KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:41:15 2014 Check: 00 ..
Name: BACU014631/1-1219 Len: 1290 Check: 1820 Weight: 1.00
Name: ENSTTRP00000000194/1-898 Len: 1290 Check: 2324 Weight: 1.00
Name: bmy_13278T0/1-783 Len: 1290 Check: 3405 Weight: 1.00
Name: ENSP00000336712/1-898 Len: 1290 Check: 4160 Weight: 1.00
Name: ENSBTAP00000010491/1-854 Len: 1290 Check: 63 Weight: 1.00
//
1 50
BACU014631/1-1219 ---------- ---------- -MKITTLVRE HLVPFRRFVK ILLRFLDSDV
ENSTTRP00000000194/1-898 ---------- ---------- ---------- ---------M VWDRXXXXXX
bmy_13278T0/1-783 SEASGERRGR SGGEEGGAWR GKPSGLCTGS NICSVSSCVW LYLQQTKMEY
ENSP00000336712/1-898 ---------- ---------- ---------- ---------M VWDRQTKMEY
ENSBTAP00000010491/1-854 ---------- ---------- ---------- ---------- ----------
51 100
BACU014631/1-1219 LDRPLNSMIP KFLQFFKHSS PKIRSHAVAC VNQFIISRTQ ALMLHIDSFI
ENSTTRP00000000194/1-898 XXXXXXXXXX XXXXXXXXXX X-----XXXX XXXXXXXKLE QLNQYPD-FN
bmy_13278T0/1-783 EWKPDEQGLQ QILQLLKESQ S-----PDTT IQRTVQQKLE QLNQYPD-FN
ENSP00000336712/1-898 EWKPDEQGLQ QILQLLKESQ S-----PDTT IQRTVQQKLE QLNQYPD-FN
ENSBTAP00000010491/1-854 ---------- ---------- ---------- -------KLE QLNQYPD-FN
101 150
BACU014631/1-1219 ENL-FALAGD EEPEVQKNVC QALVMLLEVR MDRLLPHMHN IVEGVVEEDE
ENSTTRP00000000194/1-898 NYLIFVLTKL KSEDEPTRSL SGLILKNNVK -----AHFQN FPNGVTD---
bmy_13278T0/1-783 NYLIFVLTKL KSEDEPTRSL SGLILKNNVK -----AHFQN FPNGVTD---
ENSP00000336712/1-898 NYLIFVLTKL KSEDEPTRSL SGLILKNNVK -----AHFQN FPNGVTD---
ENSBTAP00000010491/1-854 NYLIFVLTKL KSEDEPTRSL SGLILKNNVK -----AHFQN FPNGVTD---
151 200
BACU014631/1-1219 TIPQSEQDTR PRFHRSRTVA QQHDEDGIEE EDDDDDEVDN DDTISDWNLR
ENSTTRP00000000194/1-898 ---------- --FIKSECLN NIGDSS---- ---------- ----------
bmy_13278T0/1-783 ---------- --FIKSECLN NIGDSS---- ---------- ----------
ENSP00000336712/1-898 ---------- --FIKSECLN NIGDSS---- ---------- ----------
ENSBTAP00000010491/1-854 ---------- --FIKSECLN NIGDSS---- ---------- ----------
201 250
BACU014631/1-1219 KCSAAALDVL ANVYRDELLP HILPLLKELL CCHEWVVKES GILVLGTIAG
ENSTTRP00000000194/1-898 ---------- ---------- ---PLIRATV ---------- GILIT-TIAS
bmy_13278T0/1-783 ---------- ---------- ---PLIRATV ---------- GILIT-TIAS
ENSP00000336712/1-898 ---------- ---------- ---PLIRATV ---------- GILIT-TIAS
ENSBTAP00000010491/1-854 ---------- ---------- ---PLIRATV ---------- GILIT-TIAS
251 300
BACU014631/1-1219 DCMLGMIPYR PELIPPLIQC LSDKKALVHS ITCWTLSRYA HGVVSQPPDT
ENSTTRP00000000194/1-898 K---GELQNW PDLLPKL--- ---------- ---------- ----------
bmy_13278T0/1-783 K---GELQNW PDLLPKL--- ---------- ---------- ----------
ENSP00000336712/1-898 K---GELQNW PDLLPKL--- ---------- ---------- ----------
