KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:55 2014 Check: 00 .. Name: ENSBTAP00000010381/1-448 Len: 456 Check: 4856 Weight: 1.00 Name: bmy_22469T0/1-229 Len: 456 Check: 5436 Weight: 1.00 Name: ENSP00000262288/1-452 Len: 456 Check: 1793 Weight: 1.00 Name: BACU006274/1-443 Len: 456 Check: 3851 Weight: 1.00 Name: ENSTTRP00000011214/1-426 Len: 456 Check: 9611 Weight: 1.00 // 1 50 ENSBTAP00000010381/1-448 MELAPRNCPV P----LLLLL LGLSTGAVIS QPPEDSKEVW GYVTVRKDAH bmy_22469T0/1-229 ---------- ---------- ---------- ---------- ---------- ENSP00000262288/1-452 MELALRRSPV PRWLLLLPLL LGLNAGAVID WPTEEGKEVW DYVTVRKDAY BACU006274/1-443 MELAPRSCCP R----LLLLL LGLSAGAVIS WPIKEGKEVW DYVTVRKDAH ENSTTRP00000011214/1-426 ---------- ---------- ------AVIS WPTEEGKEVW DYVTVRKDAH 51 100 ENSBTAP00000010381/1-448 MFWWLYYATS SHKNFSELPL IMWLQGGPGG SSTGFGNFEE IGPLDRNLQP bmy_22469T0/1-229 ---------- ---------- ---------- ---------- ---------- ENSP00000262288/1-452 MFWWLYYATN SCKNFSELPL VMWLQGGPGG SSTGFGNFEE IGPLDSDLKP BACU006274/1-443 MFWWLYYATS PSKNFSELPL VMWLQGGPGG SSTGFGNFEE IGPLDRELKP ENSTTRP00000011214/1-426 MFWWLYYATS PSKNFSELPL VMWLQGGPGG SSTGFGNFEE IGPLDRDLKP 101 150 ENSBTAP00000010381/1-448 RNTTWLQSAS LLFVDNPVGA GFSYVNKTDA YARDLATVVS DMIFLLKSFF bmy_22469T0/1-229 ---------- ---------- ---------- ---------- ---------- ENSP00000262288/1-452 RKTTWLQAAS LLFVDNPVGT GFSYVNGSGA YAKDLAMVAS DMMVLLKTFF BACU006274/1-443 RRTTWLQSAS LLFVDNPVGT GFSYVNKSDV YTKDLAMVAS DMIVLLKTFF ENSTTRP00000011214/1-426 RRTTWLQSAS LLFVDNPVGT GFSYVNKSDA YTKDLAMVAS DMMVLLKTFF 151 200 ENSBTAP00000010381/1-448 DFHKEFERIP FYIFSESYGG KMAAGIALEL YKAVQQKTIQ CNFAGVALGD bmy_22469T0/1-229 ---------- ---------- ---------- --AIQQGTIQ CNFAGVALGD ENSP00000262288/1-452 SCHKEFQTVP FYIFSESYGG KMAAGIGLEL YKAIQRGTIK CNFAGVALGD BACU006274/1-443 ECHKEFQTIP FYIFSESYGG KMAAGIALEL HKAIQQGTIQ CNFAGVALGD ENSTTRP00000011214/1-426 ECHKEFQTIP FYIFSESYGG KMAAGIALEL YKAIQQGTIQ CNFAGVALGD 201 250 ENSBTAP00000010381/1-448 AWISPIDSVL SWGPYLYSVS LLDDQGLAEV SNVAEEVLDA LSKELYQEAT bmy_22469T0/1-229 SWISPI---- ---------- -----GLAEV SRVAEQVLDA INKRLYKEAT ENSP00000262288/1-452 SWISPVDSVL SWGPYLYSMS LLEDKGLAEV SKVAEQVLNA VNKGLYREAT BACU006274/1-443 SWISPIDSVL SWGPYLYSMS LLDDRGLAEV SQVAEQVLDA VNKRLYKEAT ENSTTRP00000011214/1-426 SWISPIDSVL SWGPYLYSMS LLDNQGLAEV SRVAEQVLDA INKRLYEEAT 251 300 ENSBTAP00000010381/1-448 RLWEKAEMVI EQNTDGVNFY NILTKSSSVS RVVSNLEFTQ KHLVHLFQRH bmy_22469T0/1-229 ELWGKAEMVI EQNTDGVNFY NILTKTSPXS TVKSSLEFTQ SHLGS----- ENSP00000262288/1-452 ELWGKAEMII EQNTDGVNFY NILTKSTPTS TMESSLEFTQ SHLVCLCQRH BACU006274/1-443 ELWGKAEMVI EQNTDGVNFY NILTKTSPMS TLKSSLEFTQ SHLVHLFQRH ENSTTRP00000011214/1-426 ELWGKAEMVI EQNTDGVNFY NILTKTSPTS TTKSSLEFTQ SHIVHLFQRH 301 350 ENSBTAP00000010381/1-448 VRQLQQDPLS QLMNGPIRKK LRIIPEDCIW GGQAPIVFLN MEGDFMKPVI bmy_22469T0/1-229 ---------- --------KL LPLSASPCT- -GQASSVFLN MEGDFMKPVI ENSP00000262288/1-452 VRHLQRDALS QLMNGPIRKK LKIIPEDQSW GGQATNVFVN MEEDFMKPVI BACU006274/1-443 VRHLQQDALS QLMNGPIRKK LKIIPEDCSW GGQASSVFLN MEGDFMKPVI ENSTTRP00000011214/1-426 VRHLQQDALS QLMNGPIRKK LKIIPEDCSW GGQAASVFLN MKGDFMKPVI 351 400 ENSBTAP00000010381/1-448 SIVDELLEAG VSVTVYNGQL DLIVDTMGQE NWMRKLKWKE LPKFRQLKWK bmy_22469T0/1-229 SIVDELLEAG VNVTVYNGQL DLIVDTMGQE AWVRKLKWAE LPKFSQLKWK ENSP00000262288/1-452 SIVDELLEAG INVTVYNGQL DLIVDTMGQE AWVRKLKWPE LPKFSQLKWK BACU006274/1-443 SIVDELLEAG VNVTVYNGQL DLIVDTMGQE AWVRKLKWAE LPKFSQLKWK ENSTTRP00000011214/1-426 SIVDELLEAG VNVTVYNGQL DLIVDTMGQE AWVRKLKWAE LPKFSQLKWK 401 450 ENSBTAP00000010381/1-448 PLHSDPRSSE TSAFVKSYKN LAFYWILRAG HMVPS----D QPDMALKMMR bmy_22469T0/1-229 PLHRDPKTSE TSAFVKTHKN LAFYWILRAG HMGTCRLLVG DSDTPGDGRN ENSP00000262288/1-452 ALYSDPKSLE TSAFVKSYKN LAFYWILKAG HMVPS----D QGDMALKMMR BACU006274/1-443 PLHSDPKTSE TSAFVKSHKN LAFYWILRAG HMVLTFLIGS DWDFTIQ--- ENSTTRP00000011214/1-426 PLHSDPETSE TSAFVKSHKN LAFYWILRAG HMVPS----D QGDMALQMMR 451 500 ENSBTAP00000010381/1-448 LVTQQE bmy_22469T0/1-229 AKVNR- ENSP00000262288/1-452 LVTQQE BACU006274/1-443 ------ ENSTTRP00000011214/1-426 LVTQQE