KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:12 2014 Check: 00 .. Name: ENSTTRP00000016030/1-707 Len: 724 Check: 2699 Weight: 1.00 Name: ENSP00000254051/1-715 Len: 724 Check: 5358 Weight: 1.00 Name: bmy_13563T0/1-671 Len: 724 Check: 8100 Weight: 1.00 Name: BACU007037/1-684 Len: 724 Check: 2376 Weight: 1.00 Name: ENSBTAP00000010461/1-716 Len: 724 Check: 6289 Weight: 1.00 // 1 50 ENSTTRP00000016030/1-707 MSQVMSSPLL AGGPAVGLAS CEEPRRALHP APSPGLPPQC PY-YTTEGWG ENSP00000254051/1-715 MSQVMSSPLL AGGHAVSLAP CDEPRRTLHP APSPSLPPQC SY-YTTEGWG bmy_13563T0/1-671 MVRV-PEPRG VGGWQTGAEG AISHR--ICP RFHPGKPEAG LTALQREKLG BACU007037/1-684 MSQVMSSPLL AGGPAVGLAP CEEPRRALHP APSPGLPPQC LY-YTTEGWG ENSBTAP00000010461/1-716 MSQVMSSPLL AGGPAVGLAP CEEPRRVLHP APSPSLPPPC PY-YTTEGWG 51 100 ENSTTRP00000016030/1-707 AQALMAPMPC K------EPP SRLQQAPQAG AKAGCLLQSP GEQASGALED ENSP00000254051/1-715 AQALMAPVPC M------GPP GRLQQAPQVE AKATCFLPSP GEKALGTPED bmy_13563T0/1-671 NPHLPPPFLE QHRGQLPSPT SQEERCPSSP WENHRVPHSR KKQ------- BACU007037/1-684 AQALMAPMPS K------EPP SRLQQAPQAG AKASCLPQSP GEQASGALED ENSBTAP00000010461/1-716 AQALMAPMPC K------GPP GRLQPAPQAG ANASCLLKAP GEQVSGAQED 101 150 ENSTTRP00000016030/1-707 LDSYIDFSLE SLNQMILELD PTFQLLPPGP GGPWAE-PTQ STTSRRKKED ENSP00000254051/1-715 LDSYIDFSLE SLNQMILELD PTFQLLPPGT GGSQAE-LAQ STMSMRKKEE bmy_13563T0/1-671 ---------- GLRTRVLD-- --------AP IGEWKEHQSE SAAWGAKRPT BACU007037/1-684 LDSYIDFSLE SLNQMILELD PTFQLLPPGP GGPWAE-PTQ STTSRRKKEE ENSBTAP00000010461/1-716 LDSYIDFSLE SLNQMILELD PTFQLLPPGP GGPEAQ-PTQ STTLGKKKEE 151 200 ENSTTRP00000016030/1-707 PEALXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254051/1-715 SEALDIKYIE VTSARSRCHD GPQHCSSPSV TPPFGSLRSG GLLLSRDVPR bmy_13563T0/1-671 ---------- -----AQCHD GPQSCSSPSV TPPFGSPGRG ALLLSRDIPR BACU007037/1-684 PEALDIKYIE VTSTRSRCHD GPQSCSSPSV TPPFGSPGRG ALLLSRDIPR ENSBTAP00000010461/1-716 PEALDIKYIE VTSTRSRCHD GPRSCCSPSV TPPFGSPRTG GLLLSRDLPR 201 250 ENSTTRP00000016030/1-707 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSPSIS IPVTGNKASG ENSP00000254051/1-715 ETRSSSESLI FSGNQGRGHQ RPLPPSEGLS PRPPNSPSIS IPCMGSKASS bmy_13563T0/1-671 ETRSSSESLI FSGSQGRGHQ SPSPPSGAPS SHPPPSPSNS IPGMGNKASG BACU007037/1-684 ETRSSSESLI FSGSQGKGHQ RPSPPSGAPS PHPPPSPSIS IPGMGNKASG ENSBTAP00000010461/1-716 ETRSSSESLI FSGSQGRGHQ HPAPPSAVPS SHPPTSPSIS IPGMGSKASG 251 300 ENSTTRP00000016030/1-707 HHG-CSPMVA SPASEKRLGS -------RVS MLSASPASDV SYVFGSSQSL ENSP00000254051/1-715 PHGLGSPLVA SPRLEKRLGG LAPQRGSRIS VLSASPVSDV SYMFGSSQSL bmy_13563T0/1-671 RHGLGSPLVA SPALEKGLGG -------RVS MLSASPASDV SYVFG-SQSF BACU007037/1-684 RHGLGSPLVA SPALEKGLGG -------RVS MLSASPASDV SYVFG-SQSF ENSBTAP00000010461/1-716 PHGLGSPLVA SPSLEKGLGG QGPQLSSRVS MLSGSPASDI SYVFGSSQSL 301 350 ENSTTRP00000016030/1-707 LRSSISSHQS SSKSLESPTS SSSSLHSLGP GSLYTRASDL QVPSHPTPST ENSP00000254051/1-715 LHSSNSSHQS SSRSLESPAN SSSSLHSLGS VSLCTRPSDF QAPRNPTLTM bmy_13563T0/1-671 LRSSISSHQS SSRSLESPAN SSSSLHSLGP VSLYTRASDL QVPSNPTPSM BACU007037/1-684 LRSSISSHQS SSRSLESPAG SSSSLHSLGP VSLYTRASDL QVPSNPTPSM ENSBTAP00000010461/1-716 