KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:39 2014 Check: 00 .. Name: ENSP00000292539/1-528 Len: 721 Check: 3477 Weight: 1.00 Name: ENSBTAP00000010306/1-515 Len: 721 Check: 897 Weight: 1.00 Name: ENSTTRP00000009395/1-525 Len: 721 Check: 8505 Weight: 1.00 Name: bmy_07554T0/1-717 Len: 721 Check: 1653 Weight: 1.00 Name: BACU011402/1-403 Len: 721 Check: 8580 Weight: 1.00 // 1 50 ENSP00000292539/1-528 MAEHLELLAE MPMVGRMSTQ ERLKHAQKRR AQQVKMWAQA EKEAQGKKGP ENSBTAP00000010306/1-515 MAEHLELLAE MPVVSRMSTQ ERLKHAQKRR AQQVKMWARA EKEAQGRR-- ENSTTRP00000009395/1-525 MAEHLELLAE MPTVGRMSTQ ERLKHAQKRR AQQVKMWAQA EKEAHGRRGQ bmy_07554T0/1-717 MAEHLELLAE MPVVGRMSTQ ERLKHAQKRR AQQVKMWAQA EKEAHGRRGR BACU011402/1-403 MAEHLELLAE MPMVGRMSTQ ERLKHAQKRR AQQVKMWAQA EKEAHGRRGP 51 100 ENSP00000292539/1-528 GERPRKEAAS QGLLKQVLFP PS-------- ---------- ---------- ENSBTAP00000010306/1-515 --------AS SRPQKRVLFP PS-------- ---------- ---------- ENSTTRP00000009395/1-525 RTQSQKEAAD GRPQKRVLFP PS-------- ---------- ---------- bmy_07554T0/1-717 RKQSQEAAAG GWPQKRVLFT PSRERKWGRL GEAWELTQGW LTEGASTQAQ BACU011402/1-403 RKQSQKEAAG GWPQKRVLFT PS-------- ---------- ---------- 101 150 ENSP00000292539/1-528 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010306/1-515 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009395/1-525 ---------- ---------- ---------- ---------- ---------- bmy_07554T0/1-717 GATVEVAVTQ EGPSAMTQEG ALLEGRGRVL LSVPCLGAQL LSPRPELWCP BACU011402/1-403 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000292539/1-528 ---------- ---------- ---------- -------VVL LEAAARNDLE ENSBTAP00000010306/1-515 ---------- ---------- ---------- -------VTL LEAAARNDLE ENSTTRP00000009395/1-525 ---------- ---------- ---------- -------VAL LEAAARNDLE bmy_07554T0/1-717 SCHLYHCLSP RPLLSRLRTA VSPGIPGAGT RAGWRWPVAG LLCPERTPLL BACU011402/1-403 ---------- ---------- ---------- -------VAL LDAAARNDLE 201 250 ENSP00000292539/1-528 E--VRQFLGS GVSPDLANED GLTALHQCCI DDFREMVQQL LEAGANINAC ENSBTAP00000010306/1-515 E--VRQFLES GVSPDLANED GLTALHQSCI DDFREMVQQL LEAGARVNAR ENSTTRP00000009395/1-525 E--VRQFLES GVSPDLANED GLTALHQSCI DDFREMVQQL LEAGAKVNAR bmy_07554T0/1-717 SA-VRQFLES GVSPDLANED GLTALHQSCI DDFREMVQQL LEAGAKVNAR BACU011402/1-403 EGEFRQFLES GVSPDLANED GLTALHQSCI DDFREMVQQL LEAGAKVNAR 251 300 ENSP00000292539/1-528 DSECWTPLHA AATCGHLHLV ELLIAS---- ---------- ---------- ENSBTAP00000010306/1-515 DSECWTPLHA AATCGHLRLV ELLIAR---- ---------- ---------- ENSTTRP00000009395/1-525 DSECWTPLHA AATCGHLHLV ELLIAG---- ---------- ---------- bmy_07554T0/1-717 DSECWTPLHA AATCGHLHLV ELLIARSSQR SPDTQALSPP PSAAWGPQSL BACU011402/1-403 DSECWTPLHA AATCGHLHLV ELLIAR---- ---------- ---------- 301 350 ENSP00000292539/1-528 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010306/1-515 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009395/1-525 ---------- ---------- ---------- ---------- ---------- bmy_07554T0/1-717 GTPSWQVGPL YVFMGAEGCQ EPEKSDMVET AGQPTWPQDS IQGRGAASHC BACU011402/1-403 