KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:36 2014 Check: 00 .. Name: ENSP00000368190/1-1241 Len: 1403 Check: 4562 Weight: 1.00 Name: ENSBTAP00000010289/1-1241 Len: 1403 Check: 6030 Weight: 1.00 Name: ENSTTRP00000003667/1-1240 Len: 1403 Check: 2931 Weight: 1.00 Name: bmy_05909T0/1-1212 Len: 1403 Check: 7721 Weight: 1.00 Name: BACU000611/1-1290 Len: 1403 Check: 2443 Weight: 1.00 // 1 50 ENSP00000368190/1-1241 MALGTTLRAS LLLLGLLTEG LAQLAIPASV PRGFWALPEN LTVVEGASVE ENSBTAP00000010289/1-1241 MALSTHFKAA LLLLGLLMTG LTQVPILASA PRGFWALPEN LTVVEGAVAE ENSTTRP00000003667/1-1240 LALRLPIWTP LLLLGLLMTG LAQVPVPASA PRGFWALPEN LTVVEGAAAE bmy_05909T0/1-1212 MALRLPIRTP LLLMGLLMTG LAQVPVPASA PRGFWALPEN LTVVEGAAAE BACU000611/1-1290 MALRLPIRTP LLLMGLLMTG LAQVPVPASA PRGFWALPEN LTVVEGAAAE 51 100 ENSP00000368190/1-1241 LRCGVSTPGS AVQWAKDGLL LGPDPRIPGF PRYRLEGDPA RGEFHLHIEA ENSBTAP00000010289/1-1241 LRCGVRAPGS AVQWAKDGLL LGPDPRIPSF PRYRLEGDPA KGEFHLHIEA ENSTTRP00000003667/1-1240 LWCGVSAPGS TVQWAKDGLL LGPDPRIPSF PRYRLQGDPT KGEFHLHIEA bmy_05909T0/1-1212 LWCGVSAPGS TVQWAKDGLL LGPDPRIPSF PRYRLQGDPT K--------- BACU000611/1-1290 LWCGVSAPGS TVQWAKDGLL LGPDPRIPSF PRYRLQGDPT KGEFHLHIEA 101 150 ENSP00000368190/1-1241 CDLSDDAEYE CQVGRSEMGP ELVSPRVILS ILVPPKLLLL TPEAGTMVTW ENSBTAP00000010289/1-1241 CDLSDDAEYE CQVGRSETGP ELVSPRVILS ILVPPKVLQL TPEAGSTVTW ENSTTRP00000003667/1-1240 CDLSDDAGYE CQVSRSETGP ELVSPRVILS ILVPPKVLQL TPEAGSTVTW bmy_05909T0/1-1212 ---------- ---------- ---------- --VPPKVLQL TPEAGSTVTW BACU000611/1-1290 CDLSDDAGYE CQVSRSETGP ELVSPRVILS ILVPPKVLQL TPEAGSTVTW 151 200 ENSP00000368190/1-1241 VAGQEYVVNC VSGDAKPAPD ITILLSGQTI SDISANVNEG SQQKLFTVEA ENSBTAP00000010289/1-1241 VAGQEYTVSC VSGDAKPAPD ITFLLSGQTI SGISANVNEG SQQKLFTTEA ENSTTRP00000003667/1-1240 VAGQEYLVSC VSGDAKPAPD ITFLLSGQTI SDISANVNEG SQEKLFTTEA bmy_05909T0/1-1212 VAGQEYLVSC VSGDAKPAPD ITFLLSGQTI SDISANVNEG SQEKLFTTEA BACU000611/1-1290 VAGQEYLVSC VSGDAKPAPD ITFLLSGQTI SDISANVNEG SQEKLFTTEA 201 250 ENSP00000368190/1-1241 TARVTPRSSD NRQLLVCEAS SPALEAPIKA SFTVNVL--- ---------- ENSBTAP00000010289/1-1241 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SFTMNVL--- ---------- ENSTTRP00000003667/1-1240 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SITMNVL--- ---------- bmy_05909T0/1-1212 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SITMNVL--- ---------- BACU000611/1-1290 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SITMNVLCKW GTESTVGTKD 251 300 ENSP00000368190/1-1241 ---------- ---------- ---------- ---------- --------FP ENSBTAP00000010289/1-1241 ---------- ---------- ---------- ---------- --------FP ENSTTRP00000003667/1-1240 ---------- ---------- ---------- ---------- --------FP bmy_05909T0/1-1212 ---------- ---------- ---------- ---------- --------FP BACU000611/1-1290 REQELGGPGG TGIMEGSDSQ GGNIGVQRQV VGPGKNGWGP QAHDCCSPVP 301 350 ENSP00000368190/1-1241 PGPPVIEWPG LDEGHVRAGQ SLELPCVARG GNPLATLQWL KNGQPVSTAW ENSBTAP00000010289/1-1241 PGPPVIEWPG LDEGQVRAGQ SLELLCTARG GNPLATLQWL KNGQPVSTAW ENSTTRP00000003667/1-1240 