KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:54 2014 Check: 00 .. Name: ENSP00000348069/1-1177 Len: 1226 Check: 823 Weight: 1.00 Name: ENSTTRP00000014168/1-1171 Len: 1226 Check: 8496 Weight: 1.00 Name: ENSBTAP00000010372/1-1146 Len: 1226 Check: 5479 Weight: 1.00 Name: bmy_19337T0/1-1166 Len: 1226 Check: 688 Weight: 1.00 Name: BACU005271/1-1144 Len: 1226 Check: 7788 Weight: 1.00 // 1 50 ENSP00000348069/1-1177 ---------- ---------- ---------- ---------- ---MDEPPFS ENSTTRP00000014168/1-1171 ---------- ---------- ---------- ---------- ---MDEPHFS ENSBTAP00000010372/1-1146 ---------- ---------- ---------- ---------- ---MDEPPFN bmy_19337T0/1-1166 AAWEPSCRGT FRGRRASLRP GRDAKSRSGG GGPGGPPGGG DCAMDEPPFS BACU005271/1-1144 ---------- -------MSS PQRARRGVGE SQVGGLQGAL GSSSVARPFD 51 100 ENSP00000348069/1-1177 EAALEQALGE PCDLDAALLT DIEGEVGAGR GRANGLDAPR AGADRGAMDC ENSTTRP00000014168/1-1171 EAALEQALAE PSELDAALLT DIEGEVSART GRSR-LDPPK AGAGRGAMDC ENSBTAP00000010372/1-1146 EAALELALAE PCELDAALLT DI-------- ---------- ---------- bmy_19337T0/1-1166 EAALEQALAE PSELDAALLT DI-------- ---------- ---------- BACU005271/1-1144 ------APGR APDVTGVY-- ---------- ---------- ---------- 101 150 ENSP00000348069/1-1177 TFEDMLQLIN NQDSDFPGLF DPPYAGSGAG GTDPASPDTS SPGSLSPPPA ENSTTRP00000014168/1-1171 TFEDMLQLIN NQDSDFPGLF DPPYAGGGAG GTEPASPYAS SPGSLSPPPS ENSBTAP00000010372/1-1146 --EDMLQLIN NQDSEFPGLF DPPYAGGGAG TTDPASPDAS SPGSLSPPPS bmy_19337T0/1-1166 --EDMLQLIN NQDSDFPGLF EPPFAGGGAG GTDPASPDAS SPGSLSPPPS BACU005271/1-1144 ----MLQLIN NQDSDFPGLF EPPFAGGGAG GTDPASPDAS SPGSLSPPPS 151 200 ENSP00000348069/1-1177 TLSSSLEAFL SGPQAAPSPL SPPQPAPTPL KMYPSMPAFS PGPGIKEESV ENSTTRP00000014168/1-1171 TMSSPLEGFL GGTKATTPPL SPPQPAPTPL KMYPSVPAFS AGPAIKEEPA ENSBTAP00000010372/1-1146 TMSSSLEGFL GVTKATPPPL SPPQPAPTPL KIYPSVPAFS PVPGIKEEPA bmy_19337T0/1-1166 TMSSPLEGFL GGTKATTPPL SPPQPAPTPL KMYPSVPAFS AGPAIKEEPA BACU005271/1-1144 TMSSPLEGFL GGTKATTPPL SPPQPAPTPL KMYPSVPAFS AGPAIKEEPA 201 250 ENSP00000348069/1-1177 PLSILQTPTP QPLPGALLPQ SFPAPAPPQF