1213 Len: 1647 Check: 7773 Weight: 1.00 Name: ENSP00000373340/1-1220 Len: 1647 Check: 7052 Weight: 1.00 Name: BACU015160/1-1557 Len: 1647 Check: 7115 Weight: 1.00 Name: bmy_00450T0/1-1239 Len: 1647 Check: 9352 Weight: 1.00 Name: ENSTTRP00000009263/1-1219 Len: 1647 Check: 3863 Weight: 1.00 // 1 50 ENSBTAP00000010224/1-1213 MGVDFDVKTF CHNLRATKPP YECPVETCRK VYKSYSGIEY HLYHYDHDNP ENSP00000373340/1-1220 MGVDFDVKTF CHNLRATKPP YECPVETCRK VYKSYSGIEY HLYHYDHDNP BACU015160/1-1557 MGVDFDVKTF CHNLRATKPP YECPVETCRK VYKSYSGIEY HLYHYDHDNP bmy_00450T0/1-1239 MGVDFDVKTF CHNLRATKPP YECPVETCRK VYKSYSGIEY HLYHYDHDNP ENSTTRP00000009263/1-1219 MGVDFDVKTF CHNLRATKPP YECPVETCRK VYKSYSGIEY HLYHYDHDNP 51 100 ENSBTAP00000010224/1-1213 PPPQQTPLRK HKKKGRQSRP ANKQSPSPSE VSQSPSREVM SYAQAQRMVE ENSP00000373340/1-1220 PPPQQTPLRK HKKKGRQSRP ANKQSPSPSE VSQSPGREVM SYAQAQRMVE BACU015160/1-1557 PPPQQTPLRK HKKKGRQSRP ANKQSPTPSE VSQSPSREVM SYAQAQRMVE bmy_00450T0/1-1239 PPPQQTPLRK HKKKGRQSRP ANKQSPTPSE VSQSPSREVM SYAQAQRMVE ENSTTRP00000009263/1-1219 PPPQQTPLRK HKKKGRQSRP ANKQSPTPSE VSQSPSREVM SYAQAQRMVE 101 150 ENSBTAP00000010224/1-1213 VDLHGRVHRI SIFDNLDVVS EDEEAPEEAP ENGSNKENTE TPAATPKSGK ENSP00000373340/1-1220 VDLHGRVHRI SIFDNLDVVS EDEEAPEEAP ENGSNKENTE TPAATPKSGK BACU015160/1-1557 VDLHGRVHRI SIFDNLDVVS EDEEAPEEAP ENGSNKENTE TPAATPKSGK bmy_00450T0/1-1239 VDLHGRVHRI SIFDNLDVVS EDEEAPEEAP ENGSNKENTE TPAATPKSGK ENSTTRP00000009263/1-1219 VDLHGRVHRI SIFDNLDVVS EDEEAPEEAP ENGSNKENTE TPAATPKSGK 151 200 ENSBTAP00000010224/1-1213 HKNKEKRKDS NHHHHHNASA STTPKLPEVV YRELEQDTPD APPRPTSYYR ENSP00000373340/1-1220 HKNKEKRKDS NHHHHHNVSA STTPKLPEVV YRELEQDTPD APPRPTSYYR BACU015160/1-1557 HKNKEKRKDS NHHHHHSASA STTPKLPEVV YRELEQDTPD APPRPTSYYR bmy_00450T0/1-1239 HKNKEKRKDS NHHHHHSASA STTPKLPEVV YRELEQDTPD APPRPTSYYR ENSTTRP00000009263/1-1219 HKNKEKRKDS NHHHHHNASA STTPKLPEVV YRELEQDTPD APPRPTSYYR 201 250 ENSBTAP00000010224/1-1213 YIEKSAEELD EEVEYDMDEE DYIWLDIMNE RRKTEGVSPI PQEIFEYLMD ENSP00000373340/1-1220 YIEKSAEELD EEVEYDMDEE DYIWLDIMNE RRKTEGVSPI PQEIFEYLMD BACU015160/1-1557 YIEKSAEELD EEVEYDMDEE DYIWLDIMNE RRKTEGVSPI PQEIFEYLMD bmy_00450T0/1-1239 YIEKSAEELD EEVEYDMDEE DYIWLDIMNE RRKTEGVSPI PQEIFEYLMD ENSTTRP00000009263/1-1219 YIEKSAEELD EEVEYDMDEE DYIWLDIMNE RRKTEGVSPI PQEIFEYLMD 251 300 ENSBTAP00000010224/1-1213 RLEKESYFES HNKGDPNALV DEDAVCCICN DGECQNSNVI LFCDMCNLAV ENSP00000373340/1-1220 RLEKESYFES HNKGDPNALV DEDAVCCICN DGECQNSNVI LFCDMCNLAV BACU015160/1-1557 