PGPPV-EWSG LDEGHARAGQ NLELLCMARR GNPL-TLQWL KNGQPVSTAW bmy_05909T0/1-1212 PGPPVIEWPG LDEGHARAGQ NLELLCMARG GNPLATLQWL KNGQPVSTAW BACU000611/1-1290 PGPPVIEWPG LDEGHARAGQ NLELLCMARG GNPLATLQWL KNGQPVSTAW 351 400 ENSP00000368190/1-1241 GTEHTQAVAR SVLVMTVRPE DHGAQLSCEA HNSVSAGTQE HGITLQVTFP ENSBTAP00000010289/1-1241 GTEHAQAVAR SLLVMIVRPE DHGARLSCEA YNSVSSGIQE RGVTLQVTFP ENSTTRP00000003667/1-1240 GTEHTQAVAR SMLVMIVRPE DHGARLSCEA YNSVSTGIQE RGVTLQVTFP bmy_05909T0/1-1212 GTEHAQAVAR SMLVMIVRPE DHGARLSCEA YNSVSTGIQE RGVTLQVTFP BACU000611/1-1290 GTEHAQAVAR STLVMIVRPE DHGARLSCEA YNSVSTGIQE RGVTLQVTFP 401 450 ENSP00000368190/1-1241 PSAIIILGSA SQTENKNVTL SCVSKSSRPR VLLRWWLGWR QLLPMEETVM ENSBTAP00000010289/1-1241 PSAITILGSA SQSENKNVTL SCITKSSRPR VLLRWWLGWR QLQPSEETVM ENSTTRP00000003667/1-1240 PSAITILGSA SQSENKNVTL SCITKSSRPR VLLRWWLGWR QLLSTEETVM bmy_05909T0/1-1212 PGAITILGSA SQSENKNVTL SCITKSSRPR ---------- ---------- BACU000611/1-1290 PSAITILGSA SQSENKNVTL SCITKSSRPR VLLRWWLGWR QLLPTEETVM 451 500 ENSP00000368190/1-1241 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLILNVKY ENSBTAP00000010289/1-1241 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLTLNVKY ENSTTRP00000003667/1-1240 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLALNVKY bmy_05909T0/1-1212 -GLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLTLNVKC BACU000611/1-1290 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLTLNVKY 501 550 ENSP00000368190/1-1241 ---------- ---------- ---------- ----PAQKLW IEGPPEGQKL ENSBTAP00000010289/1-1241 ---------- ---------- ---------- ----PAQKLW IEGPPEGQRL ENSTTRP00000003667/1-1240 ---------- ---------- ---------- ----PAQKLW IEGPPEGQRL bmy_05909T0/1-1212 EAPPSPGGAP CLRDPHPQAP AGREKPLFLA LPTDPAQKLW IEGPPEGQRL BACU000611/1-1290 ---------- ---------- ---------- ----PAQKLW IEGPPEGQRL 551 600 ENSP00000368190/1-1241 RAGTRVRLVC LAIGGNPEPS LMWYKDSRTV TESRLPQESR RVHLGSVEKS ENSBTAP00000010289/1-1241 RAGNRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQEPR RVQLGSVEKS ENSTTRP00000003667/1-1240 RAGTRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQETR RVQLGSLEKS bmy_05909T0/1-1212 RAGTRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQEPR RVQLGSLEKS BACU000611/1-1290 RAGTRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQEPR RVQLGSLEKS 601 650 ENSP00000368190/1-1241 GSTFSRELVL VTGPSDNQAK FTCKAGQLSA STQLAVQFPP TNVTILANAS ENSBTAP00000010289/1-1241 GSIFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS ENSTTRP00000003667/1-1240 GSTFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS bmy_05909T0/1-1212 GSTFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS BACU000611/1-1290 GSTFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS 651 700 ENSP00000368190/1-1241 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAAPPR RAPFKGSAAA ENSBTAP00000010289/1-1241 TLRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEDVAAQPR RAPFKGSAAA ENSTTRP00000003667/1-1240 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAATPR SAPFKGSAAA bmy_05909T0/1-1212 