KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:37 2014 Check: 00 .. Name: ENSP00000353331/1-708 Len: 711 Check: 5253 Weight: 1.00 Name: ENSBTAP00000010297/1-707 Len: 711 Check: 6206 Weight: 1.00 Name: ENSTTRP00000003673/1-705 Len: 711 Check: 1685 Weight: 1.00 Name: bmy_05910T0/1-633 Len: 711 Check: 9625 Weight: 1.00 Name: BACU000612/1-707 Len: 711 Check: 2682 Weight: 1.00 // 1 50 ENSP00000353331/1-708 MLRMRVPALL VLLFCFRGRA GPSPHFLQQP EDLVVLLGEE ARLPCALGAY ENSBTAP00000010297/1-707 TLRMLVPVLL VLSFCLRGRA GLAPHFLQQP EDQVVLLGDE ARLPCALGDY ENSTTRP00000003673/1-705 TLRMLVPALL VLLFCLRGRA GLSPHFLQQP EDLVVLLGDE ARLPCALGAY bmy_05910T0/1-633 SALLLRPILL ---------- GLSPHFLQQP EDLVVLLGDE ARLPCALGAY BACU000612/1-707 ---MLVPALL VLFFCLRGRA GLSPHFLQQP EDLVVVLGDE ARLPCALGAY 51 100 ENSP00000353331/1-708 WGLVQWTKSG LALGGQRDLP GWSRYWISGN AANGQHDLHI RPVELEDEAS ENSBTAP00000010297/1-707 RGLVQWTKDG LALGGERDLP GWSRYWISGN AASGQHDLHI RPVELEDQAS ENSTTRP00000003673/1-705 WGLVQWTKDG LAIGGERDLP GWSRYWISGN AASGQHDLHI RPVEIEDQAS bmy_05910T0/1-633 WGLVQWTKDG LALGGERDLP GWSRYWISGN AASGQHDLHI RPIELEDQAS BACU000612/1-707 WGLVQWTKDG LALGGERDLP GWSRYWISGN AASGQHDLHI RPVELEDQAS 101 150 ENSP00000353331/1-708 YECQATQAGL RSRPAQLHVL VPPEAPQVLG GPSVSLVAGV PANLTCRSRG ENSBTAP00000010297/1-707 YECQATQAGL RSRPAQLHVL VPPDPPQVLG GPSVSLVAGV PANLTCRSRG ENSTTRP00000003673/1-705 YECQATQAGL RSRRAQLHVL VPPEPPQVLG GPFVSLVAGV PANVTCRSRG bmy_05910T0/1-633 YECQATEAGL RSRRAQLHVL VPPEPPQVLG GPSVSLVAGV PANVTCRSRG BACU000612/1-707 YECQATQAGL RSRRAQLHVL VPPEPPQVLG GPSVSLVAGV PANVTCRSRG 151 200 ENSP00000353331/1-708 DARPTPELLW FRDGVLLDGA TFHQTLLKEG TPGSVESTLT LTPFSHDDGA ENSBTAP00000010297/1-707 DAHPTPELLW FRDGIRLDGA IFRQTPLKEG TIGSVESILS LTPSSHDDGA ENSTTRP00000003673/1-705 DARPTPELLW FRDGVRLDGA TFRQTLLKEG TTGSVESILS LTPSSHDDGA bmy_05910T0/1-633 DARPTPELLW FRDGVRLDGA TFRQ------ ---------- ---------- BACU000612/1-707 DARPTPELLW FRDGVRLDGA TFRQTLLKEG ATGSVESILS LTPSSHDDGA 201 250 ENSP00000353331/1-708 TFVCRARSQA LPTGRDTAIT LSLQYPPEVT