KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:57 2014 Check: 00 .. Name: ENSP00000311545/1-886 Len: 1179 Check: 451 Weight: 1.00 Name: ENSBTAP00000010390/1-1148 Len: 1179 Check: 906 Weight: 1.00 Name: ENSTTRP00000005633/1-841 Len: 1179 Check: 1110 Weight: 1.00 Name: bmy_17838T0/1-584 Len: 1179 Check: 9382 Weight: 1.00 Name: BACU002557/1-948 Len: 1179 Check: 7517 Weight: 1.00 // 1 50 ENSP00000311545/1-886 MRGFNLLLFW GCCVMHSWEG HIRPTRKPNT K--------- ---GNNCRDS ENSBTAP00000010390/1-1148 ---------- -------MTR HEQPRWSSSS L--------- --DGNGCTDT ENSTTRP00000005633/1-841 MWSFSFLLFW GCCGIYTWGM FTLPSLESMA R--------- --HMNGCTDT bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---MNGCADT BACU002557/1-948 MWSFRFLLFW GCCGIYTWAM FTLPSLEPMT RRERTRRLST NFDMNGCADT 51 100 ENSP00000311545/1-886 TLCPAYATCT NTVDSYYCAC KQGFLSSNGQ NHFKDPGVRC KDIDECSQSP ENSBTAP00000010390/1-1148 TMCPAYATCT NTSRSYYCSC KRGFLSSNGL KTFKGPGVEC KDIDECSQSP ENSTTRP00000005633/1-841 TMCPAYATCT NTSTSYYCTC KKGFLSSNGQ TKFRDPQVEC KDIDECSQSH bmy_17838T0/1-584 TTCPAYATCT NTSTSYYCTC KKGFLSSNGL TKFRDPRVEC K--------- BACU002557/1-948 TMCPAYATCT NTSTSYYCTC KKGFLSSNGL TKFRDPRVEC KDIDECSQSH 101 150 ENSP00000311545/1-886 QPCGPNSSCK NLSGRYKCSC ---------- ---------- ---------- ENSBTAP00000010390/1-1148 TPCGPNSICR NLPGRYRCSC MTGFSSPTGN NWISGKQGHF TCRDINECLS ENSTTRP00000005633/1-841 PPCGPNSICR NLPGRYKCNC ---------- ---------- ---------- bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU002557/1-948 PPCGPNSICR NLPGRYKCNC ---------- ---------- ---------- 151 200 ENSP00000311545/1-886 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010390/1-1148 HGVCPEHSEC TNSLGSYCCS CQVGFTLKNA ICANIDECSQ KPPPCGPNSR ENSTTRP00000005633/1-841 ---------- ---------- ---------- ---------- ---------- bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU002557/1-948 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000311545/1-886 ---------- --LDGFSSPT GNDWVPGKPG NFSCTDINEC LTSSVCPEHS ENSBTAP00000010390/1-1148 CRNLPGRYEC SCLTGFSSPT GNNWISGKPG HFTCTDINEC LSHGVCPEHS ENSTTRP00000005633/1-841 ---------- --LPGFSSPT GNNWNPGKPG HFTCTDINEC LDSGICPEHS bmy_17838T0/1-584 ---------- ---------- ---------- -----DINEC LYSGVCPEHS BACU002557/1-948 ---------- --LSGFSSPT GNNWNPGKPG HFTCTDINEC LYSGVCPEHS 251 300 ENSP00000311545/1-886 DCVNSMGSYS CSCQVGFISR NSTCEDVDEC ADPRACPEHA TCNNTVGNYS ENSBTAP00000010390/1-1148 