RLEKESYFES HNKGDPNALV DEDAVCCICN DGECQNSNVI LFCDMCNLAV bmy_00450T0/1-1239 RLEKESYFES HNKGDPNALV DEDAVCCICN DGECQNSNVI LFCDMCNLAV ENSTTRP00000009263/1-1219 RLEKESYFES HNKGDPNALV DEDAVCCICN DGECQNSNVI LFCDMCNLAV 301 350 ENSBTAP00000010224/1-1213 HQECYGVPYI PEGQWLCRRC LQSPSRAVDC ALCPNKGGAF KQTDDGRWAH ENSP00000373340/1-1220 HQECYGVPYI PEGQWLCRRC LQSPSRAVDC ALCPNKGGAF KQTDDGRWAH BACU015160/1-1557 HQECYGVPYI PEGQWLCRRC LQSPSRAVDC ALCPNKGGAF KQTDDGRWAH bmy_00450T0/1-1239 HQECYGVPYI PEGQWLCRRC LQSPSRAVDC ALCPNKGGAF KQTDDGRWAH ENSTTRP00000009263/1-1219 HQECYGVPYI PEGQWLCRRC LQSPSRAVDC ALCPNKGGAF KQTDDGRWAH 351 400 ENSBTAP00000010224/1-1213 VVCALWIPEV CFANTVFLEP IDSIEHIPPA RWKLTCYICK QRGSGACIQC ENSP00000373340/1-1220 VVCALWIPEV CFANTVFLEP IDSIEHIPPA RWKLTCYICK QRGSGACIQC BACU015160/1-1557 VVCALWIPEV CFANTVFLEP IDSIEHIPPA RWKLTCYICK QRGSGACIQC bmy_00450T0/1-1239 VVCALWIPEV CFANTVFLEP IDSIEHIPPA RWKLTCYICK QRGSGACIQC ENSTTRP00000009263/1-1219 VVCALWIPEV CFANTVFLEP IDSIEHIPPA RWKLTCYICK QRGSGACIQC 401 450 ENSBTAP00000010224/1-1213 HKANCYTAFH VTCAQQAGLY MKMEPVRETG ANGTSFSVRK TAYCDIHTPP ENSP00000373340/1-1220 HKANCYTAFH VTCAQQAGLY MKMEPVRETG ANGTSFSVRK TAYCDIHTPP BACU015160/1-1557 HKANCYTAFH VTCAQQAGLY MKMEPVRETG ANGTSFSVRK TAYCDIHTPP bmy_00450T0/1-1239 HKANCYTAFH VTCAQQAGLY MKMEPVRETG ANGTSFSVRK TAYCDIHTPP ENSTTRP00000009263/1-1219 HKANCYTAFH VTCAQQAGLY MKMEPVRETG ANGTSFSVRK TAYCDIHTPP 451 500 ENSBTAP00000010224/1-1213 GSARRLPALS HSEGEEDEEE EEDEGKSWSS EKVKKAKAKS RIKMKKARKI ENSP00000373340/1-1220 GSARRLPALS HSEGEEDEDE EEDEGKGWSS EKVKKAKAKS RIKMKKARKI BACU015160/1-1557 GSARRLPALS HSEGEEEEEE EEEEGKSWSS EKVKKAKAKS RIKMKKARKI bmy_00450T0/1-1239 GSARRLPALS HSEGEEEEEE EEEEGKSWSS EKVKKAKAKS RIKMKKARKI ENSTTRP00000009263/1-1219 GSARRLPALS HSEGEEEEEE EEEEGKSWSS EKVEKAKAKS RIKMKKARNI 501 550 ENSBTAP00000010224/1-1213 LAEKRAAAPV VSVPCIPPHR LSKITNRLTI QRKSQFMQRL HSYWTLKRQS ENSP00000373340/1-1220 LAEKRAAAPV VSVPCIPPHR LSKITNRLTI QRKSQFMQRL HSYWTLKRQS BACU015160/1-1557 LAEKRAAAPV VSVPCIPPHR LSKITNRLTI QRKSQFMQRL HSYWTLKRQS bmy_00450T0/1-1239 LAEKRAAAPV VSVPCIPPHR LSKITNRLTI QRKSQFMQRL HSYWTLKRQS ENSTTRP00000009263/1-1219 LAE-RAAAPV VSVPCIPPHR LSKITNRLTI QRKSQFMQRL HSYWTLKRQS 551 600 ENSBTAP00000010224/1-1213 RNGVPLLRRL QTHLQSQRNC DQVGRDSEDK NWALKEQLKS WQRLRHDLER ENSP00000373340/1-1220 RNGVPLLRRL QTHLQSQRNC DQVGRDSEDK NWALKEQLKS WQRLRHDLER BACU015160/1-1557 RNGVPLLRRL QTHLQSQRNC DQVGRDSEDK NWALKEQLKS WQRLRHDLER