KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:40:45 2014 Check: 00 .. Name: ENSP00000352172/1-540 Len: 567 Check: 3861 Weight: 1.00 Name: ENSBTAP00000010329/1-471 Len: 567 Check: 2420 Weight: 1.00 Name: bmy_09859T0/1-444 Len: 567 Check: 8352 Weight: 1.00 Name: ENSTTRP00000000618/1-510 Len: 567 Check: 4840 Weight: 1.00 // 1 50 ENSP00000352172/1-540 MAAGGSAPEP RVLVCLGALL AGWVAVGLEA VVIGEVHENV TLHCGNISGL ENSBTAP00000010329/1-471 LWISRQVKPL GFCISL---- -TFPCTGLEA VTIGEIHENI TLHCGNISGP bmy_09859T0/1-444 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000618/1-510 ---------- ---------- -------LEA VVIGEVHENI TLRCGNILGP 51 100 ENSP00000352172/1-540 RGQVTWYRNN SEPVFLLSSN SSLRPAEPRF SLVDATSLHI ESLSLGDEGI ENSBTAP00000010329/1-471 RGLVTWCRND SESVFLLSSS SSLPPAQSRF SLVNASALHI EALNLQDEGN bmy_09859T0/1-444 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000618/1-510 RGLITWYRND SEPVFLLSSN SSLPPAQPRF SLVNASSLHM EALSLQDEGN 101 150 ENSP00000352172/1-540 YTCQEILN-- VTQWFQVWLQ VASGPYQIEV HIVATGTLPN GTLYAARGSQ ENSBTAP00000010329/1-471 YTCSEVLNKT ETRRFQVWLQ VANGPSQVEV NISSTGRLPN GTLYAAKGSQ bmy_09859T0/1-444 ---------- ---------- FPGGPYQVEV NISSTGRLPN GTLYAAKGSQ ENSTTRP00000000618/1-510 YTCWEVLN-- ETRWFQVWLQ VARGPYQVEV NISSTGRLPN GTLYAAKGSQ 151 200 ENSP00000352172/1-540 VDFSCNSSSR PPPVVEWWFQ ALNSSSESFG HNLTVNFFSL LLISPNLQGN ENSBTAP00000010329/1-471 VDFSCSSRSQ PPPVIEWWFQ APDSTTELFG NNLTASCFTL LLMSQNLQGN bmy_09859T0/1-444 VDFCCSSSSW PPPMVEWWFR APDSSTEPFG NNLTASCFTL LLMSQNLQGN ENSTTRP00000000618/1-510 VDFCCSSSSW PPPMVEWWFR APDSSTEPFG NNLTASCFKL FLMSQNLQGN 201 250 ENSP00000352172/1-540 YTCLALNQLS KRHRKVTTEL LVYYPPPSAP QCWAQMASGS FMLQLTCRWD ENSBTAP00000010329/1-471 YTCLAKNVLS GRHRKVTTEL LVYSPPPSAP QCWAEVSPGL FSLQLNCRWA bmy_09859T0/1-444 YTCLATNMLG GRHRKVTTEL LVYSPPPSAP QCWAELSPGL FTLQLSCRWA ENSTTRP00000000618/1-510 YSCLATNMLG GRHRKVTTEL LVYSPPPSAP QCWAELSPGL FTLQLSCRWA 251 300 ENSP00000352172/1-540 GGYPDPDFLW IEEPGGVIVG KSKLGVEMLS ESQLSDGKKF KCVTSHIVGP ENSBTAP00000010329/1-471 GGYPDPDFLW TEEPGGVVVG TSKLGVEMLS QSQLSDGKKF KCVGSHIVGP bmy_09859T0/1-444 GGYPDPDLLW TEEPGGVAVG TSKLGVEMLN QPQLSDGKKF KCVGSHIVGP ENSTTRP00000000618/1-510 GGYPDPDLLW TEEPGGVVMG TSKLGVEMLN QPQLLDGKKF KCVGSHIVGP 301 350 ENSP00000352172/1-540 ESGASCMVQI RGPSLLSEPM KTCFTGGNVT LTCQVSGAYP PAKILWLRNL ENSBTAP00000010329/1-471 ELGASCVVQI RSPSLLSEPM KTCFVGGSVT LTCQVSGAYP PAKIMWLRNL bmy_09859T0/1-444 ELGASCVVQI RSPSLLSEPM KTCFVGGNVT LTCEVSGAYP PAKILWLSNL ENSTTRP00000000618/1-510 ELGASCVVQI RSPSLLSEPM KTCFVGGNVT LTCEVSGAYP PAKILWLSNL 351 400 ENSP00000352172/1-540 TQPEVIIQPS SRHLITQDGQ NSTLTIHNCS QDLDEGYYIC RADSPVGVRE ENSBTAP00000010329/1-471 TQPKVVIQPS GHHLITQSGQ SSTLTIRNCS QDLDEGYYVC RAENAVGVRE bmy_09859T0/1-444 TQPEVVIQPS GHHLITQSGQ SSTLTIRNCS QDLDEGYYVC RAENPVGVRE ENSTTRP00000000618/1-510 TQPEVIIQPS SHHLITQSGQ SSTLTIRNCS QDLDEGYYVC RAENPVGVRE 401 450 ENSP00000352172/1-540 MEIWLSVKEP LNIGGIVGTI VSLLLLGLAI ISGLLLHYSP VFCWKVG--- ENSBTAP00000010329/1-471 VDIWLSVKEP LNIGGIVATV VSLLLLGLAI ITGLLLYYSP VFCWKG---- bmy_09859T0/1-444 VDIWLSVKEP VNIGGIVGTI VSLLLLGLAI ISGLLLYYSP VFCWKGKGFP ENSTTRP00000000618/1-510 VDIWLSVKEP VNIGGIVGTI VSLLLLGLAI ISGLLLYYSP VFCWKGG--- 451 500 ENSP00000352172/1-540 ---------- ---------- --NTSRGQNM DDVMVLVDSE EEEEEEEEEE ENSBTAP00000010329/1-471 ---------- ---------- --STFRRQDM GDVMVLVDS- --EEEEMEEE bmy_09859T0/1-444 ERRKHFQGEA EDFTWALNNE KVEEFQRQDM GDVMVLVDS- --EEEEVEEE ENSTTRP00000000618/1-510 ---------- ---------- --REIRRQDM GDVMVLVDS- --EEEEVEEE 501 550 ENSP00000352172/1-540 EDAAVGEQEG AREREELPKE IPKQDHIHRV TALVNGNIEQ MGNGFQDLQD ENSBTAP00000010329/1-471 EDAAE----- ---------- ---------- ---------- ---------- bmy_09859T0/1-444 EDAAEEEEEE ASERDESPKE VTKYGHIHRV TALVNGNVDR MANGLQALQD ENSTTRP00000000618/1-510 EDAAEEEEEE ASERDESPKE VTKYGHIHRV TALVNGNVDR MANGLQALQD 551 600 ENSP00000352172/1-540 DSSEEQSDIV QEEDRPV ENSBTAP00000010329/1-471 ---------- ------- bmy_09859T0/1-444 DSSEQQSDII QEEDRPV ENSTTRP00000000618/1-510 DSSEQQSDII QEEDRPV