KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:38 2014 Check: 00 .. Name: ENSTTRP00000016561/1-757 Len: 788 Check: 1457 Weight: 1.00 Name: bmy_01660T0/1-765 Len: 788 Check: 7271 Weight: 1.00 Name: BACU012652/1-547 Len: 788 Check: 1918 Weight: 1.00 Name: ENSP00000417003/1-761 Len: 788 Check: 6172 Weight: 1.00 Name: ENSBTAP00000010299/1-624 Len: 788 Check: 99 Weight: 1.00 // 1 50 ENSTTRP00000016561/1-757 MEALEVDDIS PALEVTEDFF TTFDSKLEKA VQQAEVYGIQ EVPELVGHEV bmy_01660T0/1-765 MEALEVDDIS PALEVTEDFF STFDSKLEKA VQQAEVYGIQ EVPELVGHEV BACU012652/1-547 MEALEVDDIS PALEVTEDFF STFDSKLEKA VQQAEVYGIQ EVPELVGHEV ENSP00000417003/1-761 MEALEVDDIS PALEVTEEFF STLDSNLEKA VQQAEVYGIQ EVPELVGHEV ENSBTAP00000010299/1-624 MEALEVDDIS PALEVTEDFF NTFDNKLEKA VQQAEVYGIQ EVPELVGREV 51 100 ENSTTRP00000016561/1-757 LSNI-DNGAI RNVSSLGKGG MIWDHCKTRF LETKAQNVFP AKEQFMVQKG bmy_01660T0/1-765 LSNI-DNGAI RNVSSLGKGG MIWDHCKTRF LETKAQNVFP AKEQFMVQKG BACU012652/1-547 LSNI-DNGAI RNVSSLGEGG MIWEHCKTRF LETKAQNVFP AKEQFMVQKG ENSP00000417003/1-761 LSNITDNGAM RNVTSLGKGG MIWDHCKSRL LETKAQNVFP AKEQFMVQRG ENSBTAP00000010299/1-624 LGNI-DNGAI RNVTSLGQGG VIWDHCKTRL LDTKVPNVFP AKEQFMVQKG 101 150 ENSTTRP00000016561/1-757 TTPDNLSWME QKEASTFDFF NICQRRRDRP RSVNDLLDET STFKPGHARS bmy_01660T0/1-765 TTPDNLSWME QKEASTFEFF NICQRRKDRP RSVNDLLDET STFKPGHARS BACU012652/1-547 TTPDNLSWME QKEASTFEFF NICQRRRDRP RSVNDLLDEA STFKPGHARS ENSP00000417003/1-761 TTPDNLSWME QKEASTFNFF NICQRRRDRP RSVNDLLDET STFKPGHARS ENSBTAP00000010299/1-624 TTPDNLSWME QKEASTFNFF NICQRRRDRP RSVNDLLDET STFKPGHARS 151 200 ENSTTRP00000016561/1-757 RSDISQVDWR VVLKTMPLQQ QQQ--PSLQG PHFTRTSFLL SSSNKVEDAQ bmy_01660T0/1-765 RSDVTQVDWR VVLKTTPLQQ QQQ--PPLQG PHFTRPSFLL SSSDKVEDAQ BACU012652/1-547 RSDVTQVDWR VVLKTTPLQQ QQQ--PPLQG PHFTRPSFLL SSSDKVEDAQ ENSP00000417003/1-761 RSDITQVDWR VVLKTTPLQQ QQQQQPLLQG PHVTRPSFLL PSPNKIEDAQ ENSBTAP00000010299/1-624 RSDITQVDWR VVLKTMPLQQ E----VSLQG PHFARPSLLL SSSNKVEDAQ 201 250 ENSTTRP00000016561/1-757 GNMXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01660T0/1-765 GNMEHKQAFP NILKKGYLEI RKDHDSYWQS CYAELSPYSL YFYSLDSSGN BACU012652/1-547 GNMEHKQAFP NILKKGYLEI RKDHDSYWQS CYAELSPYSL