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAATPR SAPFKGSAAA BACU000611/1-1290 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAATPR SAPFKGSAAA 701 750 ENSP00000368190/1-1241 RSVLLQVSSR DHGQRVTCRA HSAELRETVS SFYRLNVLYR PEFLGEQVLV ENSBTAP00000010289/1-1241 RSVLLRLSSR DHGHRVTCSA HSTELRETVS AFYRLNVLYP PEFLGEQVLV ENSTTRP00000003667/1-1240 RSVLLRMSSR DHGHRVTCRA HSTELRETVS AFYRLNVLYP PEFLGEQVLM bmy_05909T0/1-1212 RSVLLRMSSR DHGHRVTCRA HSTELRETVS AFYRLNVLYP PEFLGEQVLV BACU000611/1-1290 RSVLLRMSSR DHGHRVTCRA HSTELRETVS AFYRLNVLYP PEFLGEQVLV 751 800 ENSP00000368190/1-1241 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSSGALH ENSBTAP00000010289/1-1241 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ ENSTTRP00000003667/1-1240 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ bmy_05909T0/1-1212 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ BACU000611/1-1290 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ 801 850 ENSP00000368190/1-1241 LWNVTRADDG LYQLHCQNSE GTAEARLRLD VHYAPTIRAL QDPTEVNVGG ENSBTAP00000010289/1-1241 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VQYAPTIRAL QDPTEVNVGD ENSTTRP00000003667/1-1240 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VHXXXXXXXX XXXXXXXXXX bmy_05909T0/1-1212 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VHYAPIIRAL QDPTEVNIGG BACU000611/1-1290 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VHYAPIIRAL QDPTEVNIGG 851 900 ENSP00000368190/1-1241 SVDIVCTVDA NPILPGMFNW ERLGEDEEDQ SLDDMEKISR GPTGRLRIHH ENSBTAP00000010289/1-1241 SVDIVCTVDA NPILPEMFNW ERLGEEGEDQ NLDDMEKMSK GSTGRLRIHH ENSTTRP00000003667/1-1240 XXXXXXXXXX XXXXXXXFNW ERLGEEEEDQ SLDDMEKISK GSTGRLRIHH bmy_05909T0/1-1212 SVDI------ ---------- ---GEEEEDQ SLDDMEKISK GSTGRLRIHH BACU000611/1-1290 SVDIVCTVDA NPILPEMFNW ERLGEEEEDQ SLDDMEKISK GSTGRLRIHH 901 950 ENSP00000368190/1-1241 AKLAQAGAYQ CIVDNGVAPP ARRLLRLVVR FAPQVEHPTP LTKVAAAGDS ENSBTAP00000010289/1-1241 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPAP LTKVAAAGDS ENSTTRP00000003667/1-1240 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPSP LTKVAAAGDS bmy_05909T0/1-1212 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPSP LTKVAAAGDS BACU000611/1-1290 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPSP LTKVAAAGDS 951 1000 ENSP00000368190/1-1241 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QGGVHSSLLT ENSBTAP00000010289/1-1241 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QGGVHSSLLT ENSTTRP00000003667/1-1240 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QSGVHSSLLT bmy_05909T0/1-1212 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QSGVHSSLLT BACU000611/1-1290 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QSGVHSSLLT 1001 1050 ENSP00000368190/1-1241 IANVSAAQDY ALFTCTATNA LGSDQTNIQL VSIS------ RPDPPSGLKV ENSBTAP00000010289/1-1241 IANVSAAQDY ALFTCIATNP LGSDHTNIQL VSIS------ RPDPPSGLKA ENSTTRP00000003667/1-1240 IANVSAAQDY ALFTCTATNP LGSDHTDIQL VSIS------ RPDPPLGLKV bmy_05909T0/1-1212 IANVSAAQDY ALFTCTATNP LGSDHTDIQL VSIS------ RPDPPLGLKV BACU000611/1-1290 IANVSAAQDY