KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:09 2014 Check: 00 .. Name: ENSP00000349977/1-893 Len: 893 Check: 4701 Weight: 1.00 Name: ENSBTAP00000010451/1-890 Len: 893 Check: 8696 Weight: 1.00 Name: ENSTTRP00000005142/1-892 Len: 893 Check: 1633 Weight: 1.00 Name: bmy_00768T0/1-890 Len: 893 Check: 8894 Weight: 1.00 Name: BACU011918/1-890 Len: 893 Check: 8035 Weight: 1.00 // 1 50 ENSP00000349977/1-893 MATEEFIIRI PPYHYIHVLD QNSNVSRVEV GPKTYIRQDN ERVLFAPMRM ENSBTAP00000010451/1-890 MSMEESIIRI PPYHYIHVLD QNSNVSRVEV GPKTYIRQDN ERILFAPVRM ENSTTRP00000005142/1-892 MATEESIIRI PPYHYIHVLD QNSNVSRVEV GPKTYIRQDN ERVLFAPKHM bmy_00768T0/1-890 MATEESIIRI PPYHYIHVLD QNSNVSRVEV GPKTYIRQDN ERVLFAPKHM BACU011918/1-890 MATEESIIRI PPYHYIHVLD QNSNVSRVEV GPKTYIRQDN ERVLFAPKHM 51 100 ENSP00000349977/1-893 VTVPPRHYCT VANPVSRDAQ GLVLFDVTGQ VRLRHADLEI RLAQDPFPLY ENSBTAP00000010451/1-890 LTVPPRHYCM VANPVARDAQ GTVLFDVTGQ VRLRHADLEI RLAQDPFPLF ENSTTRP00000005142/1-892 VTIPPRHYCT VTNPVARDAQ NAVLFDVTGQ VRLRHADLEI RLAQDPFPLY bmy_00768T0/1-890 VTIPPRHYCT VTNPVARDAQ NAVLFDVTGQ VRLRHADLEI RLAQDPFPLY BACU011918/1-890 VTIPPRHYCT VTNPVARDAQ NAVLFDVTGQ VRLRHADLEI RLAQDPFPLY 101 150 ENSP00000349977/1-893 PGEVLEKDIT PLQVVLPNTA LHLKALLDFE DKDGDKVVAG DEWLFEGPGT ENSBTAP00000010451/1-890 PGEVLEKDIT PLQVVLPNTA LHLKALLDFE DKNGQKVVAG DEWLFEGPGT ENSTTRP00000005142/1-892 PGEVLEKDIT PLQVVLPNTA LHLKALLDFE DKNGDKVVAG DEWLFEGPGT bmy_00768T0/1-890 PGEVLEKDIT PLQVVLPNTA LHLKALLDFE DKNGDKVVAG DEWLFEGPGT BACU011918/1-890 PGEVLEKDIT PLQVVLPNTA LHLKALLDFE DKNGDKVVAG DEWLFEGPGT 151 200 ENSP00000349977/1-893 YIPRKEVEVV EIIQATIIRQ NQALRLRARK ECWDRDGKER VTGEEWLVTT ENSBTAP00000010451/1-890 YIPQKEVEVI EIIQATVIKQ NQALRLRARK ECLDRDGKER VTGEEWLVRS ENSTTRP00000005142/1-892 YIPRKEVEVV EIIQATVIKQ NQALRLRARK ECWDREGKER VTGEEWLVRS bmy_00768T0/1-890 YIPRKEVEVV EIIQATIIKQ NQALRLRARK ECWDREGKER VTGEEWLVRS BACU011918/1-890 YIPRKEVEVV EIIQATIIKQ NQALRLRARK ECWDREGKER VTGEEWLVRS 201 250 ENSP00000349977/1-893 VGAYLPAVFE EVLDLVDAVI LTEKTALHLR ARRNFRDFRG VSRRTGEEWL ENSBTAP00000010451/1-890 VGAYLPAVFE EVLDVVDAVI LTEKTALHLR ARQNFRDVRG VTRRTGEEWL ENSTTRP00000005142/1-892 VGAYLPAVFE EVLDVVDAVI LTEKTALHLR ARQNFRDFRG VTRRSGEEWL bmy_00768T0/1-890 VGAYLPAVFE EVLDVVDAVI LTEKTALHLR ARQNFRDFRG VTRRTGEEWL BACU011918/1-890 VGAYLPAVFE EVLDLVDAVI LTEKTALHLR ARQNFRDFRG VTRHTGEEWL 251 300 ENSP00000349977/1-893 VTVQDTEAHV PDVHEEVLGV VPITTLGPHN YCVILDPVGP DGKNQLGQKR ENSBTAP00000010451/1-890 VTVQDTEAHV