KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:40:36 2014 Check: 00 ..
Name: ENSP00000368190/1-1241 Len: 1403 Check: 4562 Weight: 1.00
Name: ENSBTAP00000010289/1-1241 Len: 1403 Check: 6030 Weight: 1.00
Name: ENSTTRP00000003667/1-1240 Len: 1403 Check: 2931 Weight: 1.00
Name: bmy_05909T0/1-1212 Len: 1403 Check: 7721 Weight: 1.00
Name: BACU000611/1-1290 Len: 1403 Check: 2443 Weight: 1.00
//
1 50
ENSP00000368190/1-1241 MALGTTLRAS LLLLGLLTEG LAQLAIPASV PRGFWALPEN LTVVEGASVE
ENSBTAP00000010289/1-1241 MALSTHFKAA LLLLGLLMTG LTQVPILASA PRGFWALPEN LTVVEGAVAE
ENSTTRP00000003667/1-1240 LALRLPIWTP LLLLGLLMTG LAQVPVPASA PRGFWALPEN LTVVEGAAAE
bmy_05909T0/1-1212 MALRLPIRTP LLLMGLLMTG LAQVPVPASA PRGFWALPEN LTVVEGAAAE
BACU000611/1-1290 MALRLPIRTP LLLMGLLMTG LAQVPVPASA PRGFWALPEN LTVVEGAAAE
51 100
ENSP00000368190/1-1241 LRCGVSTPGS AVQWAKDGLL LGPDPRIPGF PRYRLEGDPA RGEFHLHIEA
ENSBTAP00000010289/1-1241 LRCGVRAPGS AVQWAKDGLL LGPDPRIPSF PRYRLEGDPA KGEFHLHIEA
ENSTTRP00000003667/1-1240 LWCGVSAPGS TVQWAKDGLL LGPDPRIPSF PRYRLQGDPT KGEFHLHIEA
bmy_05909T0/1-1212 LWCGVSAPGS TVQWAKDGLL LGPDPRIPSF PRYRLQGDPT K---------
BACU000611/1-1290 LWCGVSAPGS TVQWAKDGLL LGPDPRIPSF PRYRLQGDPT KGEFHLHIEA
101 150
ENSP00000368190/1-1241 CDLSDDAEYE CQVGRSEMGP ELVSPRVILS ILVPPKLLLL TPEAGTMVTW
ENSBTAP00000010289/1-1241 CDLSDDAEYE CQVGRSETGP ELVSPRVILS ILVPPKVLQL TPEAGSTVTW
ENSTTRP00000003667/1-1240 CDLSDDAGYE CQVSRSETGP ELVSPRVILS ILVPPKVLQL TPEAGSTVTW
bmy_05909T0/1-1212 ---------- ---------- ---------- --VPPKVLQL TPEAGSTVTW
BACU000611/1-1290 CDLSDDAGYE CQVSRSETGP ELVSPRVILS ILVPPKVLQL TPEAGSTVTW
151 200
ENSP00000368190/1-1241 VAGQEYVVNC VSGDAKPAPD ITILLSGQTI SDISANVNEG SQQKLFTVEA
ENSBTAP00000010289/1-1241 VAGQEYTVSC VSGDAKPAPD ITFLLSGQTI SGISANVNEG SQQKLFTTEA
ENSTTRP00000003667/1-1240 VAGQEYLVSC VSGDAKPAPD ITFLLSGQTI SDISANVNEG SQEKLFTTEA
bmy_05909T0/1-1212 VAGQEYLVSC VSGDAKPAPD ITFLLSGQTI SDISANVNEG SQEKLFTTEA
BACU000611/1-1290 VAGQEYLVSC VSGDAKPAPD ITFLLSGQTI SDISANVNEG SQEKLFTTEA
201 250
ENSP00000368190/1-1241 TARVTPRSSD NRQLLVCEAS SPALEAPIKA SFTVNVL--- ----------
ENSBTAP00000010289/1-1241 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SFTMNVL--- ----------
ENSTTRP00000003667/1-1240 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SITMNVL--- ----------
bmy_05909T0/1-1212 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SITMNVL--- ----------
BACU000611/1-1290 TARVTPQSSD NGQLLVCEGS SPALDTPIKA SITMNVLCKW GTESTVGTKD
