KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:45 2014 Check: 00 .. Name: ENSTTRP00000002140/1-919 Len: 942 Check: 2502 Weight: 1.00 Name: ENSP00000266041/1-930 Len: 942 Check: 4828 Weight: 1.00 Name: ENSBTAP00000010330/1-916 Len: 942 Check: 662 Weight: 1.00 Name: bmy_11574T0/1-806 Len: 942 Check: 7270 Weight: 1.00 Name: BACU005572/1-912 Len: 942 Check: 2497 Weight: 1.00 // 1 50 ENSTTRP00000002140/1-919 MKTPAPGRAC GVVLVLLS-L ATLQTLRAQK --NDIDIYSL TVDSRVSSRF ENSP00000266041/1-930 MKPPRPVRTC SKVLVLLSLL AIHQTTTAEK --NGIDIYSL TVDSRVSSRF ENSBTAP00000010330/1-916 MKTPAPGRIH SIVLVLLS-L AVLQTSKAQK VQNDIDIYSL TVDSKVSSRF bmy_11574T0/1-806 MKTPAPGRAC GIVLVLLS-L ATLQTLRAQK --NDIDIYSL TVDSKVSSRF BACU005572/1-912 MKTPAPGRAC GIVLVLLS-L ATLQTLRAQK --NDIDIYSL TVDSKVSSRF 51 100 ENSTTRP00000002140/1-919 AHTVVTSRVV NKASTLQEVT FQMELPKKAF ITNFSMIIDG VTYPGNIKEK ENSP00000266041/1-930 AHTVVTSRVV NRANTVQEAT FQMELPKKAF ITNFSMIIDG MTYPGIIKEK ENSBTAP00000010330/1-916 AHTVITSRVV NKADAVREAT FQMELPKKAF ITNFSMVIDG VTYPGNIKEK bmy_11574T0/1-806 AHTVVTSRVV NKASTLQEIT FQMELPKKAF ITNFSMIIDG VTYPGNIKEK BACU005572/1-912 AHTVVTSRVV NKASTLQEIT FQMELPKKAF ITNFSMIIDG VTYPGNIKEK 101 150 ENSTTRP00000002140/1-919 AAAQEQYSAA VERGESAGLV KATGRKTEQF QVSVSVAPAA KITFELVYEE ENSP00000266041/1-930 AEAQAQYSAA VAKGKSAGLV KATGRNMEQF QVSVSVAPNA KITFELVYEE ENSBTAP00000010330/1-916 AAAQEQYSAA VARGESAGLV RATGRKTEQF QVSVSVAPAA KVTFELVYEE bmy_11574T0/1-806 AAAQEQYSAA VARGESAGLV KATGRKTEQF QVSVSVAPAA KVTFELVYEE BACU005572/1-912 AAAQEQYSAA VARGESAGLV KATGRKTEQF QVSVSVAPAA KVTFELVYEE 151 200 ENSTTRP00000002140/1-919 LLVRHLGAYE LLLKVQPQQL VKHLQMDIYI FEPQGISFLE TESTFMTNEL ENSP00000266041/1-930 LLKRRLGVYE LLLKVRPQQL VKHLQMDIHI FEPQGISFLE TESTFMTNQL ENSBTAP00000010330/1-916 LLARHLGAYE LLLKVRPQQL VKHLQMDIHI FEPQGISFLE TESTFMTNKL bmy_11574T0/1-806 LLVRHLGAYE LLLKVQPQQL VKHLQMDIYI SEPQGISFLE TESTFMTNEL BACU005572/1-912 LLVRHLGAYE LLLKVQPQQL VKHLQMDIYI FEPQGISFLE TESTFMTNEL 201 250 ENSTTRP00000002140/1-919 AEALTTTQNK TKAHVRFRPT LSQQQKSPEQ QQDTVLDGNF IVRYDVDRTV ENSP00000266041/1-930 VDALTTWQNK TKAHIRFKPT LSQQQKSPE- QQETVLDGNL IIRYDVDRAI ENSBTAP00000010330/1-916 AEALTTSQNK TKAHVRFKPT LSQQQKYPE- KQDTVLDGSF IVRYDVDRPL bmy_11574T0/1-806 AEALTTSQNK TKAHVRFKPT LSQQQKSPEQ QQDTVLDGNF IVRYDVDRTV BACU005572/1-912 AEALITSQNK TKAHVRFKPT LSQQQKSPEQ QQDTVLDGNF IVRYDVDRTV 251 300 ENSTTRP00000002140/1-919 SGGSIQIENG YFVHYFAPEH LATIPKNVIF VIDKSGSMSG RKIQQXXXXX ENSP00000266041/1-930 SGGSIQIENG YFVHYFAPEG LTTMPKNVVF VIDKSGSMSG RKIQQTREAL ENSBTAP00000010330/1-916 SGGSIQIENG YFVHYFAPDS LSTIPKNVIF VIDKSGSMMG RKIKQTREAL