KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:42 2014 Check: 00 .. Name: ENSP00000273283/1-911 Len: 911 Check: 9925 Weight: 1.00 Name: ENSBTAP00000010318/1-906 Len: 911 Check: 1121 Weight: 1.00 Name: ENSTTRP00000002104/1-901 Len: 911 Check: 8738 Weight: 1.00 Name: bmy_11572T0/1-861 Len: 911 Check: 1237 Weight: 1.00 Name: BACU005570/1-861 Len: 911 Check: 1831 Weight: 1.00 // 1 50 ENSP00000273283/1-911 MDGAMGPRGL LLCMYLVSLL ILQAMPALGS ATGRSKSSEK RQAVDTAVDG ENSBTAP00000010318/1-906 ----MGLRG- LLCVCLVSLL ALQAVAAQGS PTRNPKGGKK RMAVDAAVDG ENSTTRP00000002104/1-901 MRGTMGLRG- LLCVCLASLL TLQAMPAQGS PARSPEGGKK RLALHTAVDG bmy_11572T0/1-861 MHGTMGLRG- LLCVCLASLL TLQAMPAQGS PTRSPKGGK- ------AVDG BACU005570/1-861 ----MGLRG- LLCVCLASLL ALQAMPAQGS PTRSPKGGKK RPALDTAVDG 51 100 ENSP00000273283/1-911 VFIRSLKVNC KVTSRFAHYV VTSQVVNTAN EAREVAFDLE IPKTAFISDF ENSBTAP00000010318/1-906 VVIRSLKVNC KVTSRFAHYI ITSQVVNSAD TAKEVSFNVE IPKTAFISDF ENSTTRP00000002104/1-901 VVIQSLKVNC KVTSRFSHCV ITSQVVNNAD EAKEVAFDVE IPRRAFISDF bmy_11572T0/1-861 VVIRSLKVNC KVTSRFAHCV ITSQVVNNAD EAKEVAFDVE IPRTAFISDF BACU005570/1-861 VVIRSLKVNC KVTSRFAHCV ITSQVVNNAD EAKEVAFDVE IPRTAFISDF 101 150 ENSP00000273283/1-911 AVTADGNAFI GDIKDKVTAW KQYRKAAISG ENAGLVRASG RTMEQFTIHL ENSBTAP00000010318/1-906 AITADENAFT GDIKDKVTAW KQYRKAAISG ENAGLVRASG RTMEQFSIHI ENSTTRP00000002104/1-901 AITAGENAFL GDIKDKVTAW KQYRKAAISG ENAGLVXXXX XXXXXXXXQV bmy_11572T0/1-861 AITAGENAFL GDIKDKVTAW KQYRKAAISG ENTGLVRASG RTMEQFAIQV BACU005570/1-861 AITAGENAFL GDIKDKVTAW KQYRKAAVSG ENAGLVRASG RTMEQFAIQV 151 200 ENSP00000273283/1-911 TVNPQSKVTF QLTYEEVLKR NHMQYEIVIK VKPKQLVHHF EIDVDIFEPQ ENSBTAP00000010318/1-906 IVGPRSKATF RLTYEEVLRR KLMQYDIVIK VKPQQLVQHF EIDVDIFEPQ ENSTTRP00000002104/1-901 TIGPRSKATF RLTYEEVLRR KLMQYDIVIK VKPKQLVQHF EIDVDIFEPR bmy_11572T0/1-861 TIGPRSKATF RLTYEEVLKR KLMQYDIVIK VKPKQLVQHF EIDVDIFEPR BACU005570/1-861 TIGPRSKATF RLTYEEVLKR KLMQYDIVIK VKPKQLVQHF E--------- 201 250 ENSP00000273283/1-911 GISKLDAQAS FLPKELAAQT IKKSFSGKKG HVLFRPTVSQ QQSCPTCSTS ENSBTAP00000010318/1-906 GIRKLDVEAS FLPKELAAQL IKKSFSGKKG HVLFRPTVSQ QQTCPTCSTT ENSTTRP00000002104/1-901 GISKLDAQAS FLPKERAAQL IKKSFSGKEG HVLFRPTVGQ QQSCPTCSMT bmy_11572T0/1-861 GISKLDAQAS FLRKELAAQL IKKSFSGKEG HVLFHPTVGQ QQSCPTCSTT BACU005570/1-861 ---------- ---------- ---------G HVLFRPTVRQ QQSCPTCSTT 251 300 ENSP00000273283/1-911 LLNGHFKVTY DVSRDKICDL LVANNHFAHF FAPQNLTNMN KNVVFVIDIS ENSBTAP00000010318/1-906 LLNGDFKVTY DVNRDDACDL LVANNYFAHF FAPQNLKKLN KNVVFVIDIS ENSTTRP00000002104/1-901 