ECTNSLGSYR CSCKVGFTSG NSTCEDVDEC ANPRSCPEHS TCHNSLGSYS ENSTTRP00000005633/1-841 ECTNSLGSYR CSCQVGYTSK NSSCEDVDEC ADPRTCPKHS TCHNSLGSYS bmy_17838T0/1-584 ECTNSLGSYR CSCQVGFTSN NSTCEDVDEC ABPRTCPEHS TCHNSLGSYS BACU002557/1-948 ECTNSLGSYR CSCQVGFTSN NSSCEDVDEC ADPRTCPEHS TCHNSLGSYS 301 350 ENSP00000311545/1-886 CFCNPGFESS SGHLSFQGLK ASCEDIDECT EM-------- ---------- ENSBTAP00000010390/1-1148 CVCNPGFQSR SGRKSFQGPG EMCQDIDECS QKPPPCGPNS RCRNLPGRYE ENSTTRP00000005633/1-841 CACNPGFESS RGKMSFQGLG ETCEDV---- ---------- ---------- bmy_17838T0/1-584 CVCNPGFESS RGKMSFQGXG ETCEGT---- ---------- ---------L BACU002557/1-948 CVCNPGFESS RGKMSFQGLG ETCEDVDECS RNSTLCGPSS VCTNILGNYS 351 400 ENSP00000311545/1-886 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010390/1-1148 CSCLTGFSSP TGNNWISGKP GHFTCTDINE CLSHGVCPEH SECTNSLGSY ENSTTRP00000005633/1-841 ---------- ---------- ---------- ---------- ---------- bmy_17838T0/1-584 HFVVPVPSAP T--SW--ENT VAPACQDIDE CLDK------ ---------- BACU002557/1-948 CSCLPGFFSP D--LWSPEKP EAFKCTDIDE CLDK------ ---------- 401 450 ENSP00000311545/1-886 ---------- ---------- ------CPIN STCTNTPGSY FCTCHPGFAP ENSBTAP00000010390/1-1148 RCSCKVGFTS GNSTCEDVDE CANPRSCPEH STCHNSLGSY SCVCNPGFQS ENSTTRP00000005633/1-841 ---------- ---------- ---------- ---------- ---------- bmy_17838T0/1-584 ---------- ---------- ------CLFN ATCTNTPGSY FCTCHLGFAP BACU002557/1-948 ---------- ---------- ------CLFN ATCTNTPGSY FCTCHLGFAP 451 500 ENSP00000311545/1-886 SNGQ------ ---------- ---------- ---------- ---------- ENSBTAP00000010390/1-1148 RSGKKSFQGP GEMCQDIDEC SQTPPTCGPN SSCRNLPGRY ECSCLTGFSS ENSTTRP00000005633/1-841 ---------- ---------- ---------- ---------- ---------- bmy_17838T0/1-584 SNGQ------ ---------- ---------- ---------- ---------- BACU002557/1-948 SNGQ------ ---------- ---------- ---------- ---------- 501 550 ENSP00000311545/1-886 ---------- ---------- ---------- ---------- ------LNFT ENSBTAP00000010390/1-1148 PTGNNWIPGK SGHFTCTDIN ECLSHGVCPE HSECTNSLRS FCCSCDVGFT ENSTTRP00000005633/1-841 ---------- ---------- ---------- ---------- ---------- bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ------LNSI BACU002557/1-948 ---------- ---------- ---------- ---------- ------LNSI 551 600 ENSP00000311545/1-886 DQGVECRDID ECRQDPSTCG PNSICTNALG SYSCGCIAGF HPNPEGSQ-- ENSBTAP00000010390/1-1148 SKNSICENID ECLQDPSRCG PDSVCTNTLG SYSCGCVVGF