YFYSLDRSGN ENSP00000417003/1-761 GNTEHKQTFP NILKKGYLEI RKDHDSYWQS CYAELSPYNL YFYSLDSSGN ENSBTAP00000010299/1-624 GNTEHKPAFP NILKKGYLEI RKEHDSYWQS CYAELSPYSL YFYSLDSSGN 251 300 ENSTTRP00000016561/1-757 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01660T0/1-765 QNLYATYQLS HFQSISVLGN LEARLVDTVL YDNTQLQLKA ESPWEALDWG BACU012652/1-547 QNLYATYQLS HFQSISVLGN LEARLVDTVL YDNTQLQLKA ESPWEALDWG ENSP00000417003/1-761 QNLYATYQLS HFQSISVLGN LEARMVDTVL YDNTQLQLKA ESPWEALDWG ENSBTAP00000010299/1-624 QNLYATYQLS HFQSISVLGN LEARLVDTVL YDNTQLQLKA ESPWEALDWG 301 350 ENSTTRP00000016561/1-757 XXXXXXXXXX XXXXXXXXXX XXXXXXXGHH ADCPQNRCLQ KKSSELLVPS bmy_01660T0/1-765 QKLWEGVQAA APAYVGRPGE LADSPGLGHH VDCAQNRCLQ KKSSKLLVPS BACU012652/1-547 QKLWEGVHAA APAYGGRPGE LADSPGLGHH VDCAQNCCLQ KKSSELLVPS ENSP00000417003/1-761 QKLWEVVHAA VPGYMGRQNE LTISPGLGHH DDYTQNHSFQ KKTSGLLPPS ENSBTAP00000010299/1-624 QKLWEGVHAA APAYMGRPGE LANSPGLGHH VDCPQNHCLQ KKSRELLMPS 351 400 ENSTTRP00000016561/1-757 PVLDSPKEYQ NILKSGTLYR LTIQNNWKAF TFVVSPAY-M AFQPGKLDED bmy_01660T0/1-765 PVLDSPKEYQ NILKSGTLYR LTIQNNWKAF TFVLSRAYLM AFQPGKLDED BACU012652/1-547 PVLDSPKEYQ NILKSGTLYR LTIQNNWKAF TFVLSRAYLM AFQPGKLDED ENSP00000417003/1-761 PVLDSSKQYQ NILKSGTLYR LTVQNNWKAF TFVLSRAYLM AFQPGKLDED ENSBTAP00000010299/1-624 PVLDSPKQYQ NILKSGTLYR LTMQNNWKAF TFVLSRTCLM AFPPGKLDED 401 450 ENSTTRP00000016561/1-757 PLLSYNVDVC LAVQMDNLDD CDSCFQVIFP QDVLRLRAET RQRAQEWMEA bmy_01660T0/1-765 PLLSYNVDVC LAVQMDTLDD CDSCFQVIFP QDVLRLRAET RQRAQEWMEA BACU012652/1-547 PLLSYNVDVC LAVQMDTLDD CDSCFQVIFP QDVLRLRAET RQRAQEWMEA ENSP00000417003/1-761 PLLSYNVDVC LAVQMDNLDG CDSCFQVIFP QDVLRLRAET RQRAQEWMEA ENSBTAP00000010299/1-624 PLLSYNVDVC LAVQLDHLDD CDSCFQVIFP QDVLRLRAET RQRAQEWMEA 451 500 ENSTTRP00000016561/1-757 LKTAANAARS SEQNLQVTLR TKPKDQMGGH ELRKNKRQSV TTSFLSILTT bmy_01660T0/1-765 LKTAANAARS SEQNLQVTLR TKPKDQMGGH ELRKNKRQSV TTSFLSILTT BACU012652/1-547 LKTAANAARS SEQNLQVTLR TKAKDQMGGH ELRKNKRQSV TTSFLSILTT ENSP00000417003/1-761 LKIAANVARS SEQNLQVTLR NKPKDQMGGH ELRKNKRQSV TTSFLSILTT ENSBTAP00000010299/1-624 LKTAANTARS SEQNLQVTLR TKPRDQMGGH ELRKNKRQSV TTSFLSILTT 501 550 ENSTTRP00000016561/1-757 LSLERGLTAQ SFKCAGCQRS