SSTPVLGYPS PPGGFSTGSP ENSTTRP00000014168/1-1171 PQTTL----- QPLPGALLPQ RLPAPAPPQF SSAPVLGYPS PPGGFSTVTP ENSBTAP00000010372/1-1146 PLTVLQPTTP QPLPGALLPQ SVAATTPPQF SSAPIVGYPS PPGGF-TGTP bmy_19337T0/1-1166 PLTTL----- QPLPGALLPQ RLPAPAPPQF SSAPVLGYPS PPGGFST--- BACU005271/1-1144 PLTTL----- QPLPGALLPQ RLPAPAPPQF SSAPVLGYPS PPGGFSTGTP 251 300 ENSP00000348069/1-1177 PGNTQQPLPG LPLASPPGVP PVSLHTQVQS VVPQQLLTVT AAPTAAPVTT ENSTTRP00000014168/1-1171 PGSTAQSLPG LPLAALPGVP PVSLHNQVQS AAPQQLLTAT ATPTVAPGTT ENSBTAP00000010372/1-1146 PGSSSQSLAG LPLASLPGVP PVSLHSQVQS AAPQQLLTAT ATPTVAPGAT bmy_19337T0/1-1166 ---------- -------GVP PVSLHNQVQS AAPQQLLTAT ATPTVAPGTT BACU005271/1-1144 PGSTAQSLPG LPLAALPGVP PVSLHSQVQS AAPQQLLTAT AAPTAAPGTA 301 350 ENSP00000348069/1-1177 TVTSQIQQVP VLLQPHFIKA DSLLLTAMKT D-GATVKAAG LSPLVSGTTV ENSTTRP00000014168/1-1171 TVTSQVQQVP VRLQPHFXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000010372/1-1146 AVTSQIQQVP VLLQPHFIKA DSLLLTTVKT DVGAPLKAAG IRSLGPGTAV bmy_19337T0/1-1166 TVTSQVQQVP VLLQPHFIKA DSLLLTTVKT DVGAPMKAAG ISSLAPGMAV BACU005271/1-1144 TVTSQVQQVP VLLQPHFIKA DSLLLTTVKT DVGAPMKAAG ISSLAPGMAV 351 400 ENSP00000348069/1-1177 QTGPLPTLVS GGTILATVPL VVDAEKLPIN RLAAGSKAPA SAQSRGEK-- ENSTTRP00000014168/1-1171 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ENSBTAP00000010372/1-1146 QAAPLQTLVS GGAILATVPL VVDTDKLPIN RL-ASGKAPG SAQSRGEK-- bmy_19337T0/1-1166 QAAPLQTLVS GGTILATVPL VVDADKLPIN RLAASGKAPG SAQSRGEK-- BACU005271/1-1144 QAAPLQTLVS GGTILATVPL VVDADKLPIN RLAAGGKAPG SAQSRAAHLS 401 450 ENSP00000348069/1-1177 -RTAHNAIEK RYRSSINDKI IELKDLVVGT EAKLNKSAVL RKAIDYIRFL ENSTTRP00000014168/1-1171 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLNKSAVL RKAIDYIRFL ENSBTAP00000010372/1-1146 -RTAHNAIEK RYRSSINDKI VELKDLVVGT EAKLNKSAVL RKAIDYIRFL bmy_19337T0/1-1166 -RTAHNAIEK RYRSSINDKI VELKDLVVGT EAKLNKSAVL RKAIDYIRFL BACU005271/1-1144 GLTATCALSP SYR------- ---------- -LQLNKSAVL RKAIDYIRFL 451 500 ENSP00000348069/1-1177 QHSNQKLKQE NLSLRTAVHK SKSLKDLVSA CGSGGNTDVL MEGVKTEVED ENSTTRP00000014168/1-1171 