KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:40:58 2014 Check: 00 .. Name: ENSP00000334854/1-412 Len: 466 Check: 5654 Weight: 1.00 Name: ENSBTAP00000010396/1-409 Len: 466 Check: 5106 Weight: 1.00 Name: ENSTTRP00000015078/1-395 Len: 466 Check: 7014 Weight: 1.00 Name: bmy_13788T0/1-463 Len: 466 Check: 6785 Weight: 1.00 Name: BACU020379/1-393 Len: 466 Check: 836 Weight: 1.00 // 1 50 ENSP00000334854/1-412 MMALWSLLHL TFLGFSITLL LVHGQGFQGT AAIWPSLFNV NLSKKVQESI ENSBTAP00000010396/1-409 -MALRLLLHL TFLGLGTTQP LAQQQGFSVP AFDWPSSSNL NSPQEVPDLI ENSTTRP00000015078/1-395 -MALRLLLHL TFLGLGTP-- ----PGSSVS AVDWSSFFNL NSPQEVQETI bmy_13788T0/1-463 -MALWLLPHL TFLRLGTPQP LARVCGFSVP AVDWPSFFNL NSPQEVQETI BACU020379/1-393 -LELWDL--- ---GPRAP-- ----GDLDLH PSDWPSFFNL NSPQEVQETI 51 100 ENSP00000334854/1-412 QIPNNGSAPL LVDVRVFVSN VFNVDILRYT MSSMLLLRLS WLDTRLAWNT ENSBTAP00000010396/1-409 QIPNNGSKPL VVDVQVFVSN VFNVDILRYT VSSTLLLRLS WLNTRLALNS ENSTTRP00000015078/1-395 QIP-NGSAPL LVDVQVFVSN VFNVDILRYT VSSTMLLRLS WLDTRLA--- bmy_13788T0/1-463 QIPNNGSAPL LVDMQVFVSN VFNVDILRYT VSSTMLLRLS WLDTRLALNS BACU020379/1-393 QIPNNGSTPL LVDVQVFVSN VFNVDILRYT ASSTMLLRLS WLDTRLALNS 101 150 ENSP00000334854/1-412 SAHPRHAITL PWESLWTPRL TILEALWVDW RDQSPQARVD QDGHVKLNLA ENSBTAP00000010396/1-409 TGHQRNPVML PWDVLWMPRL TVREALWVNW QDKSPQARVD RDGHIEFDLA ENSTTRP00000015078/1-395 ---RQGRVTL PWDSLWTPGL TIREVLWVNW QGQSPQARVD RDGHIELYLV bmy_13788T0/1-463 TGHRQGRVTL PWDSLWTPGL TIREALWVSW QDQSPQARVD RDGHIELYLA BACU020379/1-393 TGHRQGRVTL PWDSLWTPGL TIQEALWVSW QNQSPQARVD RDGHIELYLA 151 200 ENSP00000334854/1-412 LATETNCNFE LLHFPRDHSN CSLSFYALSN TAMELEFQAH VVNEIVSVKR ENSBTAP00000010396/1-409 LTTETNCDFE LFHFPRDQSD CHLTFFAFSN TVTELEFQVH AVNEIVSVKR ENSTTRP00000015078/1-395 LTTETNCDFE LFHFPRDQRH CSLSFFAFGN TVMELEFQAH VVNEMVSVKR bmy_13788T0/1-463 LTTETYCDFE LFHFPRDQSD CSLSFFAFGN TVMELEFQAH AVNEIVSVKR BACU020379/1-393 LTTETYCDFE LFHFPRDQSD CSLSFFAFGN TVMELEFQAH AVNEIVSVKR 201 250 ENSP00000334854/1-412 EYVVYDLKTQ VPPQQLVPCF QVTLRLKNTA LKSIIALLVP AEALLLADVC ENSBTAP00000010396/1-409 EFVVQDLKTQ IPPQHLVPCF QVTLRLQNTA LKAILTLLVP GEALLLADLC ENSTTRP00000015078/1-395 EYVVQDLKTQ VPSQQLVPCF QVTLRLQNTA LKAIIALSVP GEALLLADLC bmy_13788T0/1-463 EYVVQDLKTQ VPSQQLVPCF QATLRPQNTA LKAIIALLVP GEALPLADPC BACU020379/1-393 EYVVQDLK-Q VPSQQLVPCF QVTLRLQN-A LKAVIALLVP GEALLLADLC 251 300 ENSP00000334854/1-412 GGLLPLRAIE RIGYKVTLLL SYLVLHSSLV QALPSSSSCN PLL------- ENSBTAP00000010396/1-409 GGLLPLHT-E RIAYKVTLLL SYLVFHSSLI QALPSSSSCN PLL------- ENSTTRP00000015078/1-395 GALLPLRT-A RIAYKVTLLL GYLVFHSSLV QALPSFSSCN PLL------- bmy_13788T0/1-463 GPLLPLRT-E HIAYKVTLLL GYLVFHSSLV QALPSSSSCK PLLSKAHTLA BACU020379/1-393 GPLLPLRT-E RIAYKVTRLL GYLVFRSSLV QALPSSSSCN PLL------- 301 350 ENSP00000334854/1-412 ---------- ---------- ---------- ---------- ----IYYFTI ENSBTAP00000010396/1-409 ---------- ---------- ---------- ---------- ----VYYFTV ENSTTRP00000015078/1-395 ---------- ---------- ---------- ---------- ----IHYVTA bmy_13788T0/1-463 WPGAGPPCAG PTSFCPHLLS PKPGRLCSGA WALKAGPGPC PPLPAHLPSS BACU020379/1-393 ---------- ---------- ---------- ---------- ----IHYFTV 351 400 ENSP00000334854/1-412 LL---LLLFL STIETVLLAG LLARGNLGAK SGPSPAPRGE QREHGNPGPH ENSBTAP00000010396/1-409 LL---LLLFV STTETVLLTG LLARGNLRAE DSPSPALNGE QHNRGKPGPN ENSTTRP00000015078/1-395 LL---LLLFI STTETGLLSG LLAHSNLRAE SSPSPVLSRE RHDCGNPGPN bmy_13788T0/1-463 LLHCPMLLFI STTETVLLSG LLAHSNLRAE SSPSPVLRGE QHDCGSPGPD BACU020379/1-393 LC-----ALH HTTETVLLSG LLGPSNPRVE SSPSPVLRGE QHDCGSPGPD 401 450 ENSP00000334854/1-412 PAEEPSRGVK GSQRSWPETA DRIFFLVYVV GVLCTQFVFA GIWMWAACKS ENSBTAP00000010396/1-409 P-EEAPGAGK GSRRSWAEAA DRIFFQVYVV GVACSQFIFI ALWMWATCKS ENSTTRP00000015078/1-395 P-EEASRGVK GSRRSWAEAA -HISFLVYVA GALCSQFICA VLRMWATCKL bmy_13788T0/1-463 P-EEASRGVK GSRRSWPEAA DHIFFLVYVA GVLCSQFIFA VLWMWATCKS BACU020379/1-393 P-EEASRGVK GSRRSWPEAA DHIVFLVYVA GVLCSQFIFA VLWMWATCKS 451 500 ENSP00000334854/1-412 DAAPGEAAPH GRRPRL ENSBTAP00000010396/1-409 DPAPGAASPH GGQPRL ENSTTRP00000015078/1-395 DPAPGEAAPH GGWPRL bmy_13788T0/1-463 DPAPGEAAPH GGWPRL BACU020379/1-393 DPAPGEAAPH GGWPRL