KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:43 2014 Check: 00 .. Name: ENSP00000415769/1-890 Len: 911 Check: 2407 Weight: 1.00 Name: ENSBTAP00000010322/1-891 Len: 911 Check: 5661 Weight: 1.00 Name: ENSTTRP00000002122/1-853 Len: 911 Check: 7358 Weight: 1.00 Name: bmy_11573T0/1-880 Len: 911 Check: 9545 Weight: 1.00 Name: BACU005571/1-882 Len: 911 Check: 7421 Weight: 1.00 // 1 50 ENSP00000415769/1-890 MAFAWWPCLI LALLSSLAAS GFPRSPFRLL GKRSLPEGVA NGIEVYSTKI ENSBTAP00000010322/1-891 MALAQWPYLI LALLSGLAVS GFPRNPSLLL GKRSLPGRAV DGIEVYSTKV ENSTTRP00000002122/1-853 ---------- ---------- ---------- -KRSLPEGVV DGIEVYGTKV bmy_11573T0/1-880 MASARWPCLI LALLSGVAVS GFPRRLCRLL GKRSLPEGVV DGIEVYSTKV BACU005571/1-882 MASARWPCLI LALLSGVAVS GFPRRLCRLL GKRSLPEGVV DGIEVYSTKV 51 100 ENSP00000415769/1-890 NSKVTSRFAH NVVTMRAVNR ADTAKEVSFD VELPKTAFIT NFTLTIDGVT ENSBTAP00000010322/1-891 NCKVTSRFAH NVVTTRAVNH ANTAKEVSFD VELPKTAFIT NFTLTIDGVT ENSTTRP00000002122/1-853 HCKVTSRFAH NVVTTRAVNH ADTAKEVSFN VELPKTAFIT NFTLTIDGVT bmy_11573T0/1-880 HCKVTSRFAH SVVTTGAVNH ADTAKEVSFD VELPKTAFIT NFTLTIDGVT BACU005571/1-882 HCKVTSRFAH NVVTTGAVNH ADTAKEVSFD VELPKTAFIT NFTLTIDGVT 101 150 ENSP00000415769/1-890 YPGNVKEKEV AKKQYEKAVS QGKTAGLVKA SGRKLEKFTV SVNVAAGSKV ENSBTAP00000010322/1-891 YPGKVKEKEV AKKQYEKAVS QGKTAGLVKA SGRKLEKFTV SVNVAAGSKV ENSTTRP00000002122/1-853 YPGNVKEKEV AKKQYEKAVS QGKTAGLVKA SGRKLEKFTV SVNVAAGSKV bmy_11573T0/1-880 YPGSVKEKEV AKKQYEKAVS QGKTAGLVKA SGRKLEKFTV SVNVAAGSKV BACU005571/1-882 YPGNVKEKEV AKKQYEKAVS QGKTAGLVKA SGRKLEKFTV SVNVAAGSKV 151 200 ENSP00000415769/1-890 TFELTYEELL KRHKGKYEMY LKVQPKQLVK HFEIEVDIFE PQGISMLDAE ENSBTAP00000010322/1-891 TFELTYEELL KRHKGKYEMY LKVQPKQLVK HFEITVDIFE PQGISTLDAE ENSTTRP00000002122/1-853 TFELTYEELL KRHKGKYEMY LKVQPKQLVK HFEITADIFE PQGISTLDAE bmy_11573T0/1-880 TFELTYEELL KRHNGKYEMY LKVQPKQLVK HFEITADIFE PQGISTLDAE BACU005571/1-882 TFELAYEELL KRHNGKYEMY LKVQPKQLVK HFEITADIFE PQGIRTLDAE 201 250 ENSP00000415769/1-890 ASFITNDLLG SALTKSFSGK KGHVSFKPSL DQQRSCPTCT DSLLNGDFTI ENSBTAP00000010322/1-891 ASFITNDLLG SALTKSFSGK KGHVSFKPSL DQQRSCPTCT DSLLKGDFII ENSTTRP00000002122/1-853 ASFITNDLLS SALTKSFSGK KGHVSFKPSL DQQRSCPTCT DSLLKGDFII bmy_11573T0/1-880 ASFITNDLLS SALTKSFSGK KGHVSFKPSL DQQRSCPTCK DSLLKGDFII BACU005571/1-882 ASFITNDLLS SALTKSFSGK KGHVSFKPSL EQQRSCPTCT DSLLKGDFII 251 300 ENSP00000415769/1-890 TYDVNRESPG NV-------- ---------- --QIVNGYFV HFFAPQGLPV ENSBTAP00000010322/1-891 TYDVNRESPA NV-------- ---------- --QIVNGYFV HFFAPQGLPV ENSTTRP00000002122/1-853 