bmy_00450T0/1-1239 RNGVPLLRRL QTHLQSQRNC DQVGRDSEDK NWALKEQLKS WQRLRHDLER ENSTTRP00000009263/1-1219 RNGVPLLRRL QTHLQSQRNC DQVGRDSEDK NWALKEQLKS WQRLRHDLER 601 650 ENSBTAP00000010224/1-1213 ARLLVELIRK REKLKRETIK VQQIAMEMQL TPFLILLRKT LEQLQEKDTG ENSP00000373340/1-1220 ARLLVELIRK REKLKRETIK VQQIAMEMQL TPFLILLRKT LEQLQEKDTG BACU015160/1-1557 ARLLVELIRK REKLKRETIK VQQIAMEMQL TPFLILLRKT LEQLQEKDTG bmy_00450T0/1-1239 ARLL------ --------IK VQQIAMEMQL TPFLILLRKT LEQLQEKDTG ENSTTRP00000009263/1-1219 ARLLVELIRK REKLKRETIK VQQIAMEMQL TPFLILLRKT LEQLQEKDTG 651 700 ENSBTAP00000010224/1-1213 NIFSEPVPLS ------EVPD YLDHIKKPMD FFTMKQNLEA YRYLNFDDFE ENSP00000373340/1-1220 NIFSEPVPLS EVTELDEVPD YLDHIKKPMD FFTMKQNLEA YRYLNFDDFE BACU015160/1-1557 NIFSEPVPLS EVTELDEVPD YLDHIKKPMD FFTMKQNLEA YRYLNFDDFE bmy_00450T0/1-1239 NIFSEPVPLS EVTELDEVPD YLDHIKKPMD FFTMKQNLEA YRYLNFDDFE ENSTTRP00000009263/1-1219 NIFSEPVPLS EVTELDEVPD YLDHIKKPMD FFTMKQNLEA YRYLNFDDFE 701 750 ENSBTAP00000010224/1-1213 EDFNLIVSNC LKYNAKDTIF YRAAVRLREQ GGAVLRQARR QAEKMGIDFE ENSP00000373340/1-1220 EDFNLIVSNC LKYNAKDTIF YRAAVRLREQ GGAVLRQARR QAEKMGIDFE BACU015160/1-1557 EDFNLIVSNC LKYNAKDTIF YRAAVRLREQ GGAVLRQARR QAEKMGIDFE bmy_00450T0/1-1239 EDFNLIVSNC LKYNAKDTIF YRAAVRLREQ GGAVLRQARR QAEKMGIDFE ENSTTRP00000009263/1-1219 EDFNLIVSNC LKYNAKDTIF YRAAVRLREQ GGAVLRQARR QAEKMGIDFE 751 800 ENSBTAP00000010224/1-1213 TGMHIPPSVT GDEAPHHTED -AEEERLVLL ENQKHLPVEE QLKLLLERLD ENSP00000373340/1-1220 TGMHIPHSLA GDEATHHTED AAEEERLVLL ENQKHLPVEE QLKLLLERLD BACU015160/1-1557 TGMHIPHSLA GDEASHHTED ---------- -------VEE QLKLLLERLD bmy_00450T0/1-1239 TGMHIPHSLA GDEASHHTED -AEEERLVLL ENQKHLPVEE QLKLLLERLD ENSTTRP00000009263/1-1219 TGMHIPHSLA GDEASHHTED AAEEERLVLL ENQKHLPVEE QLKLLLERLD 801 850 ENSBTAP00000010224/1-1213 EVNASKQSVG RSRRAKMIKK EMTALRRKLA HQRETGRDGP ERHGPSSRGG ENSP00000373340/1-1220 EVNASKQSVG RSRRAKMIKK EMTALRRKLA HQRETGRDGP ERHGPSSRGS BACU015160/1-1557 EVNASKQSVG RSRRAKMIKK EMTALRRKLA NQRETGRDGP ERHGPSSRGS bmy_00450T0/1-1239 EVNASKQSVG RSRRAKMIKK EMTALRRKLA NQRETGRDGP ERHGPSSRGS ENSTTRP00000009263/1-1219 EVNASKQSVG RSRRAKMIKK EMTALRRKLA TQRETGRDGP ERHGPSSRGS 851 900 ENSBTAP00000010224/1-1213 MTPHPAACDK DGQTDSAAEE SSSQETSKGL GPNMSSTPAL EVGRRTSVLF ENSP00000373340/1-1220 LTPHPAACDK DGQTDSAAEE SSSQETSKGL GPNMSSTPAH EVGRRTSVLF BACU015160/1-1557 LTPHPAACDK DGQTDSAAEE SSSQETSKGL GPNMSSTPAH EVGRRTSVLF bmy_00450T0/1-1239 LTPHPAACDK DGQTDSAAEE SSSQETSKGL GPNMSSTPAH EVGRRTSVLF