KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:29 2014 Check: 00 .. Name: ENSTTRP00000003196/1-884 Len: 937 Check: 5697 Weight: 1.00 Name: ENSBTAP00000010228/1-886 Len: 937 Check: 9470 Weight: 1.00 Name: ENSP00000263956/1-886 Len: 937 Check: 9369 Weight: 1.00 Name: bmy_04448T0/1-892 Len: 937 Check: 8079 Weight: 1.00 Name: BACU014104/1-850 Len: 937 Check: 6290 Weight: 1.00 // 1 50 ENSTTRP00000003196/1-884 ---------- ---------- ---------- ---------- MSGFSPELID ENSBTAP00000010228/1-886 ---------- ---------- ---------- ---------- MSGFSPELID ENSP00000263956/1-886 ---------- ---------- ---------- ---------- MSGFSPELID bmy_04448T0/1-892 SRKDYGSLFL APRRGGSVWE PLLFRFSVSV PGSAHQNPAN MSGFSPELID BACU014104/1-850 ---------- ---------- ---------- ---------- MSGFSPELID 51 100 ENSTTRP00000003196/1-884 YLEGKISFEE FERRREERKT REKKSLQEKG KSSAEENPND SAVPSSSGVD ENSBTAP00000010228/1-886 YLEGKISFEE FERRREERKT REKKSLQEKG KSSVEENPND SEVPSSSGIN ENSP00000263956/1-886 YLEGKISFEE FERRREERKT REKKSLQEKG KLSAEENPDD SEVPSSSGIN bmy_04448T0/1-892 YLEGKISFEE FERRREDRKT REKKSLQEKG KSSAEENPND SAVPSSSGID BACU014104/1-850 YLEGKISFEE FERRREERKT REKKSLQEKG KSSAEENPND SAVPSSSGID 101 150 ENSTTRP00000003196/1-884 CTKSQDEDVN EGETSDGVSK SVHKVFASML GENED--EEE EEDEEEDEEE ENSBTAP00000010228/1-886 STKSQGKDAN EGETSDGVSK SVHKVFASML GENED-EEEE EEEEEEEEEE ENSP00000263956/1-886 STKSQDKDVN EGETSDGVRK SVHKVFASML GENEDDEEEE EEEEEEEEEE bmy_04448T0/1-892 STKSQDNDVN EGETSDGVSK SVHKVFASML GENED--EEE EEEEEEEEEE BACU014104/1-850 STKSQDKDVN EGETSDGVSK SVHKVFASML GENED--EEE EEEEEEEEEE 151 200 ENSTTRP00000003196/1-884 ETPEQPTAGD VFVLEMVLNR ETKKMMKEKR PRSKLPRALR GLMGEANIRF ENSBTAP00000010228/1-886 ETPEQPTAGD VFVLEMVLNR ETKKMMKEKR PRSKLPRALR GLMGEANIRF ENSP00000263956/1-886 ETPEQPTAGD VFVLEMVLNR ETKKMMKEKR PRSKLPRALR GLMGEANIRF bmy_04448T0/1-892 ETPEQPTAGD VFVLEMVLNR ETKKMMKEKR PRSKLPRALR GLMGEANIRF BACU014104/1-850 ETPEQPTAGD VFVLEMVLNR ETKKMMKEKR PRSKLPRALR GLMGEANIRF 201 250 ENSTTRP00000003196/1-884 ARGEREEAIL MCMEIIRQAP LAYEPFSTLA MIYEDQGDME KSLQFELIAA ENSBTAP00000010228/1-886 ARGEREEAIL MCMEIIRQAP LAYEPFSTLA MIYEDQGDME KSLQFELIAA ENSP00000263956/1-886 ARGEREEAIL MCMEIIRQAP LAYEPFSTLA MIYEDQGDME KSLQFELIAA bmy_04448T0/1-892 ARGEREEAIL MCMEIIRQAP LAYEPFSTLA MIYEDQGDME KSLQFELIAA BACU014104/1-850 ARGEREEAIL MCMEIIRQAP LAYEPFSTLA MIYEDQGDME KSLQFELIAA 251 300 ENSTTRP00000003196/1-884 HLNPSDTEEW VRLAEMSLEQ DNIKQAIFCY TKALKYEPTN VRYLWERSSL ENSBTAP00000010228/1-886 HLNPSDTEEW VRLAEMSLEQ DNIKQAIFCY TKALKYEPTN VRYLWERSSL ENSP00000263956/1-886 HLNPSDTEEW VRLAEMSLEQ DNIKQAIFCY TKALKYEPTN VRYLWERSSL bmy_04448T0/1-892 