bmy_11574T0/1-806 SGGSIQIENG YFVHYFAPEH LATIPKNVIF VIDKSGSMRG RKIQQTREAL BACU005572/1-912 SGGSIQIENG YFVHYFAPEH LATIPKNVIF VIDKSGSMRG RKIQQTREAL 301 350 ENSTTRP00000002140/1-919 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000266041/1-930 IKILDDLSPR DQFNLIVFST EATQWRPSLV PASAENVNKA RSFAAGIQAL ENSBTAP00000010330/1-916 IKILDDLSPH DQFDLISFSS EATTWKPLLV PASTENVNEA KSYATGIQAQ bmy_11574T0/1-806 IKILGDLGPR DQFNLISFSG EAAQWKPQLV PASAENVNEA KSYATGIQAQ BACU005572/1-912 LKILGDLGPR DQFNLISFSG EAAQWKPQLV PASAENVNEA KSYATGIQAQ 351 400 ENSTTRP00000002140/1-919 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000266041/1-930 GGTNINDAML MAVQLLDSSN QEERLPEGSV SLIILLTDGD PTVGETNPRS ENSBTAP00000010330/1-916 GGTNINDAML MAVQLLEKAN QEELLPEGSI TLIILLTDGD PTVGETNPLN bmy_11574T0/1-806 GGTNINDAIL MAVQLLERAN REELLPAGSV TLIILLTDGD PTAGETNPSR BACU005572/1-912 GGTNINDAIL MAVQLLERAN REELLPAGSV TLIILLTDGD PTAGETNPSR 401 450 ENSTTRP00000002140/1-919 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000266041/1-930 IQNNVREAVS GRYSLFCLGF GFDVSYAFLE KLALDNGGLA RRIHEDSDSA ENSBTAP00000010330/1-916 IQKNVRKAIN GQHSLFCLGF GFDVSYAFLE KMALENGGLA RRIYEDSDSA bmy_11574T0/1-806 IQKNVQEAID GQHSLFCLGF GFDVSYAFLE KLALDNGGLA RRIYEDSDSA BACU005572/1-912 IQKNVQEAID GQHSLFCLGF GFDVSYAFLE KLALDNGGLA RRIYEDSDSA 451 500 ENSTTRP00000002140/1-919 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000266041/1-930 LQLQDFYQEV ANPLLTAVTF EYPSNAVEEV TQNNFRLLFK GSEMVVAGKL ENSBTAP00000010330/1-916 LQLQDFYQEV ANPLMTSVAF EYPSNAVESV TQDTFRVFFK GSELVVAGKL bmy_11574T0/1-806 LQLQDFYQEV ANPLMTSVAF EYPSNAVEAV TQDAFRLFFK GSELV----- BACU005572/1-912 LQLQDFYQEV ANPLMTSVTF EYPSNAVEAV TQDAFRLFFK GSELVVAGKL 501 550 ENSTTRP00000002140/1-919 XXXXXXXXXX XXXXXXHMEN ITFVTESRVA EQEEAFWSPR YIFHSFMERL ENSP00000266041/1-930 QDRGPDVLTA TVSGKLPTQN ITFQTESSVA EQEAEFQSPK YIFHNFMERL ENSBTAP00000010330/1-916 REQSPDVLLA QIRGQLHREN ITYMMMSHVA EQEEMFRSPK YIFHSFIERL bmy_11574T0/1-806 ---------- ------HMEN ITFVTESRVA EQEEAFRSPR YIFHSFMERL BACU005572/1-912 RDQNPDVLSA KVRGQLHMEN VTFVTESRVA EQEEAFQSPR YIFHSFMERL 551 600 ENSTTRP00000002140/1-919 WAYLTIQQLL EQTVSMPDAE KQALEARALN LSLSYSFVTP LTSMVITKPE ENSP00000266041/1-930 WAYLTIQQLL EQTVSASDAD QQALRNQALN LSLAYSFVTP LTSMVVTKPD ENSBTAP00000010330/1-916 WAYLTIQQLL EQMVSALDAE KQALEARALS LSLSYSFVTP LTSMVITKPE bmy_11574T0/1-806 WAYLTIQQLL EQTVSTLDAE KQALEAQALN LSLSYSFVTP LTSMVITKPE BACU005572/1-912 WAYLTIQQLL EQTVSTLDAE KQALEARALN LSLSYSFVTP LTSMVITKPE 601 650 ENSTTRP00000002140/1-919 GQEQSQVAEK PVENENRHRN VHSGHTLFRY HSVGGKASRV -----SDPVF ENSP00000266041/1-930 DQEQSQVAEK