PDVYEEVMGV VSVTTLGPHN YCVILDPVGP DGKNQLGQKL ENSTTRP00000005142/1-892 VTTQDTDAHV PDVYEEVMGV VSITTLGPHN YCVILDPVGP DGKNQLGQKR bmy_00768T0/1-890 VTTQDTEAHV PDVYEEVMGV VSITTLDPHN YCVILDPVGP DGKNQLGQKR BACU011918/1-890 VTTQDTEAHV PDVYEEVMGV VSITTLDPHN YCVILDPVGP DGKNQLGQKR 301 350 ENSP00000349977/1-893 VVKGEKSFFL QPGEQLEQGI QDVYVLSEQQ GLLLRALQPL EEGEDEEKVS ENSBTAP00000010451/1-890 VFKGEQSFFL QPGEKLERGI QNVYVLSEQQ GLLLRALQPL EEGEGKEKVS ENSTTRP00000005142/1-892 VVKGEKSFFL QPGEKLERGI QNVYVLSEQQ GLLLRALRPL EEGEGEEKVS bmy_00768T0/1-890 VVKGEKSFFL QPGEKLERGI QNVYVLSEQQ GLLLRALRPL EEGEGEEKVS BACU011918/1-890 VVKGEKSFFL QPGEKLERGI QNVYVLSEQQ GLLLRALRPL EEGEGEEKVS 351 400 ENSP00000349977/1-893 HQAGDHWLIR GPLEYVPSAK VEVVEERQAI PLDENEGIYV QDVKTGKVRA ENSBTAP00000010451/1-890 HQAGDHWLIR GPLEYVPPAK VEVVEERQAI PLDENEGIYV QDVKTGRVRA ENSTTRP00000005142/1-892 HQAGDRWLIR GPLEYVPPAK VEVVEERQAI PLDENEGIYV QDVKTGRVRA bmy_00768T0/1-890 HQAGDRWLIR GPLEYVPPAK VEVVEERQAI PLDENEGIYV QDVKTGRVRA BACU011918/1-890 HQAGDRWLIR GPLEYVPPAK VEVVEERQAI PLDENEGIYV QDVKTGRVRA 401 450 ENSP00000349977/1-893 VIGSTYMLTQ DEVLWEKELP PGVEELLNKG QDPLADRGEK DTAKSLQPLA ENSBTAP00000010451/1-890 VIGSTYMLTQ DEVLWEKELP PGVEELLNKG QDPLADRGEK ETSKTPKLST ENSTTRP00000005142/1-892 VIGSTYMLTQ DEVLWEKELP PGVEGLLNKG QDPLADRGEK ETCKTPRPSA bmy_00768T0/1-890 VIGSTYMLTQ DEVLWEKELP PGVEELLNKG QDPLADRGEK ETSKTPRPSA BACU011918/1-890 VIGSTYMLTQ DEVLWEKELP PGVEELLNKG QDPLADRGEK ETSKTPRPSA 451 500 ENSP00000349977/1-893 PRNKTRVVSY RVPHNAAVQV YDYREKRARV VFGPELVSLG PEEQFTVLSL ENSBTAP00000010451/1-890 PRNKTRVVSY RVPHNAAVQV YDYREKKARV VFGPELVLLG PEEQFTVLSL ENSTTRP00000005142/1-892 PRNKTHVVSY RVPHNAAVQV YDYREKRARV VFGPELVSLG PEEQFTVLSL bmy_00768T0/1-890 PRNKTHVVSY RVPHNAAVQV YDYREKRARV VFGPELVSLG PEEQFTVLSL BACU011918/1-890 PRNKTHVVSY RVPHNAAVQV YDYREKRARV VFGPELVSLG PEEQFTVLSL 501 550 ENSP00000349977/1-893 SAGRPKRPHA RRALCLLLGP DFFTDVITIE TADHARLQLQ LAYNWHFEVN ENSBTAP00000010451/1-890 SAGRPKRPHA RRTLCLLLGP DFFTDVITIE TADHARLQLQ LAYNWHFELS ENSTTRP00000005142/1-892 SAGRPKCPHA RRVLCLLLGP DFFTDVITIE TADHARLQLQ LAYNWHFELS bmy_00768T0/1-890 SAGRPKRPHA RRVLCLLLGP DFFTDIITIE TADHARLQLQ LAYNWHFELS BACU011918/1-890 SAGRPKRPHA RRVLCLLLGP DFFTDIITIE TADHARLQLQ LAYNWHFELS 551 600 ENSP00000349977/1-893 DRKDPQETAK LFSVPDFVGD ACKAIASRVR GAVASVTFDD FHKNSARIIR ENSBTAP00000010451/1-890 DRKDPQETAK LFSVPDFVGD ACKAIASRVR GAVASVTFDD FHKNSARIIR ENSTTRP00000005142/1-892 DRKDPQETAK LFSVPDFVGD ACKAIASRVR GAVASVTFDD