ENSBTAP00000010491/1-854 K---GELQNW PDLLPKL--- ---------- ---------- ----------
301 350
BACU014631/1-1219 YLKPLMTELL KRILDSNKRV QEAACSAFAT LEEEACTEPV PYLAYILDTL
ENSTTRP00000000194/1-898 ---------- ---------- ----CS---- ---------- ----------
bmy_13278T0/1-783 ---------- ---------- ----CS---- ---------- ----------
ENSP00000336712/1-898 ---------- ---------- ----CS---- ---------- ----------
ENSBTAP00000010491/1-854 ---------- ---------- ----CS---- ---------- ----------
351 400
BACU014631/1-1219 VFAFSKYQHK NLLIFYDAIG TLADSVGHHL NKPEYIQMLM PPLIQKWNML
ENSTTRP00000000194/1-898 ---------- ---------- ---------- ---------- --------LL
bmy_13278T0/1-783 ---------- ---------- ---------- ---------- --------LL
ENSP00000336712/1-898 ---------- ---------- ---------- ---------- --------LL
ENSBTAP00000010491/1-854 ---------- ---------- ---------- ---------- --------LL
401 450
BACU014631/1-1219 KDEDKDLFPL LECLSSVATA LQSGFHPYCE PVYQRCVNLV QKTLAQAMLN
ENSTTRP00000000194/1-898 DSED------ ---------- ---------- --YNTC---- ----------
bmy_13278T0/1-783 DSED------ ---------- ---------- --YNTC---- ----------
ENSP00000336712/1-898 DSED------ ---------- ---------- --YNTC---- ----------
ENSBTAP00000010491/1-854 DSED------ ---------- ---------- --YNTC---- ----------
451 500
BACU014631/1-1219 NAQRDQYEAP DKVFLIVALD LLSGLAEGLG GNIEQLVARS NTLTLMYQCM
ENSTTRP00000000194/1-898 ---------- ---------- ------EGAF GALQKICEDS AEI-------
bmy_13278T0/1-783 ---------- ---------- ------EGAF GALQKICEDS AEI-------
ENSP00000336712/1-898 ---------- ---------- ------EGAF GALQKICEDS AEI-------
ENSBTAP00000010491/1-854 ---------- ---------- ------EGAF GALQKICEDS AEI-------
501 550
BACU014631/1-1219 QDKMPDVRQS SFTLLGDLTK ACFQHVKPCI ADFMPILGTY LNPEFISVCN
ENSTTRP00000000194/1-898 ---------- ---------- ---------- ---------- ----------
bmy_13278T0/1-783 ---------- ---------- ---------- ---------- ----------
ENSP00000336712/1-898 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000010491/1-854 ---------- ---------- ---------- ---------- ----------
551 600
BACU014631/1-1219 NATWAIGEIS IQMDSDVLDR PLNSMIPKFL QFFKHSSPKI RSHAVACVNQ
ENSTTRP00000000194/1-898 ---------- --LDSDVLDR PLNIMIPKFL QFFKHSSPKI RSHAVACVNQ
bmy_13278T0/1-783 ---------- --LDSDVLDR PLNIMIPKFL QFFKHSSPKI RSHAVACVNQ
ENSP00000336712/1-898 ---------- --LDSDVLDR PLNIMIPKFL QFFKHSSPKI RSHAVACVNQ
ENSBTAP00000010491/1-854 ---------- --LDSDVLDR PLNIMIPKFL QFFKHSSPKI RSHAVACVNQ
601 650
BACU014631/1-1219 FIISRTQALM LHIDSFIENL FALAGDEEPE VQKNVCQALV MLLEVRMDRL
ENSTTRP00000000194/1-898 FIISRTQALM LHIDSFIENL FALAGDEEPE VRKNVCRALV MLLEVRMDRL