PMEGESRNRN VHSGSTFFKY YLQGAKIPK- -----PEASF ENSBTAP00000010330/1-916 GQEQSQVAEK PVEDESRGSR VYLGPMRFG- HSVGDRTSRK PGGGLKLLNG bmy_11574T0/1-806 GQEQSQVAEK PVENGGKQ-- ---------- ---------- ---------- BACU005572/1-912 GQEQSQVAEK PVENENRHRN VHSGHTLFRY HSMGDRASRI TGGSSADPVF 651 700 ENSTTRP00000002140/1-919 STRRGWRGQA GVFDKLYNF- -----PTRLG PP---GPL-- HPHLPYHPTR ENSP00000266041/1-930 SPRRGWNRQA GAAGSRMNFR PGVLSSRQLG LP---GPPDV PDHAAYHPFR ENSBTAP00000010330/1-916 TPLFGPPGPP AAASPFHRM- -----TSRLV LPELMSPL-A PASAPS---- bmy_11574T0/1-806 TQERPLRNNH GS-------- ---------- ---------- ---------- BACU005572/1-912 SKRRGWRGQA GVFDKLYSF- -----PTRLG PP---GPL-H PPHLPY---- 701 750 ENSTTRP00000002140/1-919 HQA-LPASGL SATSFLD--- EHDMDLRIKE TTMASPHHAP IQPPSVILPL ENSP00000266041/1-930 RLAILPASAP PATSNPDPAV SRVMNMKIEE TTMTTQTPAP IQAPSAILPL ENSBTAP00000010330/1-916 ---------P --TSGPGGA- SHDTDFRIKG TTPTALPFAP VQAPSVILPL bmy_11574T0/1-806 ---------P TPRTTPA--- ---------- ------VPAP IQPPSIILPL BACU005572/1-912 ---------P FHRTTWGPTL PDVMS----Q TTTAAPHPAP IQPPSVILPL 751 800 ENSTTRP00000002140/1-919 PGRSVDRLCV DLKRSQGPTN LLSDPGQGIE VTGHYETEKG HFSWIEVTFE ENSP00000266041/1-930 PGQSVERLCV DPRHRQGPVN LLSDPEQGVE VTGQYEREKA GFSWIEVTFK ENSBTAP00000010330/1-916 PGQSVDRLCV DLRRPQELVN LLSDPDQGVE VTGHFETAKA RFSWIEVTFE bmy_11574T0/1-806 PGQSVDRLCV DLKRSQGPTN LLSDPGQGIE VTGHYETEKA HFSWIEVTFK BACU005572/1-912 PGQSVDRLCV DLKRSQGPTN LLSDPGQGIE VTGHYETEKA HFSWIEVTFK 801 850 ENSTTRP00000002140/1-919 KPQLQVRASP EHVVVTRNRR SSAYKWKKTL YSVMPGLKMT MDKAGLLLLS ENSP00000266041/1-930 NPLVWVHASP EHVVVTRNRR SSAYKWKETL FSVMPGLKMT MDKTGLLLLS ENSBTAP00000010330/1-916 NPQVQIHASP EHVVMTRNRR NTAYKWKETL YSVMPGLKVT MDKEGLLLLS bmy_11574T0/1-806 KPQLQVRASP EHVVVTRNRR SSAYKWKKTL YSVMPG---- ---------- BACU005572/1-912 KPQLQVRASP EHVVVTRNRR SSAYKWKKTL YSVMPGLKMT MDKAGLLLLS 851 900 ENSTTRP00000002140/1-919 SPDRVTIGLL SWDGPGAGLR LLLRDTDRFS SHINGTLGQF YQGVLWEPLA ENSP00000266041/1-930 DPDKVTIGLL FWDGRGEGLR LLLRDTDRFS SHVGGTLGQF YQEVLWGSPA ENSBTAP00000010330/1-916 RPDRVTIGLL FWDGPGKGLR LLLQNTDRFS SHVSGTLGQF YQDVLWGPLD bmy_11574T0/1-806 SPDTVTIGLL SWDGPGEGLR LLLRDTDRFS SHVSGTLGQF YQDVLWEPLA BACU005572/1-912 SPDRVTIGLL SWDGPGEGLR LLLRDTDRFS GHVSGSLGQF YQDVLWEPLA 901 950 ENSTTRP00000002140/1-919 AADDSKRTLK VQGHDHSATR ELKLDYQEGP PGTEISCWSV EL ENSP00000266041/1-930 ASDDGRRTLR VQGNDHSATR ERRLDYQEGP PGVEISCWSV EL ENSBTAP00000010330/1-916 TADDSKRTLK VQGRDYSATR ELKLDYQESP PGKEISCWSV EL bmy_11574T0/1-806 AADDSKRTLK VQGRDHSATR ELKLDYQEGP PGTEISCWSV EL BACU005572/1-912 AADDSKRTLK VQGHDHSATR ELKLDYQEGP PGTEISCWSV EL