KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:56 2014 Check: 00 .. Name: ENSTTRP00000005223/1-421 Len: 570 Check: 5480 Weight: 1.00 Name: ENSP00000310998/1-515 Len: 570 Check: 6002 Weight: 1.00 Name: ENSBTAP00000010385/1-526 Len: 570 Check: 6035 Weight: 1.00 Name: bmy_14655T0/1-570 Len: 570 Check: 2488 Weight: 1.00 Name: BACU009144/1-545 Len: 570 Check: 4051 Weight: 1.00 // 1 50 ENSTTRP00000005223/1-421 ---------- ---------- ---------- ---------- ---------- ENSP00000310998/1-515 MATSTGRWLL LRLALFGFLW EASGGLDSG- ASRDDDLLLP YPRARARLPR ENSBTAP00000010385/1-526 MASSMGRFLL FFIALRGFLL EASGDFGSG- ASRDDDVLLP YSRARARLAR bmy_14655T0/1-570 MAASMGRCLL VFISLRGFLG EASGDLGSGR ASRDDDLLLP YSRPRARSAR BACU009144/1-545 MAASMGRCLL VFISLRGFLG EASGDLGSG- ASRDDDLLLP YSRARARSAR 51 100 ENSTTRP00000005223/1-421 ---------- ---------- ---------- ---------- -----TRAAE ENSP00000310998/1-515 DCTRVRAGNR EHESWPPPPA TPGAGGLAVR TFVSHFRDRA VAGHLTRAVE ENSBTAP00000010385/1-526 DCTRVHAGRL EHESWPPAAQ TAGAHRPSVR TFVSYFADRA VPGHLTRAPE bmy_14655T0/1-570 DCTRVRVGSR EHESWPPSPS NPGARGPAVR IFVSHFADRA VAGHLTRAAE BACU009144/1-545 DCTRVRAGSR EHESWPPSPS NPGARGPTVR IFVSHFADRA VAGHLTRAAE 101 150 ENSTTRP00000005223/1-421 PVRTFSVLEP GGPGGCASRR RATVEETARA AGCSVAQNGG FFRMDTGECL ENSP00000310998/1-515 PLRTFSVLEP GGPGGCAARR RATVEETARA ADCRVAQNGG FFRMNSGECL ENSBTAP00000010385/1-526 PLRTFSVLEP GGPGGCASKR RATVEETARP SGCTVAQNGG FFRMETGECL bmy_14655T0/1-570 PLRTFSVLEP GEPGGCASRR RATVEETARA AGCSVAQNGG FFRMDTGECL BACU009144/1-545 PLRTFSVLEP GE-------- ---------- ------QNGG FFRMDTGECL 151 200 ENSTTRP00000005223/1-421 GNVVSDGRRV SSAGGLQNAQ FGIRRDGTLV TGXXXXXXXX XXXXXXXXXX ENSP00000310998/1-515 GNVVSDERRV SSSGGLQNAQ FGIRRDGTLV TGYLSEEEVL DTENPFVQLL ENSBTAP00000010385/1-526 GNVVSGGRRV SSAGGLQNAQ FGIRRDGTLV TGYLSEEEVL DTENPFVQLL bmy_14655T0/1-570 GNVVSDGRRV SSAGGLQNAQ FGIRRDGTLV TGYLSEEEVL DTENPFVQLL BACU009144/1-545 GNVVSDGRRV SSAGGLQNAQ FGIRRDGTLV TGYLSEEEVL DTENPFVQLL 201 250 ENSTTRP00000005223/1-421 XXXXXXXXXX XXXXXXXXXX EYDEMW-VSS FSKFVNVMSA RTAVGHDREG ENSP00000310998/1-515 SGVVWLIRNG SIYINESQAT ECDETQETGS FSKFVNVISA RTAIGHDRKG ENSBTAP00000010385/1-526 SGVVWLIRNG SIYINESQAA ECEETQETGS FNRFVNVISA RTAVGHDRKG bmy_14655T0/1-570 SGVVWLIRNG SIYINESQAA ECDETQETGS FSKFVNVMSA RTAVGHDREG BACU009144/1-545 SGVVWLIRNG SIYINESQAA ECDETQETGS FSKFVNVMSA RTAVGHDREG 251 300 ENSTTRP00000005223/1-421 QLVLFHVDGQ TEQRGINLWE MAEFLLKQNV VNAINLDGGG SATFVLNGTL ENSP00000310998/1-515 QLVLFHADGQ TEQRGINLWE MAEFLLKQDV VNAINLDGGG SATFVLNGTL ENSBTAP00000010385/1-526 QLVLLHVDGQ TEQRGINLWE MAEFLLKQDV VNAINLDGGG SATFVLNGTL bmy_14655T0/1-570 QLVLFHVDGQ TEQRGINLWE MAEFLLKQNV VNAINLDGGG SATFVLNGTL BACU009144/1-545 QLVLFHVDGQ TEQRGINLWE LVEFLLKQNV VNAINLDGGG SATFVLNGTL 301 350 ENSTTRP00000005223/1-421 ASYPSDHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000310998/1-515 ASYPSDHCQD NMWRCPRQVS TVVCVHEPRC QPPDCHGHGT CVDGHCQCTG ENSBTAP00000010385/1-526 ASYPSDHCQD NMWRCPRRVS TVVCVHEPRC QPPDCSGHGT CMEGRCQCTG bmy_14655T0/1-570 ASYPSDHCQD NMWRCPRRVS TVVCVHEPRC QPSDCNGHGT CVEGRCQCTG BACU009144/1-545 ASYPSDHCQD NMWRCPRRVS TVVCVHEPRC QPSDCNGHGT CVEGRCQCTG 351 400 ENSTTRP00000005223/1-421 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXC------ ENSP00000310998/1-515 HFWRGPGCDE LDCGPSNCSQ HGLCTETGCR CDAGWTGSNC SEEC------ ENSBTAP00000010385/1-526 HFWRGAACDK LDCGPANCSQ HGLCTETGCR CEAGWTGSNC SEEC------ bmy_14655T0/1-570 RFWRGAACSE LDCGPANCSQ HGLCTETGCR CEAGWTGSNC SEACTNGSFG BACU009144/1-545 RFWRGAACSE LDCGPANCSQ HGLCTETGCR CKAGWTGSNC SEACTNGSFG 401 450 ENSTTRP00000005223/1-421 ---------- ---------- ---------- -------PLG WYGPDCQSPC ENSP00000310998/1-515 ---------- ---------- ---------- -------PLG WHGPGCQRPC ENSBTAP00000010385/1-526 ---------- ---------- ---------- -------PLG WYGPGCQSPC bmy_14655T0/1-570 EDCAKKCQCH NGATCDPVRG TCACPPGFTG DICVQECPLG WYGLGCQSPC BACU009144/1-545 EDCAKKCQCH NGATCDPVRG TCACPPGFTG DICVQECPLG WYGPGCQSPC 451 500 ENSTTRP00000005223/1-421 KCEHQCPCDP QTGNCSL--- -------SRV KQCLPLPEDT LRAGELSLFT ENSP00000310998/1-515 KCEHHCPCDP KTGNCSV--- -------SRV KQCLQPPEAT LRAGELSFFT ENSBTAP00000010385/1-526 KCEHQCPCDP QTGNCSVNWS PTLSSLFSRV KECFPPPEVT VQAEELSLLT bmy_14655T0/1-570 KCEHQCPCDP QTGNCSLAWS RTLNSILSRV KQCLPPPEDT VRAGELSLFT BACU009144/1-545 KCEHQCPCDP QTGNCSLAWS RTLNSILSQV KQCLPPPEDT LRAGELSLFT 501 550 ENSTTRP00000005223/1-421 RTTWLAITLA LVFLLLISTV ANVSLFLGSR AARSRHLDGA YVYHPLQEMN ENSP00000310998/1-515 RTAWLALTLA LAFLLLISTA ANLSLLL-SR AERNRRLHGD YAYHPLQEMN ENSBTAP00000010385/1-526 RTTWLAITLA LAFLLLISTA ANVSLFLGSR AARRRHLDGA YVYHPLQEVN bmy_14655T0/1-570 RTTWLAITLA LVFLLLISTV ANVSLFLGSR AARSRHLDGA YVYHPLQEMN BACU009144/1-545 RTTWLAITLA LVFLLLISTV ANVCLFLGSR AARSRHLDGA YVYHPLQEMN 551 600 ENSTTRP00000005223/1-421 GELLAAEKEQ PGDTCNPFKD ENSP00000310998/1-515 GEPLAAEKEQ PGGAHNPFKD ENSBTAP00000010385/1-526 GEHPAAEKEQ LGDSSNPFKD bmy_14655T0/1-570 GELLAAEKEP AGDTCNPFQD BACU009144/1-545 GELPAAEKEP AGDTCNPFKD