TYDVNRESPA NV-------- ---------- --QIVNGYFV HFFAPQGLPV bmy_11573T0/1-880 TYDVNRESPA NVHVANVRLL KGHWPPLSLS PFQIVNGYFV HFFAPQGLPV BACU005571/1-882 TYDVNRESPA NV-------- ---------- --QIVNGYFV HFFAPQGLPV 301 350 ENSP00000415769/1-890 VPKNVAFVID ISGSMAGRKL EQTKEALLRI LEDMQEEDYL NFILFSGDVS ENSBTAP00000010322/1-891 VPKSVVFVID VSGSMHGRKM EQTKDALLKI LEDVKQDDYL NFILFSGDVT ENSTTRP00000002122/1-853 VPKNVVFVID VSGSMHGRKM EQTKDALLKI LEDVKEDDYL NFILFSGGVT bmy_11573T0/1-880 VPKNVIFVID VSGSMHGRKM EQTKDALLKI LEDVKEDDYL NFILFSGGVT BACU005571/1-882 VPKNVIFVID VSGSMRGRKM DQTKDALLKI LEDVKEDDYL NFILFSGGVT 351 400 ENSP00000415769/1-890 TWKEHLVQAT PENLQEARTF VKSMEDKGMT NINDGLLRGI SMLNKAREEH ENSBTAP00000010322/1-891 TWKDSLVPAT PENIQEASKF VMDIQDRGMT NINDALLRGI SMLNKAREEH ENSTTRP00000002122/1-853 TWKDTLVQAT PENIQEARKF VMNIRDQGMT NINDALLKGI SMLNKDWEEY bmy_11573T0/1-880 TWKDTLVQAT PENIQEARKF VMNIRDQGMT NINDALLRGI SMLNKAREEY BACU005571/1-882 TWKDTLVQAT PENIQEARKF VMNIRDQGMT NINDALLRGI SMLNKAREEY 401 450 ENSP00000415769/1-890 RIPERSTSIV IMLTDGDANV GESRPEKIQE NVRNAIGGKF PLYNLGFGNN ENSBTAP00000010322/1-891 TVPERSTSII IMLTDGDANV GESRPEKIQE NVRNAIGGKF PLYNLGFGNN ENSTTRP00000002122/1-853 RVLERSTSIV IMLTDGDANV GESRPEKIQE NVRNAIGGKF PLYNLGFGNN bmy_11573T0/1-880 RVPERSTSIV IMLTDGDANV GEAAGVILAA APGSVAGVLQ DLGQLSPGSP BACU005571/1-882 RVPERSTSIV IMLTDGDANV GESRPEKIQE NVRNAIGGKF PLYNLGFGNN 451 500 ENSP00000415769/1-890 LNYNFLENMA LENHGFARRI YEDSDADLQL QGFYEEVANP LLTGVEMEYP ENSBTAP00000010322/1-891 LNYNFLENMA LENHGLARRI YEDSDANLQL QGFYEEVANP LLTGVEVEYP ENSTTRP00000002122/1-853 LNYNFLERMA LENHGLARRI YEDSDANVQL QGFYEEVANP LLTDVEMEYP bmy_11573T0/1-880 ---------- ---------- ---------- TGFYEEVANP LLTDVEVEYP BACU005571/1-882 LNYNFLERMA LENHGLARRI YEDSDANLQL QGFYEEVANP LLTDVEVEYP 501 550 ENSP00000415769/1-890 ENAILDLTQN TYQHFYDGSE IVVAGRLVDE DMNSFKADVK GHGATNDLTF ENSBTAP00000010322/1-891 QNAILDLTQN SYQHFYDGSE IVVAGRLADE DMNSFKAAVK GHGAINDLTF ENSTTRP00000002122/1-853 ENAILDLTQN SYQHFYDGSE IVVAGRLADE DMNSFKADVK GHGAINDLTF bmy_11573T0/1-880 KNAILDLTQN SYQHFYDGSE IVVAGRLAAE DMNSFKADVK GHGAINDLTF BACU005571/1-882 KNAILDLTRN SYQHFYDGSE IVVAGRLAAE DMNSFKADVK GHGAINDLTF 551 600 ENSP00000415769/1-890 TEEVDMKEME KALQERDYIF GNYIERLWAY LTIEQLLEKR KNAHGEEKEN ENSBTAP00000010322/1-891 TEEVDMKEME KALQERDYIF GDYIERLWAY LTIEQLLDKR KNAQGEEKEI ENSTTRP00000002122/1-853 TEELDMKEME KALKERDYIF GN---ELLYH LTIEQLLEKC KNAHGEEKEN bmy_11573T0/1-880 TEEVDVKEME KALKERDYIF GNYIERLWAY LTIEQLLERR KNAHGEEKEN BACU005571/1-882 TEEVDVKEME KALKERDYIF GNYIERLWAY LTIEQLLERR