KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:06 2014 Check: 00 .. Name: bmy_04208T0/1-485 Len: 567 Check: 6852 Weight: 1.00 Name: ENSP00000346959/1-521 Len: 567 Check: 3495 Weight: 1.00 Name: ENSBTAP00000010428/1-456 Len: 567 Check: 4688 Weight: 1.00 Name: BACU020136/1-471 Len: 567 Check: 9336 Weight: 1.00 Name: ENSTTRP00000013129/1-501 Len: 567 Check: 9282 Weight: 1.00 // 1 50 bmy_04208T0/1-485 ---------- -------ESS PERTGIATGP SASSNYQGHR GRHLTNVTIP ENSP00000346959/1-521 MEASWGSFNA ERGWYVSVQQ PEEAEAEELS PLLSNELHRQ RSPGVSFGLS ENSBTAP00000010428/1-456 MEVPAGVINA EPGWFVSTQE PEEAEAEESS PLLSNEVHTQ RSRGASFGFS BACU020136/1-471 ---------- -----VSARQ PEEAEAEELS PLLSNELHRQ GSPGVSFGFS ENSTTRP00000013129/1-501 ---------- -----VSARQ PEEAEAEELS PLLSNELHRQ GSPGVSFGFS 51 100 bmy_04208T0/1-485 FLCVTQQLAP RPDPHLMLWC SSEMGRRQVG GPSMTPSMFA AEGRASSDHV ENSP00000346959/1-521 VFNLMNAIMG SG----ILGL AYVLANTGVF GFSFLLLTVA LLASYSVHLL ENSBTAP00000010428/1-456 VFNLMNAIMG SG----ILGL AYVMAHTGIL GFSFLLLIVA LLASYSVHLL BACU020136/1-471 VFNLMNAIMG SG----ILGL AYVMAHTGIL GFSFLLLIVA LLASYSVHLL ENSTTRP00000013129/1-501 VFNLMNAIIG SG----ILGL AYVMAHTGIL GFSFLLLIVA LLASYSVHLL 101 150 bmy_04208T0/1-485 ESSFLPGPGE YTEKQRAVTS YEDLGLFAFG LPGKVVVAGT IIIQNIGGKQ ENSP00000346959/1-521 LSMCI----- ----QTAVTS YEDLGLFAFG LPGKLVVAGT IIIQNIGAMS ENSBTAP00000010428/1-456 LSLCI----- ----QTAVTS YEDLGLFAFG LPGKVMVAST IIIQNIGAMS BACU020136/1-471 LSLCI----- ----QTAVTS YEDLGLFAFG LPGKVVVAGT IIIQNIGAMS ENSTTRP00000013129/1-501 LSLCI----- ----QTAVTS YEDLGLFAFG LPGKMVVAGT IIIQNIGAMS 151 200 bmy_04208T0/1-485 LKVHCLCGKF SELSFRFYKL ASMKEFYLDN CKYIFIRKIW YSLNLNRNHQ ENSP00000346959/1-521 SYLLIIKTEL P--------- AAIAEF---- ---------- ----LTGDYS ENSBTAP00000010428/1-456 SYLLIIKTEL P--------- ATISEF---- ---------- ----LSGDYS BACU020136/1-471 SYLLIIKTEL P--------- AAISEF---- ---------- ----LSGDHN ENSTTRP00000013129/1-501 SYLLIIKTEL P--------- AAISEF---- ---------- ----LSGDHS 201 250 bmy_04208T0/1-485 EYVIEKRSWY LDGETLLIII CVAIVFPLAL LPKIGFLGYT SSLSFFFMVF ENSP00000346959/1-521 ------RYWY LDGQTLLIII CVGIVFPLAL LPKIGFLGYT SSLSFFFMMF ENSBTAP00000010428/1-456 ------GSWY LDGDTLLIII CVGIVFPLAL LPKIGFLGYT SSLSFFFMVF BACU020136/1-471 ------GSWY LDGETLLIII CVAIVFPLAL LPKIGFLGYT SSLSFFFMVF ENSTTRP00000013129/1-501 ------GSWY LDGETLLIII CVAIVFPLAL LPKIGFLGYT SSLSFFFMVF 251 300 bmy_04208T0/1-485 FALVIIIKKW SIPCPLTLNS VEQYSQISNA TDDCKPKLFH FSKESAYAIP ENSP00000346959/1-521 