QQGNQRLKQE NLNLRTAAHK SKSLKDLVSA CSSGGHTDVP MEGEKPEVVD ENSBTAP00000010372/1-1146 QHSNQKLKQE NLSLRTAVHK SKSLKDLVSA CGSGGSTDVP MEGMKPEVVD bmy_19337T0/1-1166 QQGNQRLKQE NLSLRTAAHK SKSLKDLVSA CGSGGHTDVP MEGEKPEVVD BACU005271/1-1144 QQGNQRLKQE NLSLRTAAHK SKCLKDLVSA CGSGGHTDVP MEGEKPEVVD 501 550 ENSP00000348069/1-1177 TLTPPPSDAG SPFQSSPLSL GSRGSGSGGS GSDSEPDSPV FEDSKAKPEQ ENSTTRP00000014168/1-1171 TLSPPPSDAG SPFQSSPLSL GSRGSSSGGS GSDSEPDSPV FEDSQVKPEQ ENSBTAP00000010372/1-1146 TLSPPPSDAG SPSQSSPLSL GSRGSSSGGS GSDSEPDSPV FEDGQVNPEP bmy_19337T0/1-1166 TLSPPPSDAG SPFQRSPLSL GSRGSSSGGS GSDSEPDSPV FEDSQVKPEQ BACU005271/1-1144 TLSPPPSDAG SPFQRSPLSL GSRGSSSGGS GSDSEPDSPV FENSQVKPEQ 551 600 ENSP00000348069/1-1177 RPSLHSRGML DRSRLALCTL VFLCLSCNPL ASLLGARGLP SPSDTTSVYH ENSTTRP00000014168/1-1171 LPPPHSRGML DRSRLALCVL VFLCVSCNPL ASLLGSRVPA GPSDATSVYH ENSBTAP00000010372/1-1146 LPAPHSQGML DRSRLALCAL VFLCLSCNPL ASLLGSRGPA GPSDTTSINH bmy_19337T0/1-1166 LPPPHSRGML DRSRLALCVL VFLCLSCNPL ASLLGSRGPA GPSDATSVYH BACU005271/1-1144 LPPPHSRGML DRSRLALCVL VFLCLSCNPL ASLLGSRGPA GPSDATSVYH 601 650 ENSP00000348069/1-1177 SPGRNVLGTE SRDGPGWAQW LLPPVVWLLN GLLVLVSLVL LFVYGEPVTR ENSTTRP00000014168/1-1171 GPGRSMLGAE GRDSLGWAPW LLPSLVWLMN GLLVLSSLAL LFVYGEPVTR ENSBTAP00000010372/1-1146 GPRRSMLGAE GRDGPGWAPW LLPPLVWLMN GLLVLFSLAL LFVYGEPVTR bmy_19337T0/1-1166 GPGRSMLGAE GRDGIGWAPW LLPPLLWLMN GLLVLFSLTL LFVYGEPVTR BACU005271/1-1144 GPGRSMLGAE GRDGSGWAPW LLPPLVWSMN GLLVLFSLAL LFVYGEPVTR 651 700 ENSP00000348069/1-1177 PHSGPAVYFW RHRKQADLDL ARGDFAQAAQ QLWLALRALG RPLPTSHLDL ENSTTRP00000014168/1-1171 PHSGPAVHFW RHRKQADLDL ARGDFAQAAQ QLWLALRALG RPLPTSHLDL ENSBTAP00000010372/1-1146 PHSCPAVHFW RHRKQADLDL ARGDFAQAAQ QLWLALRALG RPLPTSHLDL bmy_19337T0/1-1166 PHSGPAVHFW RHRKQADLDL ARGDFAQASQ QLWLALRALG RPLPTSHLDL BACU005271/1-1144 PHSGPAVHFW RHRKQADLDL ARGDFAQAAQ QLWLALRALG RPLPTSHLDL 701 750 ENSP00000348069/1-1177 ACSLLWNLIR HLLQRLWVGR WLAGRAGGLQ QDCALRVDAS ASARDAALVY ENSTTRP00000014168/1-1171 ACSLLWGLIR HLLQHLWVGR WLAGRAGGLR RDGALQVDAR