251 300
ENSP00000368190/1-1241 ---------- ---------- ---------- ---------- --------FP
ENSBTAP00000010289/1-1241 ---------- ---------- ---------- ---------- --------FP
ENSTTRP00000003667/1-1240 ---------- ---------- ---------- ---------- --------FP
bmy_05909T0/1-1212 ---------- ---------- ---------- ---------- --------FP
BACU000611/1-1290 REQELGGPGG TGIMEGSDSQ GGNIGVQRQV VGPGKNGWGP QAHDCCSPVP
301 350
ENSP00000368190/1-1241 PGPPVIEWPG LDEGHVRAGQ SLELPCVARG GNPLATLQWL KNGQPVSTAW
ENSBTAP00000010289/1-1241 PGPPVIEWPG LDEGQVRAGQ SLELLCTARG GNPLATLQWL KNGQPVSTAW
ENSTTRP00000003667/1-1240 PGPPV-EWSG LDEGHARAGQ NLELLCMARR GNPL-TLQWL KNGQPVSTAW
bmy_05909T0/1-1212 PGPPVIEWPG LDEGHARAGQ NLELLCMARG GNPLATLQWL KNGQPVSTAW
BACU000611/1-1290 PGPPVIEWPG LDEGHARAGQ NLELLCMARG GNPLATLQWL KNGQPVSTAW
351 400
ENSP00000368190/1-1241 GTEHTQAVAR SVLVMTVRPE DHGAQLSCEA HNSVSAGTQE HGITLQVTFP
ENSBTAP00000010289/1-1241 GTEHAQAVAR SLLVMIVRPE DHGARLSCEA YNSVSSGIQE RGVTLQVTFP
ENSTTRP00000003667/1-1240 GTEHTQAVAR SMLVMIVRPE DHGARLSCEA YNSVSTGIQE RGVTLQVTFP
bmy_05909T0/1-1212 GTEHAQAVAR SMLVMIVRPE DHGARLSCEA YNSVSTGIQE RGVTLQVTFP
BACU000611/1-1290 GTEHAQAVAR STLVMIVRPE DHGARLSCEA YNSVSTGIQE RGVTLQVTFP
401 450
ENSP00000368190/1-1241 PSAIIILGSA SQTENKNVTL SCVSKSSRPR VLLRWWLGWR QLLPMEETVM
ENSBTAP00000010289/1-1241 PSAITILGSA SQSENKNVTL SCITKSSRPR VLLRWWLGWR QLQPSEETVM
ENSTTRP00000003667/1-1240 PSAITILGSA SQSENKNVTL SCITKSSRPR VLLRWWLGWR QLLSTEETVM
bmy_05909T0/1-1212 PGAITILGSA SQSENKNVTL SCITKSSRPR ---------- ----------
BACU000611/1-1290 PSAITILGSA SQSENKNVTL SCITKSSRPR VLLRWWLGWR QLLPTEETVM
451 500
ENSP00000368190/1-1241 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLILNVKY
ENSBTAP00000010289/1-1241 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLTLNVKY
ENSTTRP00000003667/1-1240 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLALNVKY
bmy_05909T0/1-1212 -GLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLTLNVKC
BACU000611/1-1290 DGLHGGHISM SNLTFLARRE DNGLTLTCEA FSEAFTKETF KKSLTLNVKY
501 550
ENSP00000368190/1-1241 ---------- ---------- ---------- ----PAQKLW IEGPPEGQKL
ENSBTAP00000010289/1-1241 ---------- ---------- ---------- ----PAQKLW IEGPPEGQRL
ENSTTRP00000003667/1-1240 ---------- ---------- ---------- ----PAQKLW IEGPPEGQRL
bmy_05909T0/1-1212 EAPPSPGGAP CLRDPHPQAP AGREKPLFLA LPTDPAQKLW IEGPPEGQRL
BACU000611/1-1290 ---------- ---------- ---------- ----PAQKLW IEGPPEGQRL