FALVVIIKKW SIPCPLTLNY VEKGFQISNV TDDCKPKLFH FSKESAYALP ENSBTAP00000010428/1-456 FALVVIIKKW SIPCPLTLNY VEQYFQISSA TDDCKPKLFH FSKESAYAIP BACU020136/1-471 FALVIIIKKW SIPCPLTLNS VEQYSQISNA TDDCKPKLFH FSKESAYAIP ENSTTRP00000013129/1-501 FALVIIIKKW SIPCPLTLNS VEQYFQISNA TDACKPKLFH FSKESAYAIP 301 350 bmy_04208T0/1-485 TMAFSFLCHT SILPIYCELQ RPSKKRMQNV TNTAIALSFL IYFISALFGY ENSP00000346959/1-521 TMAFSFLCHT SILPIYCELQ SPSKKRMQNV TNTAIALSFL IYFISALFGY ENSBTAP00000010428/1-456 TMAFSFLCHT SILPIYCELQ SPSKKRMQNV TNTAIALSFL IYFISALFGY BACU020136/1-471 TMAFSFLCHT SILPIYCELQ RPSKKRMQNV TNTAIALSFL IYFISALFGY ENSTTRP00000013129/1-501 TMAFSFLCHT SILPIYCELQ RPSKKRMQNV TNTAIALSFL IYFISALFGY 351 400 bmy_04208T0/1-485 LTFYDSVASE LLQGYSKYLP HDVVVMTVKL CILFAVLLTV PVIHFPARKA ENSP00000346959/1-521 LTFYDKVESE LLKGYSKYLS HDVVVMTVKL CILFAVLLTV PLIHFPARKA ENSBTAP00000010428/1-456 LTFYDSVASE LLQGYSKYLP HDVVIMTVKL CILFSVLLTV PLIHFPARKA BACU020136/1-471 LTFYDSVASE LLQGYSKYLP HDVVVMTVKL CILFAVLLTV PLIHFPARKA ENSTTRP00000013129/1-501 LTFYDSVASE LLQGYSKYLP HDVVVMTVKL CILFAVLLTV PLIHFPARKA 401 450 bmy_04208T0/1-485 LMMMFFSNFP FSWIRHSLIT VALNIIIVLL AIYVPDIKNV FGVVGSSTST ENSP00000346959/1-521 VTMMFFSNFP FSWIRHFLIT LALNIIIVLL AIYVPDIRNV FGVVGASTST ENSBTAP00000010428/1-456 LMMMFFSNFP FSWIRHSLIT LALNIVIVLL AIYVPDIRNV FGIVGSSTST BACU020136/1-471 LMMMFFSNFP FSWIRHSLIT VALNIIIVLL AIYVPDIRNV FGVVGSSTST ENSTTRP00000013129/1-501 LMMMFFSNFP FSWIRHSLIT IALNIMIVLL AIYVPDIRNV LGVVGSSTST 451 500 bmy_04208T0/1-485 CLIFVFPGLF YLKLSREDFL SWKKFGAFVL LIFGILVGNF SLALIIFNWI ENSP00000346959/1-521 CLIFIFPGLF YLKLSREDFL SWKKLGGLIL SHRLACSGVI SAHCNLCLPD ENSBTAP00000010428/1-456 CLIFVFPGLF YLKMSREDFL SWKKLGAFVL LIFGILVGNF SLALIIFNWI BACU020136/1-471 CLIFVFPGLF YLKLSREDFL SWKKFGVAAR RRQTALGTWF KFKAHLHMMS ENSTTRP00000013129/1-501 CLIFVFPGLF YLKLSREDFL SWKKLGXXXX XXXXXXXXXX XXXXXXXXXX 501 550 bmy_04208T0/1-485 NK-------- ---------- ---------- ---------- ---------- ENSP00000346959/1-521 SSNPPTSASR VAETTGRDTM EMCTQRKGHA RTQQEGNCLQ AKGRGLRRTK ENSBTAP00000010428/1-456 NK-------- ---------- ---------- ---------- ---------- BACU020136/1-471 HTHCQRKGGR ENLDTQRDTR HAHVQRKDHV RP-------- ---------- ENSTTRP00000013129/1-501 XXXXXXXXXX XXXXXXRDTR HAHVQRKDHV RPE---DSLQ AKERGLRRIK 551 600 bmy_04208T0/1-485 ---------- ------- ENSP00000346959/1-521 RVHTLILHFP TSRTVSK ENSBTAP00000010428/1-456 ---------- ------- BACU020136/1-471 ---------- ------- ENSTTRP00000013129/1-501 PNTLILLL-- ASRTMSK