TSARDAALVY ENSBTAP00000010372/1-1146 ACSLLWSLIR HLLQRLWVGR WLAGWAGGLR RDRALQADAR TSARDAALVY bmy_19337T0/1-1166 ACSLLWSLIR HLLQHLWVGR WLAGRAGGLR RDGALQVDAR TSARDAALVY BACU005271/1-1144 ACSLLWSLIR HLLQHLWVGR WLAGRAGGLR RDGALQVDAR TSARDAALVY 751 800 ENSP00000348069/1-1177 HKLHQLHTMG KHTGGHLTAT NLALSALNLA ECAGDAVSVA TLAEIYVAAA ENSTTRP00000014168/1-1171 HKLHQLHTMG KYSGGHLAAA NLALSALNLA ECAGEAMSVA TLAEIYVATA ENSBTAP00000010372/1-1146 HKLHQLHTMG KYSGGHLAAA NLALSALNLA ECAGDAVSVA TLAEIYVAAA bmy_19337T0/1-1166 HKLHQLHTMG KYSGGHLAAA NLALSALNLA ECAGEAMSVA TLAEIYVATA BACU005271/1-1144 HKLHQLHTMG KYSGGHLAAA NLALSALNLA ECAGEAVSVA TLAEIYVATA 801 850 ENSP00000348069/1-1177 LRVKTSLPRA LHFLTRFFLS SARQACLAQS GSVPPAMQWL CHPVGHRFFV ENSTTRP00000014168/1-1171 LRVKTSLPRA LHFLTRFFLS SARQASLAQS GSVPLAMQWL CHPAGHRFFV ENSBTAP00000010372/1-1146 LRVKASLPRA LHFLTRFFLS SARQACLAQS GSVPLAMQWL CHPVGHRFFV bmy_19337T0/1-1166 LRVKTSLPRA LHFLTRFFLS SARQASLAQS GSVPLAMQWL CHPMGHRFFV BACU005271/1-1144 LRVKTSLPRA LHFLTRFFLS SARQASLAQS GSVPLAMQWL CHPMGHRFFV 851 900 ENSP00000348069/1-1177 DGDWSVLSTP WESLYSLAGN PVDPLAQVTQ LFREHLLERA LNCVTQPNPS ENSTTRP00000014168/1-1171 DGDWAVCSAP RHSLYSVAGD PVDPLAHVAQ LFREHLLERA LHCLAQPSPG ENSBTAP00000010372/1-1146 DGNWALCSAP RDSLYSVAGN PVDPLAQVTQ LFREHLLERA LNCVAQPSPS bmy_19337T0/1-1166 DGDWAVCSAP RDSLYSMAGS PVDPLAHVTQ LFREHLLERA LHCLAQPSPG BACU005271/1-1144 DGDWAVCTAP RDSLYSTAGS PVDPLAHVTQ LFREHLLERA LHCLAEPSPG 901 950 ENSP00000348069/1-1177 PGSADGDKEF SDALGYLQLL NSCSDAAGAP AYSFSISSSM ATTTGVDPVA ENSTTRP00000014168/1-1171 PGSADGDREF SDALGYLQLL NSCSDVAGAP ACSFSIGSGM AATAGTDPVA ENSBTAP00000010372/1-1146 PGSAEGDKEF SDALGYLQLL NSCSDVAGAP TCSFSISSSM AATPGTDPVA bmy_19337T0/1-1166 PGSADGDREF SDALGYLQLL NSCSDVAGAP ACSFSIGSSM AATAGTDPVA BACU005271/1-1144 PGSADGDREF SDALGYLQLL NSCSDVAGAP ACSFSIGSSM AATAGTDPVA 951 1000 ENSP00000348069/1-1177 KWWASLTAVV IHWLRRDEEA AERLCPLVEH LPRVLQESER PLPRAALHSF ENSTTRP00000014168/1-1171 KWWASLTAVV THWLRRDEAA AERLYPLVEH LPRALQESER PLPRAALHTF ENSBTAP00000010372/1-1146 KWWASLTAVV THWLRRDEEA