KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:08 2014 Check: 00 .. Name: ENSP00000396995/1-698 Len: 701 Check: 5937 Weight: 1.00 Name: ENSBTAP00000010440/1-460 Len: 701 Check: 4488 Weight: 1.00 Name: ENSTTRP00000012691/1-475 Len: 701 Check: 4313 Weight: 1.00 Name: bmy_04254T0/1-522 Len: 701 Check: 4022 Weight: 1.00 Name: BACU001878/1-446 Len: 701 Check: 5076 Weight: 1.00 // 1 50 ENSP00000396995/1-698 MRPRPRSAPG KPRRRSRARL RSSRTPSGGA SGGGGSSSSS STATGGSGSS ENSBTAP00000010440/1-460 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012691/1-475 ---------- ---------- ---------- ---------- ---------- bmy_04254T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001878/1-446 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000396995/1-698 TGSPGGAASA PAPAPAGMYR SGERLLGSHA LPAEQRDFLP LETTNNNNNH ENSBTAP00000010440/1-460 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012691/1-475 ---------- ---------- ---------- ---------- ---------- bmy_04254T0/1-522 ---------- ---------- ---------- ---------- ---------- BACU001878/1-446 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000396995/1-698 HQPGAWARRA GSSASSPPSA SSSPHPSAAV PAADPADSAS GSSNKRKRDN ENSBTAP00000010440/1-460 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012691/1-475 ---------- ---------- ---------- ---------- ---------- bmy_04254T0/1-522 ---------- ---------- ---------- ---------- --------MP BACU001878/1-446 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000396995/1-698 KASTYGLNYS LLQPSGGRAA GGGRADGGGV VYSG---TPW KRRNYNQGVV ENSBTAP00000010440/1-460 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012691/1-475 ---------- ---PSGGRAA GGGRADGSGG LYSG---TPW KRRNYNQGVV bmy_04254T0/1-522 DMKFYDMWTW VWVDVHMSAE GPFLKKCFSV LRPGSGDTEL NRRVESEQGG BACU001878/1-446 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000396995/1-698 GLHEEISDFY EYMSPRPEEE KMRMEVVNRI ESVIKELWPS ADVQIFGSFK ENSBTAP00000010440/1-460 ---------- ---------- ---------- ---------- -QVQIFGSFK ENSTTRP00000012691/1-475 GLHEEISDFY EYMSPRPEEE KMRMEVVNRI ESVIKELWPS ADVQIFGSFK bmy_04254T0/1-522 LLHEEISDFY EYMSPRPEEE KMRMEVVNRI ESVIKELWPS ADVQIFGSFK BACU001878/1-446 ---------- --MSPRPEEE KMRMEVVNRI ESVIKELWPS ADVQIFGSFK 251 300 ENSP00000396995/1-698 TGLYLPTSDI DLVVFGKWEN LPLWTLEEAL RKHKVADEDS VKVLDKATVP ENSBTAP00000010440/1-460 TGLYLPTSDI DLVVFGKWEN LPLWTLEEAL RKHKVADEDS VKVLDKATVP ENSTTRP00000012691/1-475 TGLYLPTSDI DLVVFGKWEN LPLWTLEEAL RKHKVADEDS VKVLDKATVP bmy_04254T0/1-522 TGLYLPTSDI DLVVFGKWEN LPLWTLEEAL RKHKVADEDS VKVLDKATVP BACU001878/1-446 TGLYLPTSDI DLVVFGKWEN LPLWTLEEAL RKHKVADEDS VKVLDKATVP 301 350 ENSP00000396995/1-698 IIKLTDSFTE VKVDISFNVQ NGVRAADLIK DFTKKYPVLP YLVLVLKQFL ENSBTAP00000010440/1-460 IIKLTDSFTE VKVDISFNVQ NGVRAADLIK DFTKKYPVLP YLVLVLKQFL ENSTTRP00000012691/1-475 IIKLTDSFTE VKVDISFNVQ NGVRAADLIK DFTKKYPVLP YLVLVLKQFL bmy_04254T0/1-522 IIKLTDSFTE VKVDISFNVQ NGVRAADLIK DFTKKYPVLP YLVLVLKQFL BACU001878/1-446 