ALFTCTATNP LGSDHTDIQL VSISMVGGGC RPDPPLGLKV 1051 1100 ENSP00000368190/1-1241 VSLTPHSVGL EWKPGFDGGL PQRFCIRYEA LGTPGFHYVD VVPPQATTFT ENSBTAP00000010289/1-1241 VSMTPYSVGL EWKPGFDGGL PQRFQIRYEA LETPGFLYMD VLPPQATTFT ENSTTRP00000003667/1-1240 VSMTPYSVGL EWKPGFDGGL PQSFQVRYEA LGTPGFLYVN VLPPQATAFT bmy_05909T0/1-1212 VSMTPYSVGL EWKPGFDGGL PQSFQVRYEA LGTLGFLYMN VLPPQATTFT BACU000611/1-1290 VSMTPYSVGL EWKPGFDGGL PQSFQIRYEA LGTPGFLYMN VLPPQATTFT 1101 1150 ENSP00000368190/1-1241 LTGLQPSTRY RVWLLASNAL GDSGLADKGT QLPITTPGLH QPSGEPEDQL ENSBTAP00000010289/1-1241 LTGLQPSTRY RVWLLASNAL GDSGLADKVS QISITTPGLD QPSREPDYQL ENSTTRP00000003667/1-1240 LTGLQPSTRY RVWLLASNAL GDSGIADKGS QISVTTPGLD QPSGEPDYQL bmy_05909T0/1-1212 LTGLQPSTRY RVWLLASNAL GDSGLADKGS QISVTTPGLD QPSGEPDYQL BACU000611/1-1290 LTGLQPSTRY RLWLLASNAL GDSGLADKGS QISVTTP--- ---------- 1151 1200 ENSP00000368190/1-1241 PTEPPS---- ---------- ---------- ---------G PSGLPLLPVL ENSBTAP00000010289/1-1241 PTEQPA---- ---------- ---------- ---------G PSEMPLLPVL ENSTTRP00000003667/1-1240 PTEQPA---- ---------- ---------- ---------G PSKLPLLPVL bmy_05909T0/1-1212 PTEQPAGKSS IPKHPLSPGK NFLVSNPTSS SFLKPVVPTG PSKLPLLPVL BACU000611/1-1290 ---------- ---------- ---------- ---------G PSKLPLLPVL 1201 1250 ENSP00000368190/1-1241 FALGGLLLLS NASCVGGVLW QRRLRRLAEG ISEKTEAG-- ---------- ENSBTAP00000010289/1-1241 LAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTETG-- ---------- ENSTTRP00000003667/1-1240 FAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTEAG-- ---------- bmy_05909T0/1-1212 FAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTEAGKT LGRRIEGDGC BACU000611/1-1290 FAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTEAG-- ---------- 1251 1300 ENSP00000368190/1-1241 ---------- -----SEEDR VRNEYEESQW TGERDTQSST VSTTEAEPYY ENSBTAP00000010289/1-1241 ---------- -----SEEDR VRNEYEESQW TGDRDTRSST VSTTDVEPYY ENSTTRP00000003667/1-1240 ---------- -----SEEDR VRNEYEESQW TGDRDTRSSM VSTTDVEPYY bmy_05909T0/1-1212 QRVNIQLPPC LHPGRSEEDR VKNEYEESQW TGDHDTRSSM VSTTDVEPYY BACU000611/1-1290 ---------- -----SEEDR VRNEYEESQW TGDRDTRSSM VSTTDVEPYY 1301 1350 ENSP00000368190/1-1241 RSLRDFSPQL PPTQEEVSYS RGFTG-EDED MAFPGHLYDE VERTYPPSGA ENSBTAP00000010289/1-1241 HSMRDFSPQL PPTMEEVSYP LG-EALEEEN MAFPGHLYDE VERVYAPSRA ENSTTRP00000003667/1-1240 HSMRDFSPQL PPMLEEVSYP RGVTGLKEEN MAFPGHVYDE LERLYAPSGA bmy_05909T0/1-1212 HSMRDFSPQL PPTLEEVSYP RGLTGLEEEN MTFPGHVYDE VERLYAPSGA BACU000611/1-1290 HSMRDFSPQL PPTLEEVSYP RGLTGLEEEN MTFPGHVYDE VERLYAPSGA 1351 1400 ENSP00000368190/1-1241 WGPLYDEVQM GPWDLHWPED TYQDPRGIYD QVAGDLDTLE PDSLPFELRG ENSBTAP00000010289/1-1241 WGPLYDEVQM DSCDFRWPGD RYEDARGIYD QVAGDLDPVE PDAIPFELRG ENSTTRP00000003667/1-1240 WGPLYDEVPM GSCDLYWPED RYEDARGIYD QVAGDLDPME PDALPFELRG bmy_05909T0/1-1212 WGPLYDEVPM ---------- ---------- ---------- ---------- BACU000611/1-1290 WGPLYDEVPM GSCDLYWPED RYEDARGIYD QVAGDLDPME PDVLPFEMRG 1401 1450 ENSP00000368190/1-1241 HLV ENSBTAP00000010289/1-1241 HLV ENSTTRP00000003667/1-1240 QLV bmy_05909T0/1-1212 --- BACU000611/1-1290 QLV