bmy_13278T0/1-783 FIISRTQALM LHIDSFIENL FALAGDEEPE VRKNVCRALV MLLEVRMDRL
ENSP00000336712/1-898 FIISRTQALM LHIDSFIENL FALAGDEEPE VRKNVCRALV MLLEVRMDRL
ENSBTAP00000010491/1-854 FIISRTQALM LHIDSFIENL FALAGDEEPE VRKNVCRALV MLLEVRMDRL
651 700
BACU014631/1-1219 PPHMHNIVEY MLQRPQDQGE NVALETCEFW LTLAKQPICK DVLIRHLPKL
ENSTTRP00000000194/1-898 LPHMHNIVEY MLQRTQDQDE NVALEACEFW LTLAEQPICK DVLMRHLPKL
bmy_13278T0/1-783 LPHMHNIVEY MLQRTQDQDE NVALEACEFW LTLAEQPICK DVLIRHLPKL
ENSP00000336712/1-898 LPHMHNIVEY MLQRTQDQDE NVALEACEFW LTLAEQPICK DVLVRHLPKL
ENSBTAP00000010491/1-854 LPHMHNIVEY MLQRTQDQDE NVALEACEFW LTLAEQPICK DVLIRHLPKL
701 750
BACU014631/1-1219 IPVLVNGMKY SDIDIILLKG VVEEDETIPQ SEQDTRPRFH RSRTVAQQHD
ENSTTRP00000000194/1-898 IPVLVNGMKY SDIDIILLKG DVEEDETIPD SEQDIRPRFH RSRTVAQQHD
bmy_13278T0/1-783 IPVLVNGMKY SDIDIILLKY NIHMNGST-- --------YS ITKTLL----
ENSP00000336712/1-898 IPVLVNGMKY SDIDIILLKG DVEEDETIPD SEQDIRPRFH RSRTVAQQHD
ENSBTAP00000010491/1-854 IPVLVNGMKY SDIDIILLKG DVEEDETIPD SEQDIRPRFH RSRTVAQQHD
751 800
BACU014631/1-1219 EDGIEEEDDD DDEVDDDDTI SDWNLRKCSA AALDVLANVY RDELLPHILP
ENSTTRP00000000194/1-898 EDGIEEEDDD DDEIDDDDTI SDWNLRKCSA AALDVLANVY RDELLPHILP
bmy_13278T0/1-783 ---------- ---------- ----MRKCSA AALDVLANVY RDELLPHILP
ENSP00000336712/1-898 EDGIEEEDDD DDEIDDDDTI SDWNLRKCSA AALDVLANVY RDELLPHILP
ENSBTAP00000010491/1-854 EDGIEEEEDD DDEIDDDDTI SDWNLRKCSA AALDVLANVY RDELLPHILP
801 850
BACU014631/1-1219 LLKELLCCHE WVVKESGILV LGTIAGDCML GMIPYRPELI PPLIQCLSDK
ENSTTRP00000000194/1-898 LLKELLFHHE WVVKESGILV LGAIAEGCMQ GMIPYLPELI PHLIQCLSDK
bmy_13278T0/1-783 LLKELLFHHE WVVKESGILV LGAIAEGCMQ GMIPYLPELI PHLIQCLSDK
ENSP00000336712/1-898 LLKELLFHHE WVVKESGILV LGAIAEGCMQ GMIPYLPELI PHLIQCLSDK
ENSBTAP00000010491/1-854 LLKELLFHHE WVVKESGILV LGAIAEGCMQ GMIPYLPELI PHLIQCLSDK
851 900
BACU014631/1-1219 KALVHSITCW TLSRYAHGVV SQPPDTYLKP LMTELLKRIL DSNKRVQEAA
ENSTTRP00000000194/1-898 KALVRSITCW TLSRYAHWVV SQPPDTYLKP LMTELLKRIL DSNKRVQEAA
bmy_13278T0/1-783 KALVRSITCW TLSRYAHWVV SQPPDTYLKP LMTELLKRIL DSNKRVQEAA
ENSP00000336712/1-898 KALVRSITCW TLSRYAHWVV SQPPDTYLKP LMTELLKRIL DSNKRVQEAA
ENSBTAP00000010491/1-854 KALVRSITCW TLSRYAHWVV SQPPDTYLKP LMTELLKRIL DSNKRVQEAA
901 950
BACU014631/1-1219 CSAFATLEEE ACTEPVPYLA YILDTLVFAF SKYQHKNLLI FYDAIGTLAD
ENSTTRP00000000194/1-898 CSAFATLEEE ACTELVPYLA YILDTLVFAF SKYQHKNLLI LYDAIGTLAD
bmy_13278T0/1-783 CSAFATLEEE ACTELVPYLA YILDTLVFAF SKYQHKNLLI LYDAIGTLAD
ENSP00000336712/1-898 CSAFATLEEE ACTELVPYLA YILDTLVFAF SKYQHKNLLI LYDAIGTLAD
ENSBTAP00000010491/1-854 CSAFATLEEE ACTELVPYLA YILDTLVFAF SKYQHKNLQI LYNYYDSGAF
951 1000
BACU014631/1-1219 SVGHHLNKPE YIQMLMPPLI QKWNMLKDED KDLFPLLECL SSVATALQSG