HLNPSDTEEW VRLAEMSLEQ DNIKQAIFCY TKALKYEPTN VRYLWERSSL BACU014104/1-850 HLNPSDTEEW VRLAEMSLEQ DNIKQAIFCY TKALKYEPTN VRYLWERSSL 301 350 ENSTTRP00000003196/1-884 YEQMGDHKMA MDGYRRILNL LSPSDGERFM QLSRDMAXXX XXXXXXXXXX ENSBTAP00000010228/1-886 YEQMGDHKMA MDGYRRILNL LSPSDGERFM QLTRDMAKSY YEANDVTSAI ENSP00000263956/1-886 YEQMGDHKMA MDGYRRILNL LSPSDGERFM QLARDMAKSY YEANDVTSAI bmy_04448T0/1-892 YEQMGDHKMA MDGYRRILNL LSPSDGERFM QLARDMAKSY YEANDVISAI BACU014104/1-850 YEQLGDHKMA MDGYRRILNL LSPSDGERFM QLARDMAKSY YEANDVISAI 351 400 ENSTTRP00000003196/1-884 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVIT DFSGIVLEKK ENSBTAP00000010228/1-886 SIIEEALSKH QGLVSMEDVN IAAELYISNK QYDRALEVIT DFSGIVLEKR ENSP00000263956/1-886 NIIDEAFSKH QGLVSMEDVN IAAELYISNK QYDKALEIIT DFSGIVLEKK bmy_04448T0/1-892 NIIEEAFSKH QGLVSMEDVN IAAELYISNK QYDRALEVIT DFSGIVLEKK BACU014104/1-850 NIIEEAFSKH QGLVSMEDVN IAAELYISNK QYDRALEVIT DFSGIVLEKK 401 450 ENSTTRP00000003196/1-884 TSEEGTSEEN K--------- TGENVSCTIP DGVPIDITVK LMVCLVHLNI ENSBTAP00000010228/1-886 TTEEGTSEEN K--------- GGDNVICAIP DGVPIDITVK LMVCLVHLNI ENSP00000263956/1-886 TSEEGTSEEN K--------- APENVTCTIP DGVPIDITVK LMVCLVHLNI bmy_04448T0/1-892 ATEEGTSEEN KSCSFLCIGE SGENVSCTIP DGVPIDITVK LMVCLVHLNI BACU014104/1-850 TTEEGASEEN K--------- TGENVSCTIP DGVPIDITVK LMVCLVHLNI 451 500 ENSTTRP00000003196/1-884 LEPLNPLLTT LVEQNPEDMG DLYLDVAEAF LDVGEYNSAL PLLSALVCSE ENSBTAP00000010228/1-886 LEPLNPLLTT LVEQNPEDMG DLYLDVAEAF LDVGEYNSAL PLLSALVCSE ENSP00000263956/1-886 LEPLNPLLTT LVEQNPEDMG DLYLDVAEAF LDVGEYNSAL PLLSALVCSE bmy_04448T0/1-892 LEPLNPLLTT LVEQNPEDMG DLYLDVAEAF LDVGEYNSAL PLLSALVCSE BACU014104/1-850 LEPLNPLLTT LVEQNPEDMG DLYLDVAEAF LDVGEYNSAL PLLSALVCSE 501 550 ENSTTRP00000003196/1-884 RYNLAVVWLR HAECLKALGY MERAAESYGK VVDLAPLHLD ARISLSTLQQ ENSBTAP00000010228/1-886 RYNLAVVWLR HAECLKALGY MERAAESYSK VVDLAPLHLD ARISLSTLQQ ENSP00000263956/1-886 RYNLAVVWLR HAECLKALGY MERAAESYGK VVDLAPLHLD ARISLSTLQQ bmy_04448T0/1-892 RYNLAVVWLR HAECLKALGY MERAAESYGK VVDLAPLHLD ARISLSTLQQ BACU014104/1-850 RYNLAVVWLR HAECLKALGY MERAAESYGK VVDLAPLHLD ARISLSTLQQ 551 600 ENSTTRP00000003196/1-884 QLGRPEKALE ALEPMYDPDT LAQDANAAQQ ELKLLLQRST LLFSQGKMYG ENSBTAP00000010228/1-886 QLGRPEKALE ALEPMYDPDT LAQDANAAQQ ELKLLLQRST LLFSQGKMYG ENSP00000263956/1-886 QLGQPEKALE ALEPMYDPDT LAQDANAAQQ ELKLLLHRST LLFSQGKMYG bmy_04448T0/1-892 QLGRPEKALE ALEPMYDPDT LAQDANAAQQ ELKLLLQRST LLFSQGKMYG BACU014104/1-850 QLGRPEKALE ALEPMYDPDT LAQDANAAQQ ---------- ---------- 601 650 ENSTTRP00000003196/1-884 YVDTLLTMLA MLLRVAMNRA QVCLISSSKS GERHLYLIKV SRDKISDNND