KNAHGEEKEN 601 650 ENSP00000415769/1-890 LTARALDLSL KYHFVTPLTS MVVTKPEDNE DERAIADKPG EDAEATPVSP ENSBTAP00000010322/1-891 LTAQALELSL KYHFVTPLTS MVVTKPEDNE NQTAIANKPG EGPLDAEEVP ENSTTRP00000002122/1-853 LTAQALDLSL KYHFVTPLTS MVVTKPEDNE NKTAIADKPG EGFF--FVIP bmy_11573T0/1-880 LTAQALDLSL KYHFVTPLTS MVVTKPEDNE NKTAIADKPG EGPVDAEVIP BACU005571/1-882 LTAQALDLSL KYHFVTPLTS MVVTKPEDNE NKTAIADKPG EGPVDAE--- 651 700 ENSP00000415769/1-890 AMSYLTSYQP PQNPYYYVDG DPHFIIQIPE KDDALCFNID EAPGTVLRLI ENSBTAP00000010322/1-891 SMAYLTSYQA PQTPYYYVDG DPHFIIQIPE KDDAICFNID EDPGTVLRLI ENSTTRP00000002122/1-853 SMAYLTNYQP PQTP-YYVDG DPHFIIQVPE KDDAICFNID EDPGTVLRLI bmy_11573T0/1-880 SMAYLTNSQP PQTP-YYVDG DPHFIIQVPE KDDAICFNID EDPGTVLRLI BACU005571/1-882 -----ANSQP PQTP-YYVDG DPHFIIQVPE KDDAICFNID EDPGTVLRLI 701 750 ENSP00000415769/1-890 QDAVTGLTVN GQITGDKRGS PDSKTRKTYF GKLGIANAQM DFQVEVTTEK ENSBTAP00000010322/1-891 QDPVTGLTVN GQIIGEKTGR SDSQTRRTYF GKLGIASAQM DFRIEVTREN ENSTTRP00000002122/1-853 QDPVTGLTVN GQIIGEKRSS LDSQTRKTYF GKLGIANAQM DFQIEVTPER bmy_11573T0/1-880 QDPVTGLTVN GQIIGEKRSS LDSQTRKTYF GKLGIANAQM DFQIEVTPET BACU005571/1-882 QDPVTGLTVN GQIIGEKRSS LDSQTRKTYF GKLGIANAQM DFQIEVTPET 751 800 ENSP00000415769/1-890 ITLWNRAVPS TFSWLDTVTV TQDGLSMMIN R-KNMVVSFG DGVTFVVVLH ENSBTAP00000010322/1-891 ITLWNGDSLS TFSWLDTVMV TQDGLSVMIN RKKNMVVSFG DGVTFVVVLH ENSTTRP00000002122/1-853 ITLWHGAAQS TFSWLDTVTV TQDGLSVTID R-KNMVVSFG DGVTFVVVLH bmy_11573T0/1-880 ITLWHGAAQS TFSWLDTVMI TQDGLSVTIN RKKNMVVSFG DGVTFVVVLH BACU005571/1-882 ITLWHGAAQS TFSWLDTVMV TQDGLSVTIN RKKNMVVSFG DGVTFVVVLH 801 850 ENSP00000415769/1-890 QVWKKHPVHR DFLGFYVVDS HRMSAQTHGL LGQFFQPFDF KVSDIRPGSD ENSBTAP00000010322/1-891 QVWKKEPAHH DFLGFYVVNS RGMSAQTHGL LGQFFHPFDF QVSDVHPGSD ENSTTRP00000002122/1-853 QVWKKQPIHH DFLGFYVVDS HRMSAQTHGL LGQFFHPFDF KVSDVHPGSD bmy_11573T0/1-880 QVWKKQPIHH DFLGFYVVDS HRMSAQTHGL LGQFFHPFDF KVSDVHPGSD BACU005571/1-882 QVWKKQPIHH DFLGFYVVDS HRMSAQTHGL LGQFFHPFDF KVSDVHPGSD 851 900 ENSP00000415769/1-890 PTKPDATLVV KNHQLIVTRG SQKDYRKDAS IGTKVVCWFV HNNGEGLIDG ENSBTAP00000010322/1-891 PTKPDATMVV KNHQLTVTRG SQKDYRKDIS VGRNVACWFV HNNGQGLIDG ENSTTRP00000002122/1-853 PTKPDATMVV KNHWLTVTRG SQKDYRKDVS VGTKVACWFV HNNGQGLIDG bmy_11573T0/1-880 PTKPDATMVV KNHRLTVTRG SQKDYRKDVS VGTNVACWFV HNNGQGLIDG BACU005571/1-882 PTKPDATMVV KNHRLTVTRG SQKDYRKDVS VGTNVACWFV HNNGQGLIDG 901 950 ENSP00000415769/1-890 VHTDYIVPNL F ENSBTAP00000010322/1-891 IHRDYIVPNL F ENSTTRP00000002122/1-853 VHSDYIVPSL F bmy_11573T0/1-880 VHSDYIVPNL F BACU005571/1-882 VHSDYIVPNL F