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000292539/1-528 --GANLLAVN TDGNMPYDLC DDEQTLDCLE TAMADRGITQ DSIEAARAVP ENSBTAP00000010306/1-515 --GADLLAVN TDGNMPYDLC EDEQTLDCLE TAMASRGITQ DSIEQARALP ENSTTRP00000009395/1-525 --GADLLAVN TDGNMPYDLC EDEQTLDCLE TAMASRGITQ DSIERARALP bmy_07554T0/1-717 SSGADLLAVN TDGNMPYDLC DDEQTLDCLE TAMASRGITQ DSIEQARALP BACU011402/1-403 --GADLLAVN TDGNMPYDLC EDEQTLDCLE TAMASRGITQ DSIERARALP 401 450 ENSP00000292539/1-528 ELRMLDDIRS RLQAGADLHA PLDHGATLLH VAAANGFSEA AALLLEHRAS ENSBTAP00000010306/1-515 ELHMLEDIRN LLQAGANLDA PRDHGATLLH IAAANGFSEA AALLLEHQAS ENSTTRP00000009395/1-525 ELHMLEDIRS LLQEGADLNA PRDHGATLLH IAAASGFGEA AALLLEHGAS bmy_07554T0/1-717 ELHMLEDVRS LLQAGADLNA PRDHGATLLH IAAANGFGEA AALLLEHRAS BACU011402/1-403 ELHMLEDVRS LLQAGADLNA PRDHGATLLH IAAANGFGEA AALLLAHRAS 451 500 ENSP00000292539/1-528 LSAKDQDGWE PLHAAAYWGQ VPLVELLVAH GADLNAKSLM DETPLDVCGD ENSBTAP00000010306/1-515 LSAKDRDGWE PLHAAAYWGQ VRLVELLVAH GADLNGKSLM DETPLDVCGD ENSTTRP00000009395/1-525 LSTKDRDGWE PLHAAAYWGQ VPLVELLVAH GADLNGKSLM EETPLDVCGD bmy_07554T0/1-717 LSTKDRDGWE PLHAAAYWGQ VHLVELLVAH GADLNGKSLM DETPLDVCGD BACU011402/1-403 LSTKDRDGWE PLHAAAYWGQ ---------- ---------- ---------- 501 550 ENSP00000292539/1-528 EEVRAKLLEL KHKHDALLRA QSRQRSLLRR RTSSAGSRGK VVRRVSLTQR ENSBTAP00000010306/1-515 EEVRAKLLEL KHKHDALLRA QGRQRSLLRR RTSSAGSRGK VVRRVSLIQR ENSTTRP00000009395/1-525 EEVRAKLLEL KHKHDALLRA QGRQRSLLRR RTSSAGSRGK VVRRVSLTQR bmy_07554T0/1-717 EEVRAKLLEL KHKHDALLRA QGRQRSLLRR RTSSAGSRGK VVRRVSLTQR BACU011402/1-403 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000292539/1-528 TDLYRKQHAQ EAIVWQQPPP TSPEPPEDND DRQTGAELRP PPPEEDNPEV ENSBTAP00000010306/1-515 TSLYRREHAQ EAIVWQQPPP ASPEPSEEDE DRQTDAELQP PPLEEEDPEE ENSTTRP00000009395/1-525 TSLYRKEHAQ EAIVWQQPPP TSPEPSEEDE DRQTDAELRR PPPEEEDPEA bmy_07554T0/1-717 TSLYRKEHAR EAIVWQQPPP TSPEPSEEDE DRQTDAELRR PPPEEEDPEA BACU011402/1-403 ---------- ---------- ---------- ---------- ----EEDPEA 601 650 ENSP00000292539/1-528 VRPHNGRVGG SPVRHLYSKR LDRSVSYQLS PLDSTTPHTL VHDKAHHTLA ENSBTAP00000010306/1-515 ARPHNGRVGG APARHLYSKR LDRSVSYQLS PLESASPDAL VRAKAHHTLA ENSTTRP00000009395/1-525 ARQHNGRVGA PPGRHLYSKR LDRSVSYQLS SLENTTPDAL VQAKAPHTLA bmy_07554T0/1-717 ARQHNGRVGS PPGRHLYSKR LDRSVSYQLS PLESTTPDAL VQAKAPHTLA BACU011402/1-403 ARQHNGRVGS PPGRHLYSKR LDRSVSYQLS PVESTTPDAL VQAKTPHTLA 651 700 ENSP00000292539/1-528 DLKRQRAAAK LQRPPPEGPE SPETAEPGLP GDTVTPQPDC GFRAGGDPPL ENSBTAP00000010306/1-515 DLKRQRAAAK LQRPPAEGPE A---AEAGLP VDTETPQPES GCGASGDPPL ENSTTRP00000009395/1-525 ELKRQRAAAK LQRPPPEGLE A---AESELP VDTETPQLEC GSGAGGDPPL bmy_07554T0/1-717 ELKRQRAAAK LQRPPPEGLE A---AESELP VDTETPQLEC GSGAGGDPPL BACU011402/1-403 ELKRQRAAAK LQRPPPEGLE A---AESELP VDTETPQLEC GPGAGGDPPL 701 750 ENSP00000292539/1-528 LKLTAPAVEA PVERRPCCLL M ENSBTAP00000010306/1-515 LKLTAPSEEA PVEKRPCCLL M ENSTTRP00000009395/1-525 LRLTAPAEAA RGEKRPCCLL M bmy_07554T0/1-717 LKLTAPSEEA RVEKRPCCLL M BACU011402/1-403 LKLTAPSEEA RVEKRPCCLL M