FHKNSARIIR bmy_00768T0/1-890 DRKDPQETAK LFSVPDFVGD ACKAIASRVR GAVASVTFDD FHKNSARIIR BACU011918/1-890 DRKDPQETAK LFSVPDFVGD ACKAIASRVR GAVASVTFDD FHKNSARIIR 601 650 ENSP00000349977/1-893 TAVFGFETSE AKGPDGMALP RPRDQAVFPQ NGLVVSSVDV QSVEPVDQRT ENSBTAP00000010451/1-890 TAVFGFETQE TKGPDTMALP QPRDRAVFPQ NGLVVSSVDV QSVEPVDQRT ENSTTRP00000005142/1-892 TAVFGFETPE TKGSDSMALP QPRDRAVFPQ NGLVVSSVDV QSVEPVDQRT bmy_00768T0/1-890 TAVFGFETPE TKGPDSMALP QPRDQAVFPQ NGLVVSSVDV QSVEPVDQRT BACU011918/1-890 TAVFGFETPE TKGPDSMALP QPRDQAVFPQ NGLVVSSVDV QSVEPVDQRT 651 700 ENSP00000349977/1-893 RDALQRSVQL AIEITTNSQE AAAKHEAQRL EQEARGRLER QKILDQSEAE ENSBTAP00000010451/1-890 RDALQRSVQL AIEITTNSQE AAAKHEAQRL EQEARGRLER QKILDQSEAE ENSTTRP00000005142/1-892 RDALQRSVQL AIEITTNSQE AAARHEAQRL EQAARGRLER QKILDQSEAE bmy_00768T0/1-890 RDALQRSVQL AIEITTNSQE AAAKHEAQRL EQEARGRLER QKILDQSEAE BACU011918/1-890 RDALQRSVQL AIEITTNSQE AAAKHEAQRL EQEARGRLER QKILDQSEAE 701 750 ENSP00000349977/1-893 KARKELLELE ALSMAVESTG TAKAEAESRA EAARIEGEGS VLQAKLKAQA ENSBTAP00000010451/1-890 KARRELLELE ALSTAVESTG TAKAEAESRA EAARIEGEGA VLQAKLKAEA ENSTTRP00000005142/1-892 KARRELLELE ALSTAVESTG TAKAEAESRA EAARIEGEGA VLQAKLKAEA bmy_00768T0/1-890 KARRELLELE ALSTAVESTG TAKAEAESRA EAARIEGEGS VLQAKLKAEA BACU011918/1-890 KARRELLELE ALSTAVESTG TAKAEAESRA EAARIEGEGS VLQAKLKAEA 751 800 ENSP00000349977/1-893 LAIETEAELQ RVQKVRELEL VYARAQLELE VSKAQQLAEV EVKKFKQMTE ENSBTAP00000010451/1-890 LAIETEAELE RVKKVRELEL LYARAQLELE VSKAQQLAEV EVKKFKQMTE ENSTTRP00000005142/1-892 LAIETEAELQ RVKKVRELEL IYARAQLELE VSKAQQLAEV EVKKFKQMTE bmy_00768T0/1-890 LAIETEAELQ RVKKVRELEL VYARAQLELE VSKAQQLAEV EVKKFKQMTE BACU011918/1-890 LAIETEAELQ RVKKVRELEL VYARAQLELE VSKAQQLAEV EVKKFKQMTE 801 850 ENSP00000349977/1-893 AIGPSTIRDL AVAGPEMQVK LLQSLGLKST LITDGSTPIN LFNTAFGLLG ENSBTAP00000010451/1-890 ALGPSTIRDM AVAGPEMQVK LLQSLGLKST LITDGSTPIN LFNTALGLLG ENSTTRP00000005142/1-892 ALGPSTIRDL AVAGPEMQVK LLQSLGLKSA LITDGSAPIN LFNTALGLLG bmy_00768T0/1-890 ALGPSTIRDL AVAGPEMQVK LLQSLGLKST LITDGSAPIN LFNTALGLLG BACU011918/1-890 ALGPSTIRDL AVAGPEMQVK LLQSLGLKST LITDGSAPIN LFNTALGLLG 851 900 ENSP00000349977/1-893 MGPEGQPLGR RVASGPSPGE GISPQSAQAP QAPGDNHVVP VLR ENSBTAP00000010451/1-890 LGAEAQPPAK KPTGGPSVQE GLLPISTAAP LTLGNNQVVP --- ENSTTRP00000005142/1-892 LGSEAQPTTK KAASAPSAQE GLLLPSAAGP LTLGSNQVMP LL- bmy_00768T0/1-890 LGSEAQPPAK KAASGPSTQE GLLLPSTAGP LTLGSNQVMP --- BACU011918/1-890 LGSEAQPLAK KAASGPSAQE GLLLPSTAGP LTLGSNQVMP ---