ENSTTRP00000009263/1-1219 LTPHPAACDK DGQTDSAAEE SSSQETSKGL GPNMSSTPAH EVGRRTSVLF 901 950 ENSBTAP00000010224/1-1213 SKKNPKTAGP PKRPGRPPKN RESQMTPSHG GSPVGPPQLP IMGSLRQRKR ENSP00000373340/1-1220 SKKNPKTAGP PKRPGRPPKN RESQMTPSHG GSPVGPPQLP IMSSLRQRKR BACU015160/1-1557 SKKNPKTAGP PKRPGRPPKN RESQMTPSHG GSPVGPPQLP IMGSLRQRKR bmy_00450T0/1-1239 SKKNPKTAGP PKRPGRPPKN RESQMTPSHG GSPVGPPQLP IMGSLRQRKR ENSTTRP00000009263/1-1219 SKKNPKTAGP PKRPGRPPKN RESQMTPSHG GSPVGPPQLP IMGSLRQRKR 951 1000 ENSBTAP00000010224/1-1213 GRSPRPSSSS DSDSDKSTED PPMDLPANGF SGGNQPVKKS FLVYRNDCSL ENSP00000373340/1-1220 GRSPRPSSSS DSDSDKSTED PPMDLPANGF SGGNQPVKKS FLVYRNDCSL BACU015160/1-1557 GRSPRPSSSS DSDSDKSTED PPMDLPANGF SGGNQPVKKS FLVYRNDCSL bmy_00450T0/1-1239 GRSPRPSSSS DSDSDKSTED PPMDLPANGF SGGNQPVKKS FLVYRNDCSL ENSTTRP00000009263/1-1219 GRSPRPSSSS DSDSDKSTED PPMDLPANGF SGGNQPVKKS FLVYRNDCSL 1001 1050 ENSBTAP00000010224/1-1213 PRSSSDSESS SSSSSSAASD RTSTTPSKQG RGKPSFSRGT FPEDSSEDTS ENSP00000373340/1-1220 PRSSSDSESS SSSSSSAASD RTSTTPSKQG RGKPSFSRGT FPEDSSEDTS BACU015160/1-1557 PRSSSDSESS SSSSSSAASD RTSTTPSKQG RGKPSFSRGT FPEDSSEDTS bmy_00450T0/1-1239 PRSSSDSESS SSSSSSAASD RTSTTPSKQG RGKPSFSRGT FPEDSSEDTS ENSTTRP00000009263/1-1219 PRSSSDSESS SSSSSSAASD RTSTTPSKQG RGKPSFSRGT FPEDSSEDTS 1051 1100 ENSBTAP00000010224/1-1213 GTENEAYSVG TGRGVGHS-- ---------- ---------- ---------- ENSP00000373340/1-1220 GTENEAYSVG TGRGVGHS-- ---------- ---------- ---------- BACU015160/1-1557 GTENEAYSVG TGRGVGHS-- ---------- ---------- ---------- bmy_00450T0/1-1239 GTENEAYSVG TGRGVGHSSK YARPKPGVLG AQCQGLARPR TADPPPLSHS ENSTTRP00000009263/1-1219 GTENEAYSVG TGRGVGHS-- ---------- ---------- ---------- 1101 1150 ENSBTAP00000010224/1-1213 --IVRKSLGR GAGWLSEDED SPLDALDLVW AKCRGYPSYP ALIIDPKMPR ENSP00000373340/1-1220 --MVRKSLGR GAGWLSEDED SPLDALDLVW AKCRGYPSYP ALIIDPKMPR BACU015160/1-1557 ---------- ---------- ---------- ---------- -MIIDPKMPR bmy_00450T0/1-1239 CEVVRKSLGR GAGWLSEDED SPLDALDLVW AKCRGYPSYP ALIIDPKMPR ENSTTRP00000009263/1-1219 --MVRKSLGR GAGWLSEDED SPLDALDLVW AKCRGYPSYP ALIIDPKMPR 1151 1200 ENSBTAP00000010224/1-1213 EGMFHHGVPI PVPPLEVLKL GEQMTQEARE HLYLVLFFDN KRTWQWLPRT ENSP00000373340/1-1220 EGMFHHGVPI PVPPLEVLKL GEQMTQEARE HLYLVLFFDN KRTWQWLPRT BACU015160/1-1557 EGMFHHGVPI PVPPLEVLKL GEQMTQEARE HLYLVLFFDN KRTWQWLPRT bmy_00450T0/1-1239 EGMFHHGVPI PVPPLEVLKL GEQMTQEARE HLYLVLFFDN KRTWQWLPRT ENSTTRP00000009263/1-1219 EGMFHHGVPI PVPPLEVLKL GEQMTQEARE HLYLVLFFDN