KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:52 2014 Check: 00 .. Name: ENSBTAP00000010348/1-603 Len: 680 Check: 3906 Weight: 1.00 Name: ENSTTRP00000001062/1-485 Len: 680 Check: 9138 Weight: 1.00 Name: bmy_12553T0/1-678 Len: 680 Check: 9914 Weight: 1.00 Name: ENSP00000317379/1-669 Len: 680 Check: 1568 Weight: 1.00 Name: BACU003735/1-240 Len: 680 Check: 5923 Weight: 1.00 // 1 50 ENSBTAP00000010348/1-603 MMRLRGSAML RDLLLRPPAA ACAVLRRAQP LATLCRRPLG GGR--TGQVA ENSTTRP00000001062/1-485 ---------- ---------- ---------- ---------- ---------- bmy_12553T0/1-678 MMRLRGSAML RDLLLRPPAA ACAVLRRAQP LATLCRRPRG EGR--AGPAA ENSP00000317379/1-669 MMRLRGSGML RDLLLRSPAG VSATLRRAQP LVTLCRRPRG GGRPAAGPAA BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000010348/1-603 AARLYPWWGG GGRSAGPLTK GLSSSPSEIL QELGKGATQQ QQQQPP---- ENSTTRP00000001062/1-485 ---------- ---------- ---------- ---------- ---------- bmy_12553T0/1-678 AARLYPWWGG GGRPGGPLVR GLSSSPSEIL QELGKGGTQQ PQQQPPPPPQ ENSP00000317379/1-669 AARLHPWWGG GGWPAEPLAR GLSSSPSEIL QELGKGSTH- ---------- BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000010348/1-603 PQPGASPPAV PQAPGPKDGP GETDAFSNNE GKELVPSGEN KIKQGLLPSL ENSTTRP00000001062/1-485 ---------- ---------- ---------- ---------- KIKQGLLPSL bmy_12553T0/1-678 PQPGASPPAA PPASDPKDGL GETDGFGNSE GKELVASGEN KIKQGLLPSL ENSP00000317379/1-669 PQPGVSPPAA PAAPGPKDGP GETDAFGNSE GKELVASGEN KIKQGLLPSL BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000010348/1-603 EDLLFYTIAE GQEKIPVHKF ITALKSTGLR TSDPRLKECM DMLRLTLQTT ENSTTRP00000001062/1-485 EDLLFYTIAE GQEKIPVHKF ITALKSTGLR TSDPRLKECM DMLRLTLQTT bmy_12553T0/1-678 EDLLFYTIAE GQEKIPVHKF ITALKSTGLR TSDPRLKECM DMLRLTLQTT ENSP00000317379/1-669 EDLLFYTIAE GQEKIPVHKF ITALKSTGLR TSDPRLKECM DMLRLTLQTT BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000010348/1-603 SDGVMLDKDL FKKCVQSNIV LLTQAFRRKF VIPDFMSFTS HIDELYESAK ENSTTRP00000001062/1-485 SDGVMLDKDL FKKCVQSNIV -LTQAFRRKF VIPDFMSFTS HIDE-YESAK bmy_12553T0/1-678 SDGVMLDKDL FKKCVQSNIV LLTQAFRRKF VIPDFMSFTS HIDELYESAK ENSP00000317379/1-669 SDGVMLDKDL FKKCVQSNIV LLTQAFRRKF VIPDFMSFTS HIDELYESAK BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000010348/1-603 KQSGGKVADY IPQLAKFSPD LWGVSVCTVD GQRHSVGDTK VPFCLQSCVK ENSTTRP00000001062/1-485 KQSGGQVADY IPQLAKFSPD LWGVSVCTVD GQRHSIEDTK AP-CLQSCVK bmy_12553T0/1-678 KQSGGKVADY IPQLAKFSPD LWGVSVCTVD GQRHSIGDTK VPFCLQSCVK ENSP00000317379/1-669 KQSGGKVADY IPQLAKFSPD LWGVSVCTVD GQRHSTGDTK VPFCLQSCVK BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000010348/1-603 PLKYAIAVND LGTEYVHRYV GKEPSGLRFN KLFLNEDDKP HNPMVNAGAI ENSTTRP00000001062/1-485 PLKYAIAVND LGTEYVHRYV GKEPSGLRFN KLFLNEDDKP HNPMVNAGAI bmy_12553T0/1-678 PLKYAIAVND LGTEYVHRYV GKEPSGLRFN