551 600
ENSP00000368190/1-1241 RAGTRVRLVC LAIGGNPEPS LMWYKDSRTV TESRLPQESR RVHLGSVEKS
ENSBTAP00000010289/1-1241 RAGNRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQEPR RVQLGSVEKS
ENSTTRP00000003667/1-1240 RAGTRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQETR RVQLGSLEKS
bmy_05909T0/1-1212 RAGTRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQEPR RVQLGSLEKS
BACU000611/1-1290 RAGTRVRLVC LAIGGNPDPS LTWYKDSRTV TEPRPPQEPR RVQLGSLEKS
601 650
ENSP00000368190/1-1241 GSTFSRELVL VTGPSDNQAK FTCKAGQLSA STQLAVQFPP TNVTILANAS
ENSBTAP00000010289/1-1241 GSIFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS
ENSTTRP00000003667/1-1240 GSTFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS
bmy_05909T0/1-1212 GSTFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS
BACU000611/1-1290 GSTFSRELVL ITGPSDNQAK FTCKAGQLSA STQLVVQFPP TNVTILANAS
651 700
ENSP00000368190/1-1241 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAAPPR RAPFKGSAAA
ENSBTAP00000010289/1-1241 TLRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEDVAAQPR RAPFKGSAAA
ENSTTRP00000003667/1-1240 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAATPR SAPFKGSAAA
bmy_05909T0/1-1212 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAATPR SAPFKGSAAA
BACU000611/1-1290 ALRPGDALNL TCVSVSSNPP VNLSWDKEGE RLEGVAATPR SAPFKGSAAA
701 750
ENSP00000368190/1-1241 RSVLLQVSSR DHGQRVTCRA HSAELRETVS SFYRLNVLYR PEFLGEQVLV
ENSBTAP00000010289/1-1241 RSVLLRLSSR DHGHRVTCSA HSTELRETVS AFYRLNVLYP PEFLGEQVLV
ENSTTRP00000003667/1-1240 RSVLLRMSSR DHGHRVTCRA HSTELRETVS AFYRLNVLYP PEFLGEQVLM
bmy_05909T0/1-1212 RSVLLRMSSR DHGHRVTCRA HSTELRETVS AFYRLNVLYP PEFLGEQVLV
BACU000611/1-1290 RSVLLRMSSR DHGHRVTCRA HSTELRETVS AFYRLNVLYP PEFLGEQVLV
751 800
ENSP00000368190/1-1241 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSSGALH
ENSBTAP00000010289/1-1241 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ
ENSTTRP00000003667/1-1240 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ
bmy_05909T0/1-1212 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ
BACU000611/1-1290 VTAVEQGEAL LPVSVSANPA PEAFNWTFRG YRLSPAGGPR HRILSGGALQ
801 850
ENSP00000368190/1-1241 LWNVTRADDG LYQLHCQNSE GTAEARLRLD VHYAPTIRAL QDPTEVNVGG
ENSBTAP00000010289/1-1241 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VQYAPTIRAL QDPTEVNVGD
ENSTTRP00000003667/1-1240 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VHXXXXXXXX XXXXXXXXXX