KRTWQWLPRT 1201 1250 ENSBTAP00000010224/1-1213 KLVPLGVNQD LDKEKMLEGR KSNIRKSVQI AYHRALQHRS K--------- ENSP00000373340/1-1220 KLVPLGVNQD LDKEKMLEGR KSNIRKSVQI AYHRALQHRS K--------- BACU015160/1-1557 KLVPLGVNQD LDKEKMLEGR KSNIRKSVQI AYHRALQHRS KFKHLLEECP bmy_00450T0/1-1239 KLVPLGVNQD LDKEKMLEGR KSNIRKSVQI AYHRALQHRS K--------- ENSTTRP00000009263/1-1219 KLVPLGVNQD LDKEKMLEGR KSNIRKSVQI AYHRALQHRS K--------- 1251 1300 ENSBTAP00000010224/1-1213 ---------V QGEQSSETSD SD-------- ---------- ---------- ENSP00000373340/1-1220 ---------V QGEQSSETSD SD-------- ---------- ---------- BACU015160/1-1557 LSTRHLWAVV PAEETRTGSS CPRALGLLKP GTETLPGSQP PLLGTVARGT bmy_00450T0/1-1239 ---------V QGEQSSETSD SD-------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------V QGEQSSETSD SD-------- ---------- ---------- 1301 1350 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ---------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ---------- BACU015160/1-1557 QINQLPVCPL RNLKANRSDT VTKNHRPEAV LVSLFFVSFS RRWREQSPAH bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ---------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ---------- BACU015160/1-1557 WSGVLADQVW TLTQTEEHLY CTVYRGDKGR VGRPTLEELK AVRQYFQLDV bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ---------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ---------- BACU015160/1-1557 SLVQLYHHWS SVDPHFQEVA QKFQGVRLLQ QDPIECLFSF ICSSNNNIAR bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ---------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ---------- BACU015160/1-1557 ITGMVERLCQ TFGPRLLQLD DVAYHGFPSL QALTGPHVEA QLRKLGLGYR bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ---------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ---------- BACU015160/1-1557 ARYVSASARA ILEERGGLPW LQQLRKAPYE EAHKALCTLP GVGTKVADCI bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ---------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ---------- BACU015160/1-1557 CLMALDKPQA VPVDVHVWQI AQCDYSWHPT TAKGPSPQAN KELGSFFRSL bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSBTAP00000010224/1-1213 ---------- ---------- ---------- ---------- ------- ENSP00000373340/1-1220 ---------- ---------- ---------- ---------- ------- BACU015160/1-1557 WGPYAGWAQA VNSSPPPPPL FSADLRQPHR AQESPAKRRK RCPGPEG bmy_00450T0/1-1239 ---------- ---------- ---------- ---------- ------- ENSTTRP00000009263/1-1219 ---------- ---------- ---------- ---------- -------