LHSSISSHQS SSRSLESPSS SSSSLNNLGP VSLYTRASDL QVPSNATPSM 351 400 ENSTTRP00000016030/1-707 GQPRATHSSP LAEEHASSCP PSITNSMVDI PIVLINGCPE PGSPPSQRTP ENSP00000254051/1-715 GQPRTPHSPP LAKEHASSCP PSITNSMVDI PIVLINGCPE PGSSPPQRTP bmy_13563T0/1-671 GQPRATHSSP LAKAHASSCP PSITNSMVDI PIVLINGCPE PGSPPSQRTP BACU007037/1-684 GQPRATHSSP LAKEHASSCP PSITNSMVDI PIVLINSCPE PGSPPSQRTP ENSBTAP00000010461/1-716 GQPRATRSPP LAKEHASSCP PSITNSMTDI PIVLINGFPE PGSPPSQRTP 401 450 ENSTTRP00000016030/1-707 GHQDFVCPGA TSSSNPCPAT RSHSQTLPDA PLTTSPEGPA RDMQPTMKFV ENSP00000254051/1-715 GHQNSVQPGA ASPSNPCPAT RSNSQTLSDA PFTTCPEGPA RDMQPTMKFV bmy_13563T0/1-671 GHQDFVCPGA TSSSNPCPAT RSHSQTLPDA SLTTSPEGPA RDMQPTMKFV BACU007037/1-684 GHQDFVCPGA TSSSNPCPAT RSHSQTLPDA PLTTSPEGPA RDMQPTMKFV ENSBTAP00000010461/1-716 GPQDFVRPGA TSSSMPCPAT RSHSQTLPEA PPTASPEGPA RDMQPTMKFV 451 500 ENSTTRP00000016030/1-707 MDTSKYWFKR SITREQAIEL LRKEEPGAFI VRDSSSYRGS FGLALKVQEA ENSP00000254051/1-715 MDTSKYWFKP NITREQAIEL LRKEEPGAFV IRDSSSYRGS FGLALKVQEV bmy_13563T0/1-671 MDTSKYWFKP SITREQAIEL LRKEEPGAFI VRDSSSYRGS FGLALKVQEA BACU007037/1-684 MDTSKYWFKP SITREQAIEL LRKEEPGAFI VRDSSSYRGS FGLALKVQEA ENSBTAP00000010461/1-716 MDTSKYWFKP SISREQAIEL LRKEEPGAFI VRDSSSYRGS FGLALKVQEA 501 550 ENSTTRP00000016030/1-707 PAPAQNRTGE DNSDLIRHFL LESSAKGVHL KGADEEPYFG SLSAFVCQHS ENSP00000254051/1-715 PASAQSRPGE DSNDLIRHFL IESSAKGVHL KGADEEPYFG SLSAFVCQHS bmy_13563T0/1-671 PAPAQNQSGE DGSDLIRHFL IESSAKGVHL KGANEEPYFG SLSAFVCQHS BACU007037/1-684 PAPAQNRSGE DGNDLIRHFL IESSAKGVHL KGADEEPHFG SLSAFVCQHS ENSBTAP00000010461/1-716 PTPAQSRPGE DSSDLIRHFL IESSAKGVHL KGADEEPYFG SLSAFVCQHS 551 600 ENSTTRP00000016030/1-707 IMALALPCKL VIPKKXXXXX XXXXX-XXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254051/1-715 IMALALPCKL TIPQRELGGA DGASD-STDS PASCQKKSAG CHTLYLSSVS bmy_13563T0/1-671 IMALALPCKL IIPKKELGGG DGASDPSADG GASCLKKPAG CHALYLSSVS BACU007037/1-684 IMALALPCKL IIPKK----- ---------- ---------G CHALYLSSVS ENSBTAP00000010461/1-716 IMALALPCKL VIPQKELGGG DGASDPSADG QASCLKKSAG CHALYLSSVS 601 650 ENSTTRP00000016030/1-707 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVFFR ENSP00000254051/1-715 VETLTGALAV QKAISTTFER DILPTPTVVH FKVTEQGITL TDVQRKVFFR bmy_13563T0/1-671 VETLSGALAV QKAISTTLER DVLPTPTVVH FKVTEQGITL TDIQRKVFFR BACU007037/1-684 VETLSGALAV QKAISTTLER DVLPTPTVVH FKVTEQGITL TDIQRKVFFR ENSBTAP00000010461/1-716 VETLSGALAV EKAISATLER DVLPTPTVVH FKVTEQGITL TDVQRKVFFR 651 700 ENSTTRP00000016030/1-707 RHYPFATLRF CGMDPKQRKW QKYCKPSRIF GFVAKSQTES QENVCHLFAE ENSP00000254051/1-715 RHYPLTTLRF CGMDPEQRKW QKYCKPSWIF GFVAKSQTEP QENVCHLFAE bmy_13563T0/1-671 RHYPFATLRF CGMDPKQRKW QKYCKPSRIF GFVAKSQTES QENVCHLFAE BACU007037/1-684 RHYPFATLRF CGMDPKQRKW QKYCKPSRIF GFVAKSQTES QENVCHLFAE ENSBTAP00000010461/1-716 RHYPLATLRF CGMDPEQRKW QKYCKPSRIF GFVAKSQTES QENVCHLFAE 701 750 ENSTTRP00000016030/1-707 YDTVQPASQV ISLVGALLQD PERM ENSP00000254051/1-715 YDMVQPASQV IGLVTALLQD AERM bmy_13563T0/1-671 YDTVQPASQV ISLVGALLQD PERM BACU007037/1-684 YDTVQPASQV ISLVGALLQD PERM ENSBTAP00000010461/1-716 YDTLQPASQV IRLVGALLQD PERM