KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:19 2014 Check: 00 .. Name: ENSP00000235532/1-379 Len: 389 Check: 8211 Weight: 1.00 Name: ENSBTAP00000010509/1-379 Len: 389 Check: 128 Weight: 1.00 Name: ENSTTRP00000011326/1-321 Len: 389 Check: 7730 Weight: 1.00 Name: bmy_10798T0/1-263 Len: 389 Check: 3236 Weight: 1.00 Name: BACU009676/1-321 Len: 389 Check: 3148 Weight: 1.00 // 1 50 ENSP00000235532/1-379 MSVRTLPLLF LNLGGEMLYI LDQRLRAQNI PGDKARK--- -------VLN ENSBTAP00000010509/1-379 MSMRTLPLLF LNLGGEMLYI LDQRLRAQNI PGDKARK--- -------VMN ENSTTRP00000011326/1-321 MSVRTLPLLF LNLGGEMLYI LDQRLRAQNI PGDKARKDEW TEVDRKRVLN bmy_10798T0/1-263 MSVRTLPLLF LNLGGEMLYI LDQRLRAQNI PGDKARKDEW TEVDRKRVLN BACU009676/1-321 MSVRTLPLLF LNLGGEMLYI LDQRLRAQNI PGDKARKDEW TEVDRKRVLN 51 100 ENSP00000235532/1-379 DIISTMFNRK FMEELFKPQE LYSKKALRTV YERLAHASIM KLNQASMDKL ENSBTAP00000010509/1-379 DIISTMFNQK FMDELFKPQE LYSKKALRTV YDRLAHASIM RLNQASMDKL ENSTTRP00000011326/1-321 DIISTMFNRK FMEELFKPQE LYSK---LTV YDRLAH--IM RLNQS---DL bmy_10798T0/1-263 DIISTMFNRK FMEELFKPQE LYSKKALRTV YDRLAHASIM RLNQASMDKL BACU009676/1-321 DIISTMFNRK FMEELFKPQE LYSKKALRTV YDRLAHASIM RLNQASMDKL 101 150 ENSP00000235532/1-379 YDLMTMAFKY QVLLCPRPKD VLLVTFNHLD TIKGFIRDSP TILQQVDETL ENSBTAP00000010509/1-379 YDLMTMAFKY QVLLCPRPKD VLLVTLNHLD AIKGLIQDSP TILHQVDKTF ENSTTRP00000011326/1-321 YDLMTMAFKY QVLLCPRPKD VLLVTFNHLD AIKGFIRDSP TILHQVDETF bmy_10798T0/1-263 YDLMTMAFKY QVLLCPRPKD VLLVTFNHLD AIKGFIQDSP TILHQVDETF BACU009676/1-321 YDLMTMAFKY QVLLCPRPKD VLLVTFNHLD AIKGFIQDSP TILHQVDETF 151 200 ENSP00000235532/1-379 RQLTEIYGGL SAGEFQLIRQ TLLIFFQDLH IRVSMFLKDK VQNNNGRFVL ENSBTAP00000010509/1-379 RQLTDIYGGL SAGEFQLIRQ TLLIFFQDLH IRVSIFLKDK VQNSSGRFVL ENSTTRP00000011326/1-321 QQLTEIYGGL SAGEFQLIRX XXXXXXXXXX XXVSIFLKDK VQNSNGRFVL bmy_10798T0/1-263 QQLTETYGGL SAGEFQLIRQ TLLIFFQDLH IRIHSMQSPD VSKGHLRF-- BACU009676/1-321 QQLTETYGGL SAGEFQLIRQ TLLIFFQDLH IRVSIFLKDK VQNSSGRFVL 201 250 ENSP00000235532/1-379 PVSGPVPWGT EVPGLIRMFN NKGEEVKRIE FKHGGNYVPA PKEGSFELYG ENSBTAP00000010509/1-379 PVSGPVPWGT EVPGLIRTFN NKGKEVKRTE FKHGGSYVAA PKEGSLELYG ENSTTRP00000011326/1-321 PVSGPLPWGT KVPGLIRTFN NKGEEVRKVE FKHGGSYVAA PKEGSFELYG bmy_10798T0/1-263 ---------- --PNI----- ---------- ---------- ---------- BACU009676/1-321 PVSGPLPWGT KVPGLIRTFN HKGEEVRKAE FKHGGSYVAA PKEGSFELYG 251 300 ENSP00000235532/1-379 DRVLKLGTNM YSVNQPVETH VSGSSKNLAS WTQESIAPNP LAKEELNFLA ENSBTAP00000010509/1-379 DRVLKLGTNM YSVNRPVETH MSAASKNLAS QTQESIVPNP LAKEELNLLA ENSTTRP00000011326/1-321 DRVLKLGTNM YSVNRPVETH MSGASENLAA QTQESIAPNP LAKEELNLLA bmy_10798T0/1-263 ---------R YSVNRPVETH MSGASENLAA QTQD------ --QQTNKELA BACU009676/1-321 DRVLKLGTNM YSVNRPVETH MSGASENLAA QTQD------ --QQTNEELA 301 350 ENSP00000235532/1-379 RLMGGMEIKK PSGPEPGFRL NLFTTDEEEE QAALTRPEEL SYEVINIQAT ENSBTAP00000010509/1-379 RLIGGMEIQK PSGPEPGFRL NLFTTDEEEE QAALTRPEEL SYKVINIQAT ENSTTRP00000011326/1-321 RLIGGMEIKK PSGPEPGFRL NLFTTDEEE- ---------- ---------- bmy_10798T0/1-263 RIMG------ ---------- ---------- ---------- ---------- BACU009676/1-321 RIMG------ ---------- ---------- ---------- ---------- 351 400 ENSP00000235532/1-379 QDQQRSEELA RIMGEFEITE QPRLSTSKGD DLLAMMDEL ENSBTAP00000010509/1-379 QDQQTNQELV RIMGEFEITD QSRQSSSKGD DWLAMMDEL ENSTTRP00000011326/1-321 ---------- ---------- ---------- --------- bmy_10798T0/1-263 ---------- ----EFEILD QPRRSASKGD DLLAMMDEL BACU009676/1-321 ---------- ----EFEILD QPRRSASKGD DLLAMMDEL