bmy_05909T0/1-1212 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VHYAPIIRAL QDPTEVNIGG
BACU000611/1-1290 LWNVTRADDG LYQLHCQNSE GTAEALVRLD VHYAPIIRAL QDPTEVNIGG
851 900
ENSP00000368190/1-1241 SVDIVCTVDA NPILPGMFNW ERLGEDEEDQ SLDDMEKISR GPTGRLRIHH
ENSBTAP00000010289/1-1241 SVDIVCTVDA NPILPEMFNW ERLGEEGEDQ NLDDMEKMSK GSTGRLRIHH
ENSTTRP00000003667/1-1240 XXXXXXXXXX XXXXXXXFNW ERLGEEEEDQ SLDDMEKISK GSTGRLRIHH
bmy_05909T0/1-1212 SVDI------ ---------- ---GEEEEDQ SLDDMEKISK GSTGRLRIHH
BACU000611/1-1290 SVDIVCTVDA NPILPEMFNW ERLGEEEEDQ SLDDMEKISK GSTGRLRIHH
901 950
ENSP00000368190/1-1241 AKLAQAGAYQ CIVDNGVAPP ARRLLRLVVR FAPQVEHPTP LTKVAAAGDS
ENSBTAP00000010289/1-1241 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPAP LTKVAAAGDS
ENSTTRP00000003667/1-1240 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPSP LTKVAAAGDS
bmy_05909T0/1-1212 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPSP LTKVAAAGDS
BACU000611/1-1290 AKLTQAGAYQ CIVDNGVAPP ARGLVRLVVR FAPHVEHPSP LTKVAAAGDS
951 1000
ENSP00000368190/1-1241 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QGGVHSSLLT
ENSBTAP00000010289/1-1241 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QGGVHSSLLT
ENSTTRP00000003667/1-1240 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QSGVHSSLLT
bmy_05909T0/1-1212 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QSGVHSSLLT
BACU000611/1-1290 TSSATLHCRA RGVPNIVFTW TKNGVPLDLQ DPRYTEHTYH QSGVHSSLLT
1001 1050
ENSP00000368190/1-1241 IANVSAAQDY ALFTCTATNA LGSDQTNIQL VSIS------ RPDPPSGLKV
ENSBTAP00000010289/1-1241 IANVSAAQDY ALFTCIATNP LGSDHTNIQL VSIS------ RPDPPSGLKA
ENSTTRP00000003667/1-1240 IANVSAAQDY ALFTCTATNP LGSDHTDIQL VSIS------ RPDPPLGLKV
bmy_05909T0/1-1212 IANVSAAQDY ALFTCTATNP LGSDHTDIQL VSIS------ RPDPPLGLKV
BACU000611/1-1290 IANVSAAQDY ALFTCTATNP LGSDHTDIQL VSISMVGGGC RPDPPLGLKV
1051 1100
ENSP00000368190/1-1241 VSLTPHSVGL EWKPGFDGGL PQRFCIRYEA LGTPGFHYVD VVPPQATTFT
ENSBTAP00000010289/1-1241 VSMTPYSVGL EWKPGFDGGL PQRFQIRYEA LETPGFLYMD VLPPQATTFT
ENSTTRP00000003667/1-1240 VSMTPYSVGL EWKPGFDGGL PQSFQVRYEA LGTPGFLYVN VLPPQATAFT
bmy_05909T0/1-1212 VSMTPYSVGL EWKPGFDGGL PQSFQVRYEA LGTLGFLYMN VLPPQATTFT
BACU000611/1-1290 VSMTPYSVGL EWKPGFDGGL PQSFQIRYEA LGTPGFLYMN VLPPQATTFT
1101 1150
ENSP00000368190/1-1241 LTGLQPSTRY RVWLLASNAL GDSGLADKGT QLPITTPGLH QPSGEPEDQL
ENSBTAP00000010289/1-1241 LTGLQPSTRY RVWLLASNAL GDSGLADKVS QISITTPGLD QPSREPDYQL
