KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:42 2014 Check: 00 .. Name: ENSP00000411010/1-756 Len: 1008 Check: 898 Weight: 1.00 Name: ENSBTAP00000010317/1-766 Len: 1008 Check: 5708 Weight: 1.00 Name: ENSTTRP00000003958/1-809 Len: 1008 Check: 2490 Weight: 1.00 Name: bmy_05402T0/1-694 Len: 1008 Check: 2676 Weight: 1.00 Name: BACU002800/1-950 Len: 1008 Check: 903 Weight: 1.00 // 1 50 ENSP00000411010/1-756 ---------- MVVTRSARAK ASIQAASAES SGQK------ ---------- ENSBTAP00000010317/1-766 ---------- MVVTRSARPQ ARNEATSVES LRQK------ ---------- ENSTTRP00000003958/1-809 ---------- MVVTRSARPQ AGIQTTSVES SQQK------ ---------- bmy_05402T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU002800/1-950 IRKTLNEWSS QISTDLVREF PDVLECTVSH AVEKINPDER EEMKVSAKLF 51 100 ENSP00000411010/1-756 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010317/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003958/1-809 ---------- ---------- ---------- ---------- ---------- bmy_05402T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU002800/1-950 IVGSNSSSST RNAVDMACSV LGVAQLDSVI IASPPIEDGV NLSLEHLQPY 101 150 ENSP00000411010/1-756 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010317/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003958/1-809 ---------- ---------- ---------- ---------- ---------- bmy_05402T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU002800/1-950 WEELQNLVHS KKIVAIGTSD LDKTQLEQLY QWAQVKPNSN QVNLASCCVM 151 200 ENSP00000411010/1-756 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010317/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003958/1-809 ---------- ---------- ---------- ---------- ---------- bmy_05402T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU002800/1-950 PPDLTAFAKQ FDIQLLTHND PKERCSGRWV ALGSRRVWGG AAEKPELAAR 201 250 ENSP00000411010/1-756 ------SFAA NGIQAHPESS TGS--DARTT AESQTTGKQS LIPRTPKARK ENSBTAP00000010317/1-766 ------NSAV TRLHVHPKGR KGSSPDNPNT TESQTTPERS ---PAPKTRK ENSTTRP00000003958/1-809 ------NSAA SRIQAHPKGQ KESPSDDPSI GESQTSREQS ---PAPKTRK bmy_05402T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU002800/1-950 SCVPSSANSA TRIQAHPKGR KESPSDDPSI AESQTTREQS ---PAPKTRK 251 300 ENSP00000411010/1-756 RKSRTTGSLP KGTEPSTDGE TSEAESNY-S VSEHHDTILR VTRRRQILIA ENSBTAP00000010317/1-766 --SGTTGSLP EMNKPATDGE ISEAESDCSS VPEVQDPVFR VTRRRQILVA ENSTTRP00000003958/1-809 RKSGTTGSLP GMNKPSTDGE ISEAESNCSS VSEAQDPILR VTRRRQILVA bmy_05402T0/1-694 ---------- -MNKPSTDGE ISEAESNCSS VSEAQDPILR VTRRRQILVA BACU002800/1-950 RRSGTTGSLP GMNKPSTDGE ISEAESNCSS VSEAQDPILR VTRRRQILVA 301 350 ENSP00000411010/1-756 CSPVSSVRKK PKVTPTKESY TEEIVSEAES HVSGISRIVL PTEKTTGARR ENSBTAP00000010317/1-766 GTPVSSVRKR LKITRVSESH TEEVVSEADS HVSGISRIMP PTEITT--RR