LSASPHTVQE GEKVIFLCQA ENSBTAP00000010297/1-707 TLVCRARSQA LPAGKDTAVT LSLQYPPVVT LSAEPQTVQE GEKVTFLCQA ENSTTRP00000003673/1-705 ILVCRARSQA LPAGKDTAIT VSLQYPPVVT LSAEPQTVQE GEKT-FLCQ- bmy_05910T0/1-633 ---------- ---------- ---------- ------TVQE GEKVTFLCQA BACU000612/1-707 ILVCRARSQA LPTGKDTAIT LSLQYPPVVT LSAEPQTVQE GEKVTFLCQA 251 300 ENSP00000353331/1-708 TAQPPVTGYR WAKGGSPVLG ARGPRLEVVA DASFLTEPVS CEVSNAVGSA ENSBTAP00000010297/1-707 TAQPPVTGYR WAKGGSPVLG ARGPMLEIVA DASFLTAPVS CEVSNAVGSA ENSTTRP00000003673/1-705 TAQPPVTGYR WAKGGSPVLG ARGPMLEVVA DASFLTAPVS CEVSNAVGSA bmy_05910T0/1-633 TAQPPVTGYR WAKGGSPVLG ARGPMLEVVA DASFLTAPVS CEVSNAVGSA BACU000612/1-707 TAQPPVTGYR WAKGGSPVLG ARGPMLEVVA EASFLTAPVS CEVSNAVGSA 301 350 ENSP00000353331/1-708 NRSTALDVLF GPILQAKPEP VSVDVGEDAS FSCAWRGNPL PRVTWTRRGG ENSBTAP00000010297/1-707 NRSTALDVQF GPILQAKPKA LSVDVGEDAS FSCVWRGNPL PRVTWTRRGD ENSTTRP00000003673/1-705 NRSTALDVRF GPILQAKPKP LSVDVWEDAS FSCVWRGNPL PRVTWTRRGD bmy_05910T0/1-633 NRSTALDVRF GPILQAKPKP LSVDVGEDAS FSCVWRGNPL PRVTWTRRGD BACU000612/1-707 NRSTALDVRF GPILQAKPKP LSVDVGEDAS FSCVWRGNPL PRVTWTRRGD 351 400 ENSP00000353331/1-708 AQVLGSGATL RLPSVGPEDA GDYVCRAEAG LSGLRGGAAE ARLTVNAPPV ENSBTAP00000010297/1-707 AQVLASGPTL RLPAVGPEDA GDYVCRAEPG LSGRGGGSAE ARLTVNAPPV ENSTTRP00000003673/1-705 AHVXXXXXXX XXXXXXXXXX XDYVCRAGPG LSGLRGGAAE ARLTVNAPPV bmy_05910T0/1-633 AQVLASGPTL RLLAVGPEDA GDYVCRAEPG LSGLGGGSAE ARLTVNAPPV BACU000612/1-707 AQVLASGPTL RLLAVGPEDA GDYVCRAEPG LSSLGGGAAE ARLTVNAPPV 401 450 ENSP00000353331/1-708 VTALHSAPAF LRGPARLQCL VFASPAPDAV VWSWDEGFLE AGSQGRFLVE ENSBTAP00000010297/1-707 VTALHSAPAF LRGPARLQCL VFASPTPEAV VWSWDEGFLT AGSRGRFLVE ENSTTRP00000003673/1-705 VTALHSAPAF LRGPARLQCL VFASPAPEAV VWSWDEGFLT AGSRGRFLVE bmy_05910T0/1-633 VTALHSAPAF LRGPARLQCL VFASPAPEAV VWSWDEGFLT AGSRGRFLVE BACU000612/1-707 VTALHSAPAF LRGPARLQCL VFASPAPEAV VWSWDEGFLT AGSRGRFLVE 451 500 ENSP00000353331/1-708 TFPAPESRGG LGPGLISVLH ISGTQESDFS RSFNCSARNR LGEGGAQASL ENSBTAP00000010297/1-707 TFPAPEGLKG