ENSTTRP00000003667/1-1240 LTGLQPSTRY RVWLLASNAL GDSGIADKGS QISVTTPGLD QPSGEPDYQL
bmy_05909T0/1-1212 LTGLQPSTRY RVWLLASNAL GDSGLADKGS QISVTTPGLD QPSGEPDYQL
BACU000611/1-1290 LTGLQPSTRY RLWLLASNAL GDSGLADKGS QISVTTP--- ----------
1151 1200
ENSP00000368190/1-1241 PTEPPS---- ---------- ---------- ---------G PSGLPLLPVL
ENSBTAP00000010289/1-1241 PTEQPA---- ---------- ---------- ---------G PSEMPLLPVL
ENSTTRP00000003667/1-1240 PTEQPA---- ---------- ---------- ---------G PSKLPLLPVL
bmy_05909T0/1-1212 PTEQPAGKSS IPKHPLSPGK NFLVSNPTSS SFLKPVVPTG PSKLPLLPVL
BACU000611/1-1290 ---------- ---------- ---------- ---------G PSKLPLLPVL
1201 1250
ENSP00000368190/1-1241 FALGGLLLLS NASCVGGVLW QRRLRRLAEG ISEKTEAG-- ----------
ENSBTAP00000010289/1-1241 LAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTETG-- ----------
ENSTTRP00000003667/1-1240 FAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTEAG-- ----------
bmy_05909T0/1-1212 FAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTEAGKT LGRRIEGDGC
BACU000611/1-1290 FAVGGLLLLS NASCVGGFLW QRRLKRLAEG ISEKTEAG-- ----------
1251 1300
ENSP00000368190/1-1241 ---------- -----SEEDR VRNEYEESQW TGERDTQSST VSTTEAEPYY
ENSBTAP00000010289/1-1241 ---------- -----SEEDR VRNEYEESQW TGDRDTRSST VSTTDVEPYY
ENSTTRP00000003667/1-1240 ---------- -----SEEDR VRNEYEESQW TGDRDTRSSM VSTTDVEPYY
bmy_05909T0/1-1212 QRVNIQLPPC LHPGRSEEDR VKNEYEESQW TGDHDTRSSM VSTTDVEPYY
BACU000611/1-1290 ---------- -----SEEDR VRNEYEESQW TGDRDTRSSM VSTTDVEPYY
1301 1350
ENSP00000368190/1-1241 RSLRDFSPQL PPTQEEVSYS RGFTG-EDED MAFPGHLYDE VERTYPPSGA
ENSBTAP00000010289/1-1241 HSMRDFSPQL PPTMEEVSYP LG-EALEEEN MAFPGHLYDE VERVYAPSRA
ENSTTRP00000003667/1-1240 HSMRDFSPQL PPMLEEVSYP RGVTGLKEEN MAFPGHVYDE LERLYAPSGA
bmy_05909T0/1-1212 HSMRDFSPQL PPTLEEVSYP RGLTGLEEEN MTFPGHVYDE VERLYAPSGA
BACU000611/1-1290 HSMRDFSPQL PPTLEEVSYP RGLTGLEEEN MTFPGHVYDE VERLYAPSGA
1351 1400
ENSP00000368190/1-1241 WGPLYDEVQM GPWDLHWPED TYQDPRGIYD QVAGDLDTLE PDSLPFELRG
ENSBTAP00000010289/1-1241 WGPLYDEVQM DSCDFRWPGD RYEDARGIYD QVAGDLDPVE PDAIPFELRG
ENSTTRP00000003667/1-1240 WGPLYDEVPM GSCDLYWPED RYEDARGIYD QVAGDLDPME PDALPFELRG
bmy_05909T0/1-1212 WGPLYDEVPM ---------- ---------- ---------- ----------
BACU000611/1-1290 WGPLYDEVPM GSCDLYWPED RYEDARGIYD QVAGDLDPME PDVLPFEMRG
1401 1450
ENSP00000368190/1-1241 HLV
ENSBTAP00000010289/1-1241 HLV
ENSTTRP00000003667/1-1240 QLV
bmy_05909T0/1-1212 ---
BACU000611/1-1290 QLV