ENSTTRP00000003958/1-809 GTPVSSVRKR LKITRVSESH TEEEVSEAES HISGISRIVH PTEITTRTRR bmy_05402T0/1-694 GTPVASVRKK LKITLVSESH TEEEVSEAES HISGISRIEH PTKI-TRTRR BACU002800/1-950 GTPVSSVRKK LKITLVSESR TEEEVSEAES HISGISRIVH PTEI-TRTRR 351 400 ENSP00000411010/1-756 SKAKSLTDPS QESHTEAISD AETSSSDIS- FSGIATRR-T RSMQRKLKAQ ENSBTAP00000010317/1-766 SKAKSQREPK QESHVEVISD AESSCSDIS- FSGIATRRTT RSMQRKLQAQ ENSTTRP00000003958/1-809 SKAKSRTYPN QESHVEANSD AESSCSDISS FSGIATRRTT RSMQRKLQAQ bmy_05402T0/1-694 SKAKSRTDPN QEYHVEANSD AESSCSDFSS FSGIATRRTT RSMQRKLQAQ BACU002800/1-950 SKAKSRTDPN QEYHVEANSD AESSCSDISS FSGIATRSTT RSMQRKLQAK 401 450 ENSP00000411010/1-756 TEKKDSKIVP GNEKQIVGTP VNSEDSDTRQ T-SHLQARSL SEINKPNFYN ENSBTAP00000010317/1-766 TEENNTKIVL ENEKEIIHTP VNLEDSVNRR T-SRLLARSL SQINKPNFSN ENSTTRP00000003958/1-809 TEENDTKIVP GNEKQIINTP VNLEDSDTRR T-SRLLARSL SQINKPNISN bmy_05402T0/1-694 TEENDTNIVP GNEKQIINTP VNLEDSDTRR TSSRLLARSL SQINKPHISN BACU002800/1-950 TEENGTNIVP GNEKQIINTP VNLEDSDTRR TSSRLLARAL SQINKPHISN 451 500 ENSP00000411010/1-756 NDFDDD---- -FSHRSSENI LTVH------ --EQAN-VES LKE-TKQNCK ENSBTAP00000010317/1-766 NEIYNDPD-D SFFGISGKKL AVKKTRNFTI REEKQDSISP LKEITKQNCK ENSTTRP00000003958/1-809 NETYDDPDND SFFGNSGKKL IVQK------ ---QDN-VSP LKEITKENCK bmy_05402T0/1-694 NETYDDPDND SFFGNSGKKL IVQKHQSFNI XEEKQD-VSP LKEITK-NCK BACU002800/1-950 NETYDDPDND SFFGNSGKKL IVQKHQSFNI REEKQD-VSP LKEITK-NCK 501 550 ENSP00000411010/1-756 DLDEDANGIT DEGKEINEKS SQLKNLSELQ DTSLQQLVSQ RHSTPQNKNA ENSBTAP00000010317/1-766 SLDEEAKKII DGGKEGNEKN SQL-NLSEFQ DTGLQQLVSQ RHSTPESDKT ENSTTRP00000003958/1-809 SLEEEAKGII DAGKEINEKN SQLKSLSELQ DASLQQLVSQ RHSTPESNKT bmy_05402T0/1-694 SLDEEAKGII DXGKEINEKN SQLKSLSELQ DTSLQQLVSQ RHSTPESNKT BACU002800/1-950 SLDEEAKGIT DVGKEINEKN SQLKSLSELQ DTSLQQLVSQ RHSTPESNKT 551 600 ENSP00000411010/1-756 VSVHSNLNSE AVMKSLTQTF ATVEVGRWNN NKKSPIKASD LTKFGDCGGS ENSBTAP00000010317/1-766 TSESSTLNHE AVMKSLAQTF AVVEMDRWNE ERKNAIKTSD CSEPGDGSYS ENSTTRP00000003958/1-809 TSASSNLNCE AVMKSLAQTF AVVEVDRWNE ERNSSIKTSD WIELGDGDDN bmy_05402T0/1-694 TSASSNLNSE AVMKSLAQTF AVVEVNRWNE ERNSSIKTSD WPELGDGGDS BACU002800/1-950 TSASSNVNSE AVMKSLAQTF AVVEVNRWNE ERNSSIKTSD WPELGDGGDS 601 650 ENSP00000411010/1-756 DDEEESTVIS VSEDMNSEGN VDFECDTKLY TSAPNTSQGK DNSVLLVLSS ENSBTAP00000010317/1-766 DSDEECTVIG VSEDMSKEKE VDSESDTKPS NLEFNTTQDK DDSVLLVLSS ENSTTRP00000003958/1-809 DEEEECTVIG VGKDMSKERD VDFECDTKLC EVEPSTSQDK DDSVLLVLSS bmy_05402T0/1-694 DEEEECTVIG VGEDMSKEXD VDSECDTKLC KLEPSTSQDK DDSVLLVLSS BACU002800/1-950 D-EEECTVIG VGEDMSKERD VDSECDTKLC KLEPSTSQDK DDSVLLVLSS 651 700 ENSP00000411010/1-756 DESQQSENSE NEEDTLCFVE NSGQRESLSG DTGSLSCDNA LFVIDTTPGM ENSBTAP00000010317/1-766 DESQQSEHSE NEEDTVCFVE NNGNKESLNG DSENLSHDNA LFVIDTTPGL