LLNGDFKVTY DVNRDKACDL LVADNHFAHF FAPQNLTKLN KNVVFVIDIS bmy_11572T0/1-861 LLNGDFKVTY DVNRDKACDL LVADNHFAHF FAPQNLTNLN KNVVFVIDIS BACU005570/1-861 LLNGNFKVTY DVNRDKACDL LVADNHFAHF FAPQNLTNLN KNVVFVIDIS 301 350 ENSP00000273283/1-911 GSMRGQKVKQ TKEALLKILG DMQPGDYFDL VLFGTRVQSW KGSLVQASEA ENSBTAP00000010318/1-906 SSMEGQKLKQ TKEALHKILG DMRPGDYFDL VLFGSAVQSW KGSLVQASPA ENSTTRP00000002104/1-901 FSMEGQKVKQ TKEALLKILG DLRPGDYFDL VLFGSAVQSW RGSLVQASAA bmy_11572T0/1-861 SSMEGQKVKQ TKEALLKILG DLRPGDYFDL VLFGSAVQSW RGSLVQASAA BACU005570/1-861 SSMEGQKVKQ TKEALLKILG DLRPGDYFDL VLFGSAVQSW RGSLVQASAA 351 400 ENSP00000273283/1-911 NLQAAQDFVR GFSLDEATNL NGGLLRGIEI LNQVQESLPE LSNHASILIM ENSBTAP00000010318/1-906 NLEAARNFVQ QFSLAGATNL NGGLLRGIEI LNKAQQSLPE LSNHASILIM ENSTTRP00000002104/1-901 NLDAARNFVQ HFSLAGSTNL NGGLLQGIEI LNKAQGSLPE LSNHASILIM bmy_11572T0/1-861 NLDAARNFVQ HFSLAGW--- ---------- ---------- ---------- BACU005570/1-861 NLDAARNFVQ HFSLAGSTNL NGGLLQGIEI LNKAHGSLPE LSNHASILIM 401 450 ENSP00000273283/1-911 LTDGDPTEGV TDRSQILKNV RNAIRGRFPL YNLGFGHNVD FNFLEVMSME ENSBTAP00000010318/1-906 LTDGEPTEGV MDRTQILKNV RDGIKGRFPL YNLGFGHDVD LNFLEVMSLE ENSTTRP00000002104/1-901 LTDGEPTEGV TDHTQILKNV RDAIRGKFPL YNLGFGHDVD LKFLEVMSLE bmy_11572T0/1-861 ---------V TDRAQILKNV RDAIRGKFPL YNLGFGHDVD LKFLEVMSLE BACU005570/1-861 LTDGEPTEGV TDRAQILKNV RDAIRGKFPL YNLGFGHDVD LKFLEVMSLE 451 500 ENSP00000273283/1-911 NNGRAQRIYE DHDATQQLQG FYSQVAKPLL VDVDLQYPQD AVLALTQNHH ENSBTAP00000010318/1-906 NNGRVQRIYE DHDATQQLQG FYEQVANPLL RDVELLYPRE AVSDLTQHRH ENSTTRP00000002104/1-901 NNGRVQRIYE DHDATQQLQG FYEQVANPLL RDVELLYPRD AVSALTQHHH bmy_11572T0/1-861 NNGRVQRIYE DHDATQQLQG FYEQVANPLL RDVELQYPGD AVSALTQHHH BACU005570/1-861 NNGRVQRIYE DHDATQQLQG FYKQVANPLL RDVELQYPGD AVSALTQHHH 501 550 ENSP00000273283/1-911 KQYYEGSEIV VAGRIADNKQ SSFKADVQAH GEGQEFSITC LVDEEEMKKL ENSBTAP00000010318/1-906 KQYYEGSEIM VAGRIADHKL SSFKADVRAH GEGQEFMTTC LVDEEEMKKL ENSTTRP00000002104/1-901 KQYYEGSEII VAGSIADHKR SSFKADVQAY GEGQEFKTTC LVDEEEMKKL bmy_11572T0/1-861 KQYYEGSEII VAGRIADHKL SSFKADVQAY GEGQEFKTTC LVDEEEMKKL BACU005570/1-861 KQYYEGSEII VAGRIADHKL SSFKADVQAY GEGQEFKTTC LVDEEEMKKL 551 600 ENSP00000273283/1-911 LRERGHMLEN HVERLWAYLT IQELLAKRMK VDREERANLS SQALQMSLDY ENSBTAP00000010318/1-906 LRERGHMLEN HVERLWAYLT IQELLAKRMK LEGQEKANVS AKALQMSLAY ENSTTRP00000002104/1-901 LRERGHMLEN HVERLWAYLT IQELLAK-MK LEGAEKANVS AEALKMSLAY bmy_11572T0/1-861 LRERGHMLEN HVERLWAYLT IQELLAKRMK LEGAEKANVS AKALKMSLAY BACU005570/1-861 LRERGHMLEN HVERLWAYLT IQELLAKRMK LEGAEKANVS