AERLYPLVEH LPRALQESEK PLPRAALHSF bmy_19337T0/1-1166 KWWASLTAVV THWLRRDEAA AERLYPLVEH LPRALQESER PLPRAALHTF BACU005271/1-1144 KWWASLTAVV THWLRRDEAA AERLYPLVEH LPRALQESER PLPRAALHTF 1001 1050 ENSP00000348069/1-1177 KAARALLGCA KAESGPASLT ICEKASGYLQ DSLATTPASS SIDKAVQLFL ENSTTRP00000014168/1-1171 KAARALLGRG KAESGPASLA MCEKASGYLQ DSLAVTPAGS SIDKVMQLLL ENSBTAP00000010372/1-1146 KAARTILGRG KAESGPASLA MCEKASGYLQ DSLATTPADS SIDKALQLLL bmy_19337T0/1-1166 KAARALLGRG KAESGPASLA VCEKASGYLQ DSLAATPAGS SIDKVMQLLL BACU005271/1-1144 KAARALLGRG KAESGPASLA MCEKASGYLQ DSLAATPAGS SIDKVMQLLL 1051 1100 ENSP00000348069/1-1177 CDLLLVVRTS LWRQQQPPAP APAAQGTSSR PQASALELRG FQRDLSSLRR ENSTTRP00000014168/1-1171 CDLLLGARTS LWQRQKPPAP SQASPGPGSG AQASALELRG FQRDLSGLRR ENSBTAP00000010372/1-1146 CDLLLVARTS LWQRQKLPAP TQASQGPGGG AQASALELRG FQRDLSGLRR bmy_19337T0/1-1166 CDLLLVARTS LWQRQKPPAP SQASPGPGSG AQASALELRG FQRDLSGLRR BACU005271/1-1144 CDLLLVARTS LWQRQKPPAP SQASPGPGSG AQASALELRG FQRDLSGLRR 1101 1150 ENSP00000348069/1-1177 LAQSFRPAMR RVFLHEATAR LMAGASPTRT HQLLDRSLRR RAGPGGKGGA ENSTTRP00000014168/1-1171 LAQSFRPAMR RVFLHEATAR LMAGASPART HQLLDRSLRR RAGPCGKGGT ENSBTAP00000010372/1-1146 LAQNVRPAMR RVFLHEATAR LMAGASPART HQLLDRSLRR RVGPCKGGAV bmy_19337T0/1-1166 LAQSFRPAMR RVFLHEATAR LMAGASPART HQLLDRSLRR RAGPCGKGGT BACU005271/1-1144 LAQSFRPAMR RVFLHEATAR LMAGASPART HQLLDRSLRR RAGPCGKGGT 1151 1200 ENSP00000348069/1-1177 VAEL--EPRP TRREHAEALL LASCYLPPGF LSAPGQRVGM LAEAARTLEK ENSTTRP00000014168/1-1171 AAEL--EPRP TRREHAEALL LASCYLPPGF LSAPGQRVGM LAEAARTLEK ENSBTAP00000010372/1-1146 AAEL--ESRP TRREQAEALL LASCYLPPGF LSAPGQRVGM LAEAARTLEK bmy_19337T0/1-1166 AAEL--EPRP TRREHAEALL LASCYLPPGF LSAPGQRVGM LAEAARTLEK BACU005271/1-1144 AAELEPEPRP TRREHAEALL LASCYLPPGF LSAPGQRVGM LAEAARTLEK 1201 1250 ENSP00000348069/1-1177 LGDRRLLHDC QQMLMRLGGG TTVTSS ENSTTRP00000014168/1-1171 LGDRRLLHDC QQMLMRLGGG TTVTSS ENSBTAP00000010372/1-1146 LGDRRLLHDC QQMLMRLGGG TTVTSS bmy_19337T0/1-1166 LGDRRLLHDC QQMLMRLGGG TTVTSS BACU005271/1-1144 LGDRRLLHDC QQMLMRLGGG TTVTSS