KLFLNEDDKP HNPMVNAGAI ENSP00000317379/1-669 PLKYAIAVND LGTEYVHRYV GKEPSGLRFN KLFLNEDDKP HNPMVNAGAI BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000010348/1-603 VVTSLIKQGV NNAEKFDYVM QFLNKMAGNE YVGFSNATFQ SERESGDRNF ENSTTRP00000001062/1-485 VVTSLIKQGV NNAEKFDYVM QFLNKMAGNE YVGFSNATFQ SERESGDRNF bmy_12553T0/1-678 VVTSLIKQGV NNAEKFDYVM QFLNKMAGNE YVGFNNATFQ SERESGDRNF ENSP00000317379/1-669 VVTSLIKQGV NNAEKFDYVM QFLNKMAGNE YVGFSNATFQ SERESGDRNF BACU003735/1-240 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000010348/1-603 AIGYYLKEKK CFPEGTDMVG ILDFYFQLCS IEVTCESASV MAATLANGGF ENSTTRP00000001062/1-485 AIGYYLKEKK CFPEGTDMVG ILDFYFQLCS IEVTCESASV MAATLANGGF bmy_12553T0/1-678 AIGYYLKEKK CFPEGTDMVG ILDFYFQLCS IEVTCESASV MAATLANGGF ENSP00000317379/1-669 AIGYYLKEKK CFPEGTDMVG ILDFYFQLCS IEVTCESASV MAATLANGGF BACU003735/1-240 ---------- ---------- ---------- ---------- MAATLANGGF 451 500 ENSBTAP00000010348/1-603 CPITGERVLS PEAVRNTLSL MHSCGMYDFS GQFAFHVGLP AKSGVAGGIL ENSTTRP00000001062/1-485 CPITGERVLS PEAVRNTLSL MHSCGMYDFS GQFAFHVGLP AKSGVAGGIL bmy_12553T0/1-678 CPITGERVLS PEAVRNTLSL MHSCGMYDFS GQFAFHVGLP AKSGVAGGIL ENSP00000317379/1-669 CPITGERVLS PEAVRNTLSL MHSCGMYDFS GQFAFHVGLP AKSGVAGGIL BACU003735/1-240 CPITGERVLS PEAVRNTLSL MHSCGMYDFS GQFAFHVGLP AKSGVAGGIL 501 550 ENSBTAP00000010348/1-603 LVVPNVMGMM CWSPPLDKMG NSVKGIHFCH DLVSLCNFHN YDNLRHFAKK ENSTTRP00000001062/1-485 LVVPNVMGMM CWSPPLDKMG NSVKGIHFCH DLVSLCNFHN YDNLRHFAKK bmy_12553T0/1-678 LVVPNVMGMM CWSPPLDKMG NSVKGIHFCH DLVSLCNFHN YDNLRHFAKK ENSP00000317379/1-669 LVVPNVMGMM CWSPPLDKMG NSVKGIHFCH DLVSLCNFHN YDNLRHFAKK BACU003735/1-240 LVVPNVMGMM CWSPPLDKMG NSVKGIHFCH DLVSLCNFHN YDNLRHFAKK 551 600 ENSBTAP00000010348/1-603 LDPRREGGDQ R-HSFGPLDY ESLQQEL-AL KETVWKKVSP ESNEDISTTV ENSTTRP00000001062/1-485 LDPRREGGDQ RVKSVINLLF AAYTGDVSAL RRFALSAMDM EQRDYDSRTA bmy_12553T0/1-678 LDPRREGGDQ RVKSVINLLF AAYTGDVSAL RRFALSAMDM EQRDYDSRTA ENSP00000317379/1-669 LDPRREGGDQ RVKSVINLLF AAYTGDVSAL RRFALSAMDM EQRDYDSRTA BACU003735/1-240 LDPRREGGDQ RVKSVINLLF AAYTGDVSAL RRFALSAMDM EQRDYDSRTA 601 650 ENSBTAP00000010348/1-603 VYRMESLGEK S--------- ---------- ---------- ---------- ENSTTRP00000001062/1-485 LHVAAAEGHV EVVKFLLEAC KVNPFPKD-- ---------- ---------- bmy_12553T0/1-678 LHVAAAEGHV EVVKFLLEAC KVNPFPKDRW NNTPMDEALH FGHHDVFKIL ENSP00000317379/1-669 LHVAAAEGHV EVVKFLLEAC KVNPFPKDRW NNTPMDEALH FGHHDVFKIL BACU003735/1-240 LHVAAAEGHV EVVKFLLEAC KVNPFPKDRW NNTPMDEALH FGHHDVFKIL 651 700 ENSBTAP00000010348/1-603 ---------- ---------- ---------- ENSTTRP00000001062/1-485 ---------- ---------- ---------- bmy_12553T0/1-678 QEYQVQYTPQ GDSDNGKENQ TVHKNLDGLL ENSP00000317379/1-669 QEYQVQYTPQ GDSDNGKENQ TVHKNLDGLL BACU003735/1-240 QEYQVQYTPQ GDSDNGKENQ TVHKNLDGLL