AKALKMSLAY 601 650 ENSP00000273283/1-911 GFVTPLTSMS IRGMADQDGL KPTIDKPSED SPPLEMLGPR RTFVLSALQP ENSBTAP00000010318/1-906 QFVTPLTSMT VRGMTDQDGL EPIIDKPLDD YLPLEMVGPR KTFMLQASQP ENSTTRP00000002104/1-901 QFVTPLTSMT VRGMADQDGL EPLIDKALED SLPLEMVGPR KTFVLLASQP bmy_11572T0/1-861 QFVTPLTSMT IRGMADQDGL EPLIDKPLDD SLPLETVGPR KTFVLLASQP BACU005570/1-861 QFVTPLTSMT IRGMADQDGL EPLIDKPLDD SLPLA----- --FVLLASQP 651 700 ENSP00000273283/1-911 SPTHSSSNTQ RLPDRVTGVD TDPHFIIHVP QKEDTLCFNI NEEPGVILSL ENSBTAP00000010318/1-906 APTHSSLDIK KLPDQVTGVD TDPHFLIHVP QKEDTLCFNI NEEPGVVLSL ENSTTRP00000002104/1-901 SPTRPSS--- -----VTGVD TDPHFLIHVP QKEDTLCFNI NEEPGVVLSL bmy_11572T0/1-861 SPTRPSSEVQ QLPNQVTGVD TDPHFLIHVP QKEDTLCFNI NEEPGVVLSL BACU005570/1-861 SPTRPSSEVQ QLPNQVTGVD TDPHFLIHVP QKEDTLCFNI NEEPGVVLSL 701 750 ENSP00000273283/1-911 VQDPNTGFSV NGQLIGNKAR SPGQHDGTYF GRLGIANPAT DFQLEVTPQN ENSBTAP00000010318/1-906 VQDPDTGFSV NGQLIGNEAG SPGKHEGTYF GRLGIANPAT DFQLEVTPQN ENSTTRP00000002104/1-901 VQDPDTGFSV NGQLIGNEAS GPGKHEGTYF GRLGIANPAT GFQLEVTPQN bmy_11572T0/1-861 VQDPDTGFSV NGQLISNEAR SPGKHEGTYF GRLGIANPAT DFQLEVTPQN BACU005570/1-861 VQDPDTGFSV NGQLIGNEAR SPGKHEGTYF GRLGIANPAT DFQLEVTPQN 751 800 ENSP00000273283/1-911 ITLNPGFGGP VFSWRDQAVL RQDGVVVTIN KKRNLVVSVD DGGTFEVVLH ENSBTAP00000010318/1-906 ITLNPGSGGP VFSWRDQAFL RQNEVLVTIN RKRNLVVSVE DGGTFEVVLH ENSTTRP00000002104/1-901 ITLNPGSGGS IFSWRDQASL RQNEVVVTIN RKRNLVVSVE DGGTFEVVLH bmy_11572T0/1-861 ITLNPGSGGP IFSWRDQASL RQNEVVVTIN RKKNLVVSVE DGGTFEVVLH BACU005570/1-861 ITLNPGSGGP IFSWRDQASL QQNEVVVTIN RKRNLVVSVE DGGTFEVVLH 801 850 ENSP00000273283/1-911 RVWKGSSVHQ DFLGFYVLDS HRMSARTHGL LGQFFHPIGF EVSDIHPGSD ENSBTAP00000010318/1-906 RVWRGSAVRQ DFLGFYVLDS HRMSARTHGL LGQFFHPFDY KVSNLHPGSD ENSTTRP00000002104/1-901 RVWKGSAICQ DFLGFYVLDS HWMSARTHGL LGQFFHPFDY KVFDLHPGSD bmy_11572T0/1-861 RVWKGSAIRQ DFLGFYVLDS HRMSARTHGL LGQFFHPFDY KVFDLHPGSD BACU005570/1-861 RVWKGSAIRQ DFLGFYVLDS HRMSARTHGL LGQFFHPFDY KVFDLHPGSD 851 900 ENSP00000273283/1-911 PTKPDATMVV RNRRLTVTRG LQKDYSKDPW HGAEVSCWFI HNNGAGLIDG ENSBTAP00000010318/1-906 PTKTDATMVV KNRRLTVTRG LQKDYRKDPR HGAEVTCWFI HNNGDGLIDG ENSTTRP00000002104/1-901 PTKTDATMVV KKRRLTVTRG LQKDYSKDPR HGAEVTCWFI HNNGDGLIDG bmy_11572T0/1-861 PTKTDATMVV KKRRLTVTRG LQKDYSKDPR HGAEVTCWFI HNNGDGLIDG BACU005570/1-861 PTKTDATMVV KKRRLTVTRG LQKDYSKDPR HGAEVTCWFI HNNGDGLIDG 901 950 ENSP00000273283/1-911 AYTDYIVPDI F ENSBTAP00000010318/1-906 IHTDYIVPDI F ENSTTRP00000002104/1-901 VHTDYIVPDI F bmy_11572T0/1-861 VHTDYIVPDI F BACU005570/1-861 AHTDYIVPDI F