KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:34 2014 Check: 00 .. Name: ENSP00000328036/1-337 Len: 339 Check: 6632 Weight: 1.00 Name: ENSBTAP00000010259/1-337 Len: 339 Check: 8296 Weight: 1.00 Name: BACU001412/1-127 Len: 339 Check: 7904 Weight: 1.00 Name: bmy_08454T0/1-238 Len: 339 Check: 1886 Weight: 1.00 Name: ENSTTRP00000001019/1-332 Len: 339 Check: 7190 Weight: 1.00 // 1 50 ENSP00000328036/1-337 --MAFFSRLN LQEGLQTFFV LQWIPVYIFL GAIPILLIPY FLLFSKFWPL ENSBTAP00000010259/1-337 --MAFLSQLN LQEILQTLSV LQWMPVYVFL GAIPIIVIPY FLVFTKFWMV BACU001412/1-127 --MT------ ---------- ---------- -GTPT----- ---------- bmy_08454T0/1-238 MAMAFLSHLD LQESLQTLPV LQWIPVYVFL EAIPILLIPY FLVFTKVGML ENSTTRP00000001019/1-332 --MAFLSHLD LQESLQTLSV LQWISVYVFL GAIPILLIPY FLVFTKFGML 51 100 ENSP00000328036/1-337 AVLSLAWLTY DWNTHSQGGR RSAWVRNWTL WKYFRNYFPV KLVKTHDLSP ENSBTAP00000010259/1-337 SVLALAWLAY DWNTHSQGGR RSAWVRNWTI WKYFQNYFPI KLVKTHDLSP BACU001412/1-127 ---------- ---------- ---------- ---------V KLVKTHDLCP bmy_08454T0/1-238 SVLALAWLAY DWNTHSQGGR HSTW------ ---------- -LVKTHDLCP ENSTTRP00000001019/1-332 SVLALAWLSY D-NTHSQGGR RSTWVRNWTL WKYF-NFFPV KLVKTHDLCP 101 150 ENSP00000328036/1-337 KHNYIIANHP HGILSFGVFI NFATEATGIA RIFPSITPFV GTLERIFWIP ENSBTAP00000010259/1-337 RHNYIIASHP HGVLPYGTFI NFATETTGFA RIFPGITPYV ATLEGIFWIP BACU001412/1-127 KHNYIIANHP HGILSYGVLI IFATEATGFA RIFPAITPYV GTLEGMFWIP bmy_08454T0/1-238 KHNYIIANHP HGILSYGVFI IFATEATXLA RIFPAITPYV GTLEGIFWIP ENSTTRP00000001019/1-332 KHNYIIANHP HGILSYGVFI IFPT-ATGFA RIFPAITPYV GTLEEIFWIP 151 200 ENSP00000328036/1-337 IVREYVMSMG VCPVSSSALK YLLTQKGSGN AVVIVVGGAA EALLCRPGAS ENSBTAP00000010259/1-337 IVREYVMSMG VCPVSELALK YLLTQKGSGN AVVIMVGGGA EALLCHPGAT BACU001412/1-127 IVRDYVMSM- ---------- ---------- ---------- ---------- bmy_08454T0/1-238 IVRDYVMSMG VCPVSELALK YLLTKKGSGN AVVIVVGGAA EALLCHPGAS ENSTTRP00000001019/1-332 IVRDYVMSMG VCPVSELALK YLLTKKGSGN AVVIVEGGSA EALLCHAGAS 201 250 ENSP00000328036/1-337 TLFLKQRKGF VKMALQTGAY LVPSYSFGEN EVFNQETFPE GTWLRLFQKT ENSBTAP00000010259/1-337 TVLLKQRKGF VKVALETGAY LVPSYSFGQN EVHNQETFPE GTWKRFFQKA BACU001412/1-127 ---------- ---------- ---------- ---------- ---------- bmy_08454T0/1-238 TVLLKQ---- ---------- ---------- ---------- ---------- ENSTTRP00000001019/1-332 TVLLKQHKGF VRLALKTGSY LVPSYSFGEN EVHNQETFTE GTWLRFFQKT 251 300 ENSP00000328036/1-337 FQDTFKKILG LNFCTFHGRG FTRGSWGFLP FNRPITTVVG EPLPIPRIKR ENSBTAP00000010259/1-337 LQDTLKKLLR LSVCTFHGRG LTRGSWGFLP FNHPITTVVG EPLPIPRIKK BACU001412/1-127 ---------- ---------- ---------- --------AG EPLPIPKIKK bmy_08454T0/1-238 ---------- ---------- ---------- --------LG EPLPILKIKK ENSTTRP00000001019/1-332 LQDRIKKTLR LSFCTFHGRG LTRGSWGFLP FNRPITTVAG EPLPIPKIKK 301 350 ENSP00000328036/1-337 PNQKTVDKYH ALYISALRKL FDQHKVEYGL PETQELTIT ENSBTAP00000010259/1-337 PNEETVDKYH ALYINALQKL FDEHKVQYGL SETQELTII BACU001412/1-127 PNKKTVDKYH ALYISALCKL FDQHKLQYGL PETQELTII bmy_08454T0/1-238 ANKKTVDKYH TLYISALCKL FD--KVQYGL PETQELTII ENSTTRP00000001019/1-332 PNKKMVDKYH ALYIRTLCKL FD--KVQYGL PETQELTII