ENSTTRP00000003958/1-809 DESQQSENSE NEEDTVCFIE NSGQKESLNG DSENTSPDNA LFVIDTTPRL bmy_05402T0/1-694 DESQQSENSE NEEDTVCFVE NSGQKESLNG DSENTSRDNA LFVIDTTPRL BACU002800/1-950 DESQQSENSE NEEDTVCFVE NSGQKESLNG DSENTSRDNV LFVIDTTPRL 701 750 ENSP00000411010/1-756 SADKNFYLEE EDKASEVAIE EEKEEEEDEK SEEDSSDHDE NED-EFSDEE ENSBTAP00000010317/1-766 SADKNFYLDE EDKAGEVATE EE-EEEEEEE SEEELSDHDR NKDNEFSDED ENSTTRP00000003958/1-809 SADKNFCLDE EDKASEVATE ---EEEEEEE SEEEPSDSDR SKDNEFSDED bmy_05402T0/1-694 SADKNFYLDE EDKASEVATE E--EKEEEEE SEEEPSDSDR SKDNEFSDED BACU002800/1-950 SADKNFYLDE EDKASEVATE ---EEKEEEE SEEEPSDSDR SKDNEFSDED 751 800 ENSP00000411010/1-756 DFLNSTKAKL LKLTSSSIDP GLSIKQLGGL YINFNADKLQ SNKRTLTQIK ENSBTAP00000010317/1-766 NLLSNTKSKL LKLMSSSIDT GLNIKELGGL YINFNADKVQ LNKRTLTQMK ENSTTRP00000003958/1-809 NLLNSTKSKL LKLTSSSIDP GLSIKQLGGL YINVNADKLQ LNKRTLTQIK bmy_05402T0/1-694 NLLNSTKSKL LKLTSSSIDP GLSIKQLGGL YINVNADRLQ LNKRTLTQIK BACU002800/1-950 NLLNSTKSKL LKLTSSSIDP GLSIKQLGGL YINVNADRLQ LNKRTLTQIK 801 850 ENSP00000411010/1-756 EKKKNELLQK AVITPDFEKN HCVPPYSESK YQLQKKRRKE RQKTAGDGWF ENSBTAP00000010317/1-766 EKRKDELLQK TVITPEFEKN YCVPPYSESK YKLQKKRRQE RQKTAGDGWF ENSTTRP00000003958/1-809 EKKKNELLQK AVITPDFEKN YCVPPYSESK YKLQKKRRQE RQKTAGDGWF bmy_05402T0/1-694 EKKKNELLQK TVITPDFEKN YCVPPYSESK YKLQKKRRQE RQKTAGDGWF BACU002800/1-950 EKKKNELLQK TVITPDFEKN DCVPPYSESK YKLQKKRRQE RQKTAGDGWF 851 900 ENSP00000411010/1-756 GMKAPEMTNE LKNDLKALKM RASMDPKRFY KKNDRDGFPK YFQIGTIVDN ENSBTAP00000010317/1-766 GMKAPELTDE LKNDLKALKM RASMDPKRFY KKNDRDGFPK YFQIGTIVDN ENSTTRP00000003958/1-809 GMKAPELTDE LKNDLKALKM RASMDPKRFY KKNDRDGFPK YFQIGTIVDN bmy_05402T0/1-694 GMKAPELTDE LKNDLKALKM RASMDPKRFY KKNDRDGFPK YFQIGTIVDN BACU002800/1-950 GMKAPELTDE LKNDLKALKM RASMDPKRFY KKNDRDGFPK YFQIGTIVDN 901 950 ENSP00000411010/1-756 PADFYHSRIP KKQRKRTIVE ELLADSEFRR Y------NRR KYSEIMAEKA ENSBTAP00000010317/1-766 PADFYHSRVP KKQRKRTIVE ELLADSEFRR Y------NRR KYSEIMAEKA ENSTTRP00000003958/1-809 PADFYHSRVP RKQRKRTIVE ELLADSEFRR FGFSFDITEG STQRLWLKRQ bmy_05402T0/1-694 PADFYHSRVP RKQRKRTIVE ELLADSEFRR Y------NRR KYSEIMAEKA BACU002800/1-950 PADFYHSRVP RKQRKRTIVE ELLADSEFRR Y------NRR KYSEIMAEKA 951 1000 ENSP00000411010/1-756 ANAAGKKFRK KKKF------ ---------- ---------- ---------- ENSBTAP00000010317/1-766 ANAAGKKFRK KKKF------ ---------- ---------- ---------- ENSTTRP00000003958/1-809 QMQQERSFER RRSFAIKIHQ ANHKILHLPF ILLKIFKLTP SHKLHSLALF bmy_05402T0/1-694 ANAAGKKFRK KKKF------ ---------- ---------- ---------- BACU002800/1-950 ANAAGKKFRK KKKF------ ---------- ---------- ---------- 1001 1050 ENSP00000411010/1-756 ------RN ENSBTAP00000010317/1-766 ------RN ENSTTRP00000003958/1-809 IGFLFGKS bmy_05402T0/1-694 ------RN BACU002800/1-950 ------RN