HPNPEGSW-- ENSTTRP00000005633/1-841 ---------D ECSRNSTLCG PSSVCTNILG KYSCSCLPGF F--SPGLWSP bmy_17838T0/1-584 DQKVDCIDID ECLQDPSPCG PNSVCTNTLG SYSCGCMVGF HPNPEVSW-- BACU002557/1-948 DQKVDCIDID ECLQDPSPCG PNSVCTNTLG SYSCGCMVGF HPNPEVSW-- 601 650 ENSP00000311545/1-886 -KDGNFSCQR VLFKCKEDVI PDNKQIQQCQ EGTAVKPAYV SFCAQINNIF ENSBTAP00000010390/1-1148 -KHGNFSCQR IPFKCKDDVI PSNMQVQLCH AGAAVEPKYV SFCALMNATL ENSTTRP00000005633/1-841 EKPEAFKCRG VLFKCKEDVI PNNEWAQLCQ VGAAVEPGYV SFCALMNATF bmy_17838T0/1-584 -KYGNFSCKR VPFKCKEDVI PNNEWVQLCQ VGAAVEPEYV SYCALMNATL BACU002557/1-948 -KYGNFSCKR VPFKCKEDVI PNNEWVQLCQ VGAAVEPEYV SYCALMNATL 651 700 ENSP00000311545/1-886 SVLDKVCENK TTVVSLKNTT ESFVPVLKQI STWTKFTKEE TSSLATVFLE ENSBTAP00000010390/1-1148 SVLDNVCENK TTVVSLKSTA KRLDSVIEKT SKWSNFTKEE TSTLATVLLE ENSTTRP00000005633/1-841 GILDGVCKNK TTVVSLKSTA ESFASVIEQT SVWSNFTKEK TSTLATVLLE bmy_17838T0/1-584 SILDHVCKNR TXVVSLKSMA ESFASVIEQT STWSNFTKEK TSTLATVLLE BACU002557/1-948 SILDDVCKNK TTVVSLKSTA ESFASVIEQT STWSNFTKEK TSTLATVLLE 701 750 ENSP00000311545/1-886 SVESMTLASF WKPSANITPA VRTEYLDIES KVINKECSEE NVTLDLVAKG ENSBTAP00000010390/1-1148 SVESTTLAAF LKPSANVSQT IQTKHLDIES KVIDKECTKE NETFKLKAKG ENSTTRP00000005633/1-841 SVESATLAAL LKPSANVSQT IQTDHLDIES KIINKGCTEE NEVFSLKAKG bmy_17838T0/1-584 SVESTTLAAL LKPSANVSQT IQTDYLDIES KVINRGCTEE NEAFQLKAKG BACU002557/1-948 SVESTALAAL LKPSANVSQT IQTDYLDIES KVINRGCTEE NEAFQLKAKG 751 800 ENSP00000311545/1-886 DKMKIGCSTI EESESTETTG VAFVSFVGME SVLNERFFKD HQAPLTTSEI ENSBTAP00000010390/1-1148 DEMKIWCSTI KESESTGING VAFVSFSGME SILDERFLKD LQIPWASSKK ENSTTRP00000005633/1-841 DEMKIRCSTI EESESTGVSG VAFFSFAGME SVLDERFFQD PQTHLANSKR bmy_17838T0/1-584 DEMKIWCSTV KQSESTGING VAFVSLAGME SILDERFFQD PQIPLANSKR BACU002557/1-948 DEMRIWCSTV EQSESTGING VAFVSLAGME SILDERFFQD PQIPLANSKR 801 850 ENSP00000311545/1-886 KLKMNSRVVG GIMTGEKKDG FSDPIIYTLE NIQPKQKFER PICVSWSTDV ENSBTAP00000010390/1-1148 KLKMNSRVVG GIITGGKKDG FSKPVIYTLE NIKPKQDFES AICVSWKPDV ENSTTRP00000005633/1-841 KLKLNSRIAG GIITGEKKDG FSKPVTYTLE NIEPKRNFES PICVSWSTDV bmy_17838T0/1-584 KLKLNSRIVG GIITGEKKDG FSKPVIYTLE NIEPKQNFES PICVSWSTDV BACU002557/1-948 KLKLNSRIVG GIITGEKKDG FSKPVIYTLE NIEPKQNFES PICVSWSTDV 851 900 ENSP00000311545/1-886 KGGRWTSFGC VILEASETYT ICSCNQMANL AVIMASGELT MDFSLYIISH ENSBTAP00000010390/1-1148 EGGRWTPSGC VLLEASKTHT VCGCNQMVNL AVIMASGEVT MEFTLYLISH