QGPGLISVLH ISGTQESDFH RGFNCTARNR LGEGGTQVSL ENSTTRP00000003673/1-705 TFPAPEGRGG QGPGLISVLH ISGTQESDFS RGFNCTARNR LGEGGTQVSL bmy_05910T0/1-633 TFPAPEGRGG QGPGLISVLH ISGTQESDFS RGFNCTARNR LGEGGTQVSL BACU000612/1-707 TFPAPEGRGG QGPGLISVLH ISGTQESDFS RAFNCTARNR LGEGGTQVSL 501 550 ENSP00000353331/1-708 GRRDLLPTVR IVAGVAAATT TLLMVITGVA LCCWRHSK-- -ASASFSEQK ENSBTAP00000010297/1-707 GRRDLLPTVR IVAGVAAMAM TLLMIITGVA LCCWRHGR-- -ASASFSKQK ENSTTRP00000003673/1-705 GRRDLLPAVR IVAGVAAVAM TLLMAGTGVA LCCWCHGK-- -ASASFSKQK bmy_05910T0/1-633 GRRDLLPTVR IVAGVAAVAM TLLMVITGVA LCCWRHGK-- ---ASFSKQK BACU000612/1-707 GRRDLLPTVR IVAGVAAVAM TLLMVITGVA LCCWRHGKVS LASASFSKQK 551 600 ENSP00000353331/1-708 NLMRIPGSSD GSSSRGPEEE ETGSREDRGP IVHTDHSDLV LEEKGTLETK ENSBTAP00000010297/1-707 NLVRIPGSSD GSSSRGP-EE ETGISKDQGP IVHTDHSDLV LDEEGALETK ENSTTRP00000003673/1-705 NLVRIPGSSN GSSSRGP-EE ETGSSKDQGP IVHTDHSDLA LDEEGALETK bmy_05910T0/1-633 NLVRIPGSSN GSSSRGP-EE ETGSSKDQGP IMHTDHSDLA LDEEGAVETK BACU000612/1-707 NLVRIPGSSN GSSSRGP-EE ETGSSKDQGP IAHTDHSDLA LDEEGALETK 601 650 ENSP00000353331/1-708 DPTNGYYKVR GVSVSLSLGE APGGGLFLPP PSPLGPPGTP TFYDFNPHLG ENSBTAP00000010297/1-707 DPTNGYYKVR GVSVSLSLGE APGGGLFLPP SSPLGPPGTP TFYDFNPHLG ENSTTRP00000003673/1-705 DPTNGYYKVR GVSVSLSLGE APGGGLFLPP SSPLGPPGTP TFYDFKTHVG bmy_05910T0/1-633 DPTNGYYKVR GVSVSLSLGE APGGGLFLPP SSPFGPPGTP TFYDFKPHLG BACU000612/1-707 DPTNGYYKVR GVSVSLSLGE APGGGLFLPP SSPFGPPGTP TFYDFKPHLG 651 700 ENSP00000353331/1-708 MVPPCRLYRA RAGYLTTPHP RAFTSYIKPT SFGPPDLAPG TPPFPYAAFP ENSBTAP00000010297/1-707 MVPPCRLYRS RAGYLTTPHP RAFTSYIKPT SFGPPDLAPS TPPFPYAAFP ENSTTRP00000003673/1-705 IVPPCRLYRA KAGYLTTPHP RAFTSYIKPT SFGPPDLAPS TPPFPYAAFP bmy_05910T0/1-633 IVPPCRLYRA QAGYLTTPHP RAFTSYIKPT SFGPPDLAPS TPPFPYAAFP BACU000612/1-707 IVPPCRLYRA QAGYLTTPHP RAFTSYIKPT SFGPPDLAPS TPPFPYAAFP 701 750 ENSP00000353331/1-708 TPSHPRLQTH V ENSBTAP00000010297/1-707 TPSHPRLQTH V ENSTTRP00000003673/1-705 APSHPRLQTH V bmy_05910T0/1-633 TPSHPRLQTH V BACU000612/1-707 TPSHPRLQTH V