KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:21 2014 Check: 00 .. Name: ENSP00000353942/1-874 Len: 877 Check: 1319 Weight: 1.00 Name: ENSBTAP00000010526/1-872 Len: 877 Check: 7041 Weight: 1.00 Name: bmy_12162T0/1-740 Len: 877 Check: 4471 Weight: 1.00 Name: ENSTTRP00000009548/1-784 Len: 877 Check: 3672 Weight: 1.00 Name: BACU001827/1-866 Len: 877 Check: 7926 Weight: 1.00 // 1 50 ENSP00000353942/1-874 MEVLREKVEE EEEAEREEAA EWAEWARMEK MMRPVEVRKE EITLKQETLR ENSBTAP00000010526/1-872 MEVLKEKVEE EEAAEREEAA ERAE--RGEK TKRPMEVRRE ETTMTQEMLR bmy_12162T0/1-740 MEVLKEKVEE EEEAER---- --AE--RGEK MMRPMEVRKE ETIMTQEMLR ENSTTRP00000009548/1-784 QMESEEKERE SRAAEQRE-- --AE--RAKK MMRPMEVRKE DTT-TQEMLR BACU001827/1-866 MEVLKEKVEE EEEAER---- --AE--RGEK MMRPMEVRKE ETIMTQEMLR 51 100 ENSP00000353942/1-874 DLEKKLSEIQ ITVSAELPAF TKDTIDISKL PISYKTNTPK EEHLLQVADN ENSBTAP00000010526/1-872 DLERKLSEIE VSVPEKLLAF TKDTIDTSKL PLSYQSNTLK EEHLLQVADN bmy_12162T0/1-740 DLERKLSEIE VSIPEKPSTF TKDAIDISKL PLSYQSNTPK EEHLLQVADN ENSTTRP00000009548/1-784 DLERKLSEIE VSIPEKPSTF TKDAIDTSKL PLSYQSNTPK EEHLLQVADN BACU001827/1-866 DLERKLSKIE VSIPEKPSTF TKDAIDISKL PLSYQSNTPK EEHLLQVADN 101 150 ENSP00000353942/1-874 FSRQYSHLCP DRVPLFLHPL NECEVPKFVS TTLRPTLMPY PELYNWDSCA ENSBTAP00000010526/1-872 FSRQYSHLCP DRVPLFLHPL NECEVPKFVS TTIRPTLMPY PELYNWDTCA bmy_12162T0/1-740 FSRQYSHLCP DRVPLFLHPV NECEVPKFVS TTIRPTLMPY PELYNWDTCA ENSTTRP00000009548/1-784 FSRQYSHLCP DRVPLFLYPV NECSVPKFVS TTIRPTLMPY PELYNWDTCA BACU001827/1-866 FSRQYSHLCP DRVPLFLHPV NECEVPKFVS TTIRPTLMPY PELYNWDTCA 151 200 ENSP00000353942/1-874 QFVSDFLTMV PLPDPLKPPS HLYSSTTVLK YQKGNCFDFS TLLCSMLIGS ENSBTAP00000010526/1-872 QFISDFLSMV PLPDPLKPPL YLYSSTTVLK YQKGNCFDFS TLLCSMLIGA bmy_12162T0/1-740 QFVSDFLSAV PLPDPLKPPS YLYSSTTVLK YQKGNCFDFS TLLCSMLIGA ENSTTRP00000009548/1-784 QFVSDFLSAV PLPDPLKPPS YLYSSTTVLK YQEGNCFDFS TLLCSMLLGA BACU001827/1-866 QFVSDFLYAV PLPDPLKPPS YLYSSTTVLK YQKGNCFDFS TLLCSMLIGA 201 250 ENSP00000353942/1-874 GYDAYCVNGY GSLDLCHMDL TREVCPLTVK PKETIKKEEK VLPKKYTIKP ENSBTAP00000010526/1-872 GYDAYCVNGY GSQDLCHMDL TREVCPLTMK PKESVKEEEK APPKKYAIKP bmy_12162T0/1-740 GYDAYXVYGY GSQDLCRMDL TREVCPLTMK PKEMVKEEKK APPKKYAVKP ENSTTRP00000009548/1-784 GYDAYCVYGY GSQDLCHMDL TREVCPLTVK PKEMVKEEEK APPKKYAVKP BACU001827/1-866 GYDAYCVYGY GSQDLCHMDL TREVCPLTVK PKEMVKEEEK APPKKYAVKP 251 300 ENSP00000353942/1-874 PRDLCSRFEQ EQEVKKQQEI RAQEKKRLRE -EEERLMEAE KAKPDALHGL ENSBTAP00000010526/1-872 PRDLTSRFEQ EQEMKRQEAI KAEEENRRKQ -EEARLLEQE NAKTDPLHGL bmy_12162T0/1-740 PRDLTSRFEQ EQEIKRQEAI KAEEERRLKQ EEEERLVEQE SAKTDPLHGL ENSTTRP00000009548/1-784 PRDLTSRFER EQEIKRQEGV KAEEEKRLKQ --GERLA-AE SAKTD-LHD- BACU001827/1-866 PRDLTSRFEQ EQEIKRQEAI KAEEERRLKQ -EEERLVEQE SAKTDPLHGL 301 350 ENSP00000353942/1-874 RVHSWVLVLS GKREVPENFF IDPFTGHSYS TQDEHFLGIE SLWNHKNYWI ENSBTAP00000010526/1-872 RVHSWVLVLS GKREVPESFF IDPFTARSYS TQDDHFLGIE SLWNHKNYWV bmy_12162T0/1-740 RVHSWVLVLS GKREVPESFF IDPFTARSYS TQDDHFLGIE SLWNHKNYWV ENSTTRP00000009548/1-784 RVH-WVLV-S GKREVPESFF IDPFTARSYS TQDDHFLRIE SLWNHKNYWV BACU001827/1-866 RVHSWVLVLS GKREVPESFF IDPFTGRSYS TQDDHFLGIE SLWNHKNYWV 351 400 ENSP00000353942/1-874 NMQDCWNCCK DLIFDLGDPV RWEYM--LLG TDKSQLSLTE EDDSGINDED ENSBTAP00000010526/1-872 NMQDCWNCCK DLVFDLGDPV RWEYL--LLG TDKPFLSLTE