ENSTTRP00000005633/1-841 EGGRWTPSGC AVLEVSETHT GCSCNRMVNL AIIMAAGELT XXXXXXXXXX bmy_17838T0/1-584 EGGRWTPSGC AILEASETHT GCSCNRMVNL AVIMAAGEVT MEFTLYIISH BACU002557/1-948 EGGRWTPSGC AILEVSETHT GCSCNRMVNL AVIMAAGELT MEFTLYIISH 901 950 ENSP00000311545/1-886 VGIIISLVCL VLAIATFLLC RSIRNHNTYL HLHLCVCLLL AKTLFLAGIH ENSBTAP00000010390/1-1148 VGTIISLVCL AMAIITFLLC RTLRNQNTYI HLHLCICLFL AKMLFLTGVD ENSTTRP00000005633/1-841 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17838T0/1-584 VGMIISLVCL TVAIITFLLC RTIQNHNTYL HLHLC----- ---------- BACU002557/1-948 VGMIISLVCL TVAIITFLLC RTIRNHNTYL HLHLCVCLFL AKILFLTGVD 951 1000 ENSP00000311545/1-886 KTDNKMGCAI IAGFLHYLFL ACFFWMLVEA VILFLMVRNL KVVNYFSSRN ENSBTAP00000010390/1-1148 KTDNQMGCAL IAGFLHYLFL ACFFWMLVEA VMLFLMVRNL KVVNYFSSRN ENSTTRP00000005633/1-841 XXXXXMGCAI IAGFLHYLFL ACFFWMLVEA VMLFLMARNL KVVNYFSSRN bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU002557/1-948 KTGNQMGCAI IAGFLHYLFL ACFFWMLVEA VMLFLMARNL KVVNYFSSRN 1001 1050 ENSP00000311545/1-886 IKMLHICAFG YGLPMLVVVI SASVQPQGYG MHNRCWLNTE TGFIWSFLGP ENSBTAP00000010390/1-1148 IKMLYLCAFG YGLPGLVVAV SAGLQPQGYG MYNRCWLNTE TGFIWSFLGP ENSTTRP00000005633/1-841 IKMRYLCAFG YGLPALVVAV SAVIQPQGYG MYNRCWLNTE TGFIWSFLGP bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU002557/1-948 IKMRYLCAFG YGLPALVVAV SAIIQPQGYG IYNRCWLNTE TGFIWSFLGP 1051 1100 ENSP00000311545/1-886 VCTVIVINSL LLTWTLWILR QRLSSVNAEV STLKDTRLLT FKAFAQLFIL ENSBTAP00000010390/1-1148 VCTIIVVNSI LLTWTLCILR QKLSSVNAEV STLKDTRLLT FKAFAQIFIL ENSTTRP00000005633/1-841 VCTIIVINSI LLTGTLWILR QQISSVSTEV SKLKDTRLLT FKAFAQIFIL bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU002557/1-948 VCTIIVINSI LLTGTLWILR QRLSSVSAEV SKLKDTRLLT FKAFAQIFIL 1101 1150 ENSP00000311545/1-886 GCSWVLGIFQ IGPVAGVMAY LFTIINSLQG AFIFLIHCLL NGQVREEYKR ENSBTAP00000010390/1-1148 GCSWVLGIFQ IGPMANIMAY LFTIINSLQG AFIFLIHCVL SRQVREEYRR ENSTTRP00000005633/1-841 GCSWVLGIFQ FGPMANIMAY LFTIINSLQG AFIFLIHCLL NRQVREEYRR bmy_17838T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU002557/1-948 GCSWVLGIFQ IGPMANIMAY LFTIINSLQG AFIFLIHCLL NRQVREEYRR 1151 1200 ENSP00000311545/1-886 WITGKTKPSS QSQTSRILLS SMPSASKTG ENSBTAP00000010390/1-1148 CTTRKTKPSS ETQTSGILLS SVPSTSKTV ENSTTRP00000005633/1-841 CMTRKTKPSS RSETSGIVLS SVPSTSKTG bmy_17838T0/1-584 ---------- ---------- --------- BACU002557/1-948 CMTRKTKPSS QSETSGIVLS SVPSTSKTG