IGLSNGKAKV CNYSGWYYCS SCHVDDSFLI bmy_01660T0/1-765 LSLERGLTAQ SFKCADSEHA LLQNNDQSSL ATNSSQSSMQ DEQLRDSFQG BACU012652/1-547 LSLERGLTAQ SFKCAGPER- ---------- ---------- ----RERILT ENSP00000417003/1-761 LSLERGLTAQ SFKCAGCQRS IGLSNGKAKV CNYSGWYYCS SCHVDDSFLI ENSBTAP00000010299/1-624 LSLERGLTAQ SFKCAGCQRS IGLSNGKAKV CSYSGWYYCS SCHVDDSFLI 551 600 ENSTTRP00000016561/1-757 PARIVHNWDT SKYKVSKQAK EFLEYVYEEP LIDIQQENPM LYGHAEPLAT bmy_01660T0/1-765 QAAQSDVWND GSRSGPSQN- --FEAESIPD VVDMEEGTG- -FYPSEPMLC BACU012652/1-547 VAR------- ---------- ---------P HLEISVMDA- ---------- ENSP00000417003/1-761 PARIVHNWDT SKYKVSKQAK EFLEYVYEEP LIDIQQENAM LYHHAEPLAA ENSBTAP00000010299/1-624 PARIVHNWDT SKYKVSKQAK EFLEYVYEEP LIDIQQQNPM LYGHAEPLAT 601 650 ENSTTRP00000016561/1-757 VVRLRQRLKS LRAYLFSCRA AVAEDLRRRI FPREYLLQQI HLYSLADLQQ bmy_01660T0/1-765 SESVEGQVPH SLETLYQSAD CSN------- -PSDALIVSI HLL------- BACU012652/1-547 --ALEERTTT SIDT------ ---------- ---------- ---------- ENSP00000417003/1-761 VLRLRQRLKS LRAYLFSCRA AVAEDLRRRI FPREYLLQQI HLYSLADLQQ ENSBTAP00000010299/1-624 VVRLRQRLKS LRAYLFSCRA AVAEDLRRR- ---------- ---------- 651 700 ENSTTRP00000016561/1-757 VIEGKLAPFL GKVIKFAASH VYSCSLCSQK GFICEICNNG EILYPFEDIS bmy_01660T0/1-765 VLESGYIPQG TEAKAVSMLE TWRSGGVYKL QYTHPLCEGG SAAVSCVPLG BACU012652/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000417003/1-761 VIEGKLAPFL GKVIKFATSH VYSCSLCSQK GFICEICNNG EILYPFEDIS ENSBTAP00000010299/1-624 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000016561/1-757 TSRCESCGAV FHSE------ ---------C KEKSVPCPRC VRRELQMKQK bmy_01660T0/1-765 NLIVINATLK INNEIRSVKR LQLLPESFIC KQESGENVAK SYKDLQKLSR BACU012652/1-547 ---------- ---------- ---------- ---------- ---------- ENSP00000417003/1-761 TSRCESCGAV FHSE------ ---------C KEKSVPCPRC VRRELQKKQK ENSBTAP00000010299/1-624 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000016561/1-757 SF-------- ----WRRLNM DESLEEACNM FELSYQNT bmy_01660T0/1-765 LFKDQLVYPL LAFTRQALNL PDVFGLVVLP LELKLRIF BACU012652/1-547 ---------- ---------- ---------- -------- ENSP00000417003/1-761 SF-------- ----WQRLNM DESLEEACTM FELSYQNT ENSBTAP00000010299/1-624 ---------- ---------- ---------- --------