ENSTTRP00000000194/1-898 SVGHHLNKPE YIQMLMPPLI QKWNMLKDED KDLFPLLECL SSVATALQSG
bmy_13278T0/1-783 SVGHHLNKPE YIQMLMPPLI QKWNMLKDED KDLFPLLECL SSVATALQSG
ENSP00000336712/1-898 SVGHHLNKPE YIQMLMPPLI QKWNMLKDED KDLFPLLECL SSVATALQSG
ENSBTAP00000010491/1-854 CVFHHCN-LE YIQMLMPPLI QKWNMLKDED KDLFPLLECL SSVATALQSG
1001 1050
BACU014631/1-1219 FHPYCEPVYQ RCVNLVQKTL AQAMLNNAQR DQYEAPDKVF LIVALDLLSG
ENSTTRP00000000194/1-898 FLPYCEPVYQ RCVNLVQKTL AQAMLNNAQP DQYEAPDKDF MIVALDLLSG
bmy_13278T0/1-783 FLPYCEPVYQ RCVNLVQKTL AQAMLNNAQP DQYEAPDKDF MIVALDLLSG
ENSP00000336712/1-898 FLPYCEPVYQ RCVNLVQKTL AQAMLNNAQP DQYEAPDKDF MIVALDLLSG
ENSBTAP00000010491/1-854 FLPYCEPVYQ RCVNLVQKTL AQAMLNNAQP DQYEAPDKDF MIVALDLLSG
1051 1100
BACU014631/1-1219 LAEGLGGNIE QLVARSNTLT LMYQCMQDKM PDVRQSSFTL LGDLTKACFQ
ENSTTRP00000000194/1-898 LAEGLGGNIE QLVARSNILT LMYQCMQDKM PEVRQSSFAL LGDLTKACFQ
bmy_13278T0/1-783 LAEGLGGNIE QLVARSNILT LMYQCMQDKM PEVRQSSFAL LGDLTKACFQ
ENSP00000336712/1-898 LAEGLGGNIE QLVARSNILT LMYQCMQDKM PEVRQSSFAL LGDLTKACFQ
ENSBTAP00000010491/1-854 LAEGLGGNIE QLVARSNILT LMYQCMQDKM PEVRQSSFAL LGDLTKACFQ
1101 1150
BACU014631/1-1219 HVKPCIADFM PILGTYLNPE FISVCNNATW AIGEISIQMG IEMQPYIPMV
ENSTTRP00000000194/1-898 HVKPCIADFM PILGTNLNPE FISVCNNATW AIGEISIQMG IEMQPYIPMV
bmy_13278T0/1-783 HVKPCIADFM PILGTNLNPE FISVCNNATW AIGEISIQMG IEMQPYIPMV
ENSP00000336712/1-898 HVKPCIADFM PILGTNLNPE FISVCNNATW AIGEISIQMG IEMQPYIPMV
ENSBTAP00000010491/1-854 HVKPCIADFM PILGTNLNPE FISVCNNATW AIGEISIQMG IEMQPYIPMV
1151 1200
BACU014631/1-1219 LHQFC---TR PNTPKTLLEN TAITVGCLGY VCPQDVAPML QQFIRPWCTS
ENSTTRP00000000194/1-898 LHQLVEIINR PNTPKTLLEN TAITIGRLGY VCPQEVAPML QQFIRPXXXX
bmy_13278T0/1-783 LHQLVEIINR PNTPKTLLEN T--------- ---------- ----------
ENSP00000336712/1-898 LHQLVEIINR PNTPKTLLEN TAITIGRLGY VCPQEVAPML QQFIRPWCTS
ENSBTAP00000010491/1-854 LHQLVEIINR PNTPKTLLEN TAITIGRLGY VCPQEVAPML QQFIRPWCTS
1201 1250
BACU014631/1-1219 LRNIRDNEEK DSAFCGICTM ISVNSSGVIQ DFIFFCDALA SSKR------
ENSTTRP00000000194/1-898 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DFIFFCDAVA SWINPKDDLR
bmy_13278T0/1-783 ---------- ---------- ------GTI- ---------- ----------
ENSP00000336712/1-898 LRNIRDNEEK DSAFRGICTM ISVNPSGVIQ DFIFFCDAVA SWINPKDDLR
ENSBTAP00000010491/1-854 LRNIRDNEEK DSAFRGICTM ISVNPSGVIQ DFIFFCDAVA SWINPKDDLR
1251 1300
BACU014631/1-1219 ---------- ---------- ---------- ----------
ENSTTRP00000000194/1-898 DMFCKILHGF KNQVGDENWR RFSDQFPLPL KERLAAFYGV
bmy_13278T0/1-783 ---------- ---------- ---------- ----------
ENSP00000336712/1-898 DMFCKILHGF KNQVGDENWR RFSDQFPLPL KERLAAFYGV
ENSBTAP00000010491/1-854 DMFCKILHGF KNQVGDENWR RFSDQFPLPL KERLAAFYGV