IIKLTDSFTE VKVDISFNVQ NGVRAADLIK DFTK------ ---------- 351 400 ENSP00000396995/1-698 LQRDLNEVFT GGIGSYSLFL MAVSFLQLHP REDACIPNTN YGVLLIEFFE ENSBTAP00000010440/1-460 LQRDLNEVFT GGIGSYSLFL MAVSFLQLHP REDACIPNTN YGVLLIEFFE ENSTTRP00000012691/1-475 LQRDLNEVFT GGIGSYSLFL MAVSFLQLHP REDACIPNTN YGVLLIEFFE bmy_04254T0/1-522 LQRDLNEVFT GGIGSYSLFL MAVSFLQLHP REDACIPNTN YGVLLIEFFE BACU001878/1-446 ---------- ---------- -------LHP REDACIPNTN YGVLLIEFFE 401 450 ENSP00000396995/1-698 LYGRHFNYLK TGIRIKDGGS YVAKDEVQKN MLDGYRPSML YIEDPLQPGN ENSBTAP00000010440/1-460 LYGRHFNYLK TGIRIKDGGS YVAKDEVQKN MLDGYRPSML YIEDPLQPGN ENSTTRP00000012691/1-475 LYGRHFNYLK TGIRIKDGGS YVAKDEVQKN MLDGYRPSML YIEDPLQPGN bmy_04254T0/1-522 LYGRHFNYLK TGIRIKD--- ---------- ---------- --------GN BACU001878/1-446 LYGRHFNYLK TGIRIKDGGS YVAKDEVQKN MLDGYRPSML YIEDPLQPGN 451 500 ENSP00000396995/1-698 DVGRSSYGAM QVKQAFDYAY VVLSHAVSPI AKYYPNNETE SILGRIIRVT ENSBTAP00000010440/1-460 DVGRSSYGAM QVKQAFDYAY VVLSHAVSPI AKYYPNNETE SILGRIIRVT ENSTTRP00000012691/1-475 DVGRSSYG-M QVKQAFDY-Y VVLSHAVSPI AKYYPNNETE SILGRIIRVT bmy_04254T0/1-522 DVGRSSYGAM QVKQAFDYAY VVLSHAVSPI AKYYPNNETE SILGRIIRVT BACU001878/1-446 DVGRSSYGAM QVKQAFDYAY VVLSHAVSPI AKYYPNNETE SILGRIIRVT 501 550 ENSP00000396995/1-698 DEVATYRDWI SKQWGLKNRP EPSCNGNGVT LIVDTQQLDK CNNNLSEENE ENSBTAP00000010440/1-460 DEVATYRDWI SKQWGLQNRP EPSCNGNGVT LIVDTQQLDK CNNNLSEENE ENSTTRP00000012691/1-475 DEVATYRDWI SKQWGLQNRP EPSCNGNGVT LIVDTQQLDK CNNNLSEENE bmy_04254T0/1-522 DEVATYRDWI SKQWGLQNRP EPSCNGNGVT LIVDTQQLDK CNNNLSEENE BACU001878/1-446 DEVATYRDWI SKQWGLQNRP EPSCNGNGVT LIVDTQQLDK CNNNLSEENE 551 600 ENSP00000396995/1-698 ALGKCRSKTS ESLSKHSSNS SSGPVSSSSA TQSSSSDVDS DATPCKTPKQ ENSBTAP00000010440/1-460 ALGKCRSKTS ESISKHSSNS SSGPVSSSSA TQSSSSDVDS DATPCKTPKQ ENSTTRP00000012691/1-475 ALGKCRSKTS ESVSKHSSNS SSGPVSSSSA TQSSSSDVDS DATPCKTPKQ bmy_04254T0/1-522 ALGKCRSKTS ESVSKHSSNS SSGPVSSSSA TQSSSSDVDS DATPCKTPKQ BACU001878/1-446 ALGKCRSKTS ESVSKHSSNS SSGPVSSSSA TQSSSSDVDS DATPCKTPKQ 601 650 ENSP00000396995/1-698 LLCRPSTGNR VGSQDVSLES SQAVGKMQST QTTNTSNSTN KSQHGSARLF ENSBTAP00000010440/1-460 LLCRPSTGNR VGSQDVSLES SQTGGKMQST QTTNTPNSTN KSQHGSTRLF ENSTTRP00000012691/1-475 LLCRPSTGNR VGSQDVSLES SQAGGKMQST QTTNISNSTN KSQ------- bmy_04254T0/1-522 LLCRPSTGNR VGSQDVSLES SQAGGKMQST QTTNISNSTN KSQHGSTRLF BACU001878/1-446 LLCRPSTGNR VGSQDVSLES SQAGGKMQST QTTNISNSTN KSQHGSTRLF 651 700 ENSP00000396995/1-698 RSSSKGFQGT TQTSHGSLMT NKQHQGKSNN QYYHGKKRKH KRDAPLSDLC ENSBTAP00000010440/1-460 RSSSKGFQGT TQTSHGSLMT NKQHQGKSNN QYYHGKKRKH KRDAPLSDLC ENSTTRP00000012691/1-475 ---------- ---------- ---------- ---------- ---------- bmy_04254T0/1-522 RSSSKGFQGT TQTSHGSLMT NKQHQGKSNN QYYHGKKRKH KRDAPLSDLC BACU001878/1-446 RSSSKGFQGT TQTSHGSLMT NKQHQGKSNN QYYHGKKRKH KRDAPLSDLC 701 750 ENSP00000396995/1-698 R ENSBTAP00000010440/1-460 R ENSTTRP00000012691/1-475 - bmy_04254T0/1-522 R BACU001878/1-446 R