ENSBTAP00000010228/1-886 YVDTLLTMLA MLLKVAMNRA QVCLISSSKS GERHLYLIKV SRDKISDNND ENSP00000263956/1-886 YVDTLLTMLA MLLKVAMNRA QVCLISSSKS GERHLYLIKV SRDKISDSND bmy_04448T0/1-892 YVDTLLTMLA MLLRVAMNRA QVCLISSSKS GERHLYLIKV SRDKISDNND BACU014104/1-850 ---------- ----VAMNRA QVCLISSSKS GERHLYLIKV SRDKISDNND 651 700 ENSTTRP00000003196/1-884 QESANCDAKA IFAVLTSVLT KDDWWXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000010228/1-886 QESANCDAKA IFAVLTSVLT KDDWWNLLLK AIYSLCDLSR FQEAELLVDS ENSP00000263956/1-886 QESANCDAKA IFAVLTSVLT KDDWWNLLLK AIYSLCDLSR FQEAELLVDS bmy_04448T0/1-892 QESANCDAKA IFAVLTSVLT KDDWWNLLLK AIYSLCDLSR FQEAELLVDS BACU014104/1-850 QESANCDAKA IFAVLTSVLT KDDWWNLLLK AIYSLCDLSR FQEAELLVDS 701 750 ENSTTRP00000003196/1-884 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- XIMVMENVNK ENSBTAP00000010228/1-886 SLEYCSFYED KPKRKELEYF GLSAAILDKN FRKAYNYISF RIMVMENVNK ENSP00000263956/1-886 SLEYYSFYDD RQKRKELEYF GLSAAILDKN FRKAYNYI-- RIMVMENVNK bmy_04448T0/1-892 SLEYYSFYED RPKRKELEYF GLSAAILDKN FRKAYNYI-- RVSV------ BACU014104/1-850 SLEYYSFYED RPKRKELEYF GLSAAILDKN FRKAYNYI-- RIMVMENVNK 751 800 ENSTTRP00000003196/1-884 PQLWNIFNQV TMHSQDVRHH RFCLRLMLKN PDNHALCVLN GHNAFVSGSF ENSBTAP00000010228/1-886 PQLWNIFNQV TMHSQEVRHH RFCLRLMLKN PDNHALCVLN GHNAFVSGSF ENSP00000263956/1-886 PQLWNIFNQV TMHSQDVRHH RFCLRLMLKN PENHALCVLN GHNAFVSGSF bmy_04448T0/1-892 ---------- ----EEIRNY VFV------P PSDITV---- ---------- BACU014104/1-850 PQLWNIFNQV TMHSQDVRHH RFCLRLMLKN PDNHALCVLN GHNAFVSGSF 801 850 ENSTTRP00000003196/1-884 KHALGQYVQA FRSHPHEPLY SLCIGLTFIH MASQKYVLKR HALIVQGFSF ENSBTAP00000010228/1-886 KHVIRQYVQA FRTHPQEPLY NLC-AKTFIH MASQKYVFKR HALIVQGFSF ENSP00000263956/1-886 KHALGQYVQA FRTHPDEPLY SFCIGLTFIH MASQKYVLRR HALIVQGFSF bmy_04448T0/1-892 -HFSGQYVQA FRTHPHEPLY SLCIGLTFIH MASQKYVLRR HALIVQGFSF BACU014104/1-850 KHALGQYVQA FRTHPHEPLY SLCIGLTFIH MASQKYVLRR HALIVQGFSF 851 900 ENSTTRP00000003196/1-884 LNRYLSLRGP CQESFYNLGR GLHQLGLIHL AIHYYQKALE LPPFMVEGME ENSBTAP00000010228/1-886 LNRYLSLRGP CQETFYNLGR ALHQLGLQHL AIHYYQKALE LPPLVVEGIE ENSP00000263956/1-886 LNRYLSLRGP CQESFYNLGR GLHQLGLIHL AIHYYQKALE LPPLVVEGIE bmy_04448T0/1-892 LNRYLSLRGP CQESFYNLGR GLHQLGLIHL AIHYYQKALE LPPFVVEGME BACU014104/1-850 LNRYLSLRGP CQESFYNLGR GLHQLGLIHL AIHYYQKALE LPPFVVEGME 901 950 ENSTTRP00000003196/1-884 VDQLDLRRDI AYNLSLIYQN SGNIGMAQKL LYTYCSI ENSBTAP00000010228/1-886 IDQIDLRRDI AYNLSLIYQN SGNTGMAQKL LFTYCSI ENSP00000263956/1-886 LDQLDLRRDI AYNLSLIYQS SGNTGMAQTL LYTYCSI bmy_04448T0/1-892 VDQLDLRRDI AYNLSLIYQN SGNIGMAQKL LYTYCSI BACU014104/1-850 VDQLDLRRDI AYNLSLIYQN SGNIGMAQKL LYTYCSI