KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:06 2014 Check: 00 .. Name: ENSP00000306190/1-335 Len: 339 Check: 9727 Weight: 1.00 Name: ENSBTAP00000010425/1-338 Len: 339 Check: 8904 Weight: 1.00 Name: ENSTTRP00000002492/1-339 Len: 339 Check: 4775 Weight: 1.00 Name: bmy_06321T0/1-241 Len: 339 Check: 5768 Weight: 1.00 Name: BACU003870/1-321 Len: 339 Check: 4795 Weight: 1.00 // 1 50 ENSP00000306190/1-335 MDPKGLLSLT FVLFLSLAFG ASYGTGGRMM NCPK-ILRQL GSKVLLPLTY ENSBTAP00000010425/1-338 MDPKGLLSSN VLLLFSLIIE LSCRTGEGLT SSTKTILGQL GSSVLLPLAS ENSTTRP00000002492/1-339 MDPKGLLSLN VLLFFSLAFE LSCRTGEGST NCPVMILGRL GSSVLLPLTS bmy_06321T0/1-241 MDPKGLLSLN VLLFFSLAFE LSCRTGEGST NCPVMILGRL GSSVLLPLTS BACU003870/1-321 ---------- --------FV LLPPTGEGST NCPVMILGRL GSSVLLPLTS 51 100 ENSP00000306190/1-335 ERINKSMNKS IHIVVTMAKS LENSVENKIV SLDPSEAGPP RYLGDRYKFY ENSBTAP00000010425/1-338 EEISRSMNKS IHILVTMAES PKDTVKKKIV SLDLRKGDSP R-LNDGYEFH ENSTTRP00000002492/1-339 DGISKSMNKS IHILVTVAGS PIDTVKKKIV SLDLRKGDSP HHLENGYEFH bmy_06321T0/1-241 EGISKSMNKS IHILVTMAES PIDTIKKKIV SLDLRKGDSP XHLENGYEFH BACU003870/1-321 EEISKSMNKS IHILVTMAES PVDTIKKKIV SLDLRKGDSP RHLENGYEFH 101 150 ENSP00000306190/1-335 LENLTLGIRE SRKEDEGWYL MTLEKNVSVQ RFCLQLRLYE QVSTPEIKVL ENSBTAP00000010425/1-338 LENLSLRILK SRKEDEGWYF ISLEENVSVQ HFSLQLKLYE QVSTPQIKVL ENSTTRP00000002492/1-339 PENLSLRILK SRKEDEGWYF MSLEENISVQ HFCLQLKLYE QVSTPEIKVL bmy_06321T0/1-241 PENLSLRILK SRKEDEGWYF MSLEENVSVQ QFCLQLKLYE QVSTPEIKVL BACU003870/1-321 PENLSLRILK SRKEDEGWYF MSLEENVSVQ QFCLQLKLYE QVSTPEIKVL 151 200 ENSP00000306190/1-335 NKTQENGTCT LILGCTVEKG DHVAYSWSEK AGTHPLNPAN SSHLLSLTLG ENSBTAP00000010425/1-338 NTTQEDGNCS LMLACMVEKG DHVTYNWSEE AGVPLLSPTN SSHLLYLTLG ENSTTRP00000002492/1-339 NSSQENGNCS LMLACMVEKG DHVAYNWSEE AGTPLLSPTK NSHLLYLTLG bmy_06321T0/1-241 NSSQENGTCS LMLACMVEKG DHVAYNWSEE AGAPLLSPTK NSHLLYLTLG BACU003870/1-321 NSSQENGTCS LMLACMVEKG DHVAYNWSEE AGAPLLSPTK NSHLLYLTLG 201 250 ENSP00000306190/1-335 PQHADNIYIC TVSNPISNNS QTFSPWPGCR TDPSETKPWA VYAGLLGGVI ENSBTAP00000010425/1-338 PQHANNVYIC TVSNPISNSS QTFIPWPSCS SSAPESRQWG LYAGLFLGGI ENSTTRP00000002492/1-339 PQDANNIYIC TVSNPISNGS QTFIPWSRCS LGSSEARQWA LYAGLFLGVI bmy_06321T0/1-241 PQDANNIYIC TVSNPISNGS QTFIPWSRCS LGSS------ ---------- BACU003870/1-321 PQDANNIYIC TVSNPISNGS QTFIPWSRCS LGSSESRQWG LYAGLFLGVI 251 300 ENSP00000306190/1-335 ---MILIMVV ILQLRRRGKT NHYQTTVEKK SLTIYAQVQK PGPLQKKLDS ENSBTAP00000010425/1-338 VGIIMILQVV ILLLRRRGKT DNYQPTTEAK SLTIYAQVQT SGSVQKKPDP ENSTTRP00000002492/1-339 VGVIMILQVV ILLLRRRGKT DNYQPTMEAK SLTIYAQVQK SGSVQKKPDS bmy_06321T0/1-241 ---------- ---------- ---------- ---------- ---------- BACU003870/1-321 VGVIMILQVV ILLLRRRGKT DNYQPTMEAK SLTIYAQVQK SGSVQKKPDS 301 350 ENSP00000306190/1-335 FPAQDPCTTI YVAATEPVPE SVQETNSITV YASVTLPES ENSBTAP00000010425/1-338 LPAQDPCTTI YVAATEPVPE PIQESGSFTV YASVTLPES ENSTTRP00000002492/1-339 LPAQDPCTTI YVAATEPVPE PVQQSSSITV YASVTLPES bmy_06321T0/1-241 --GECPCGG- ---------- ---------- --------- BACU003870/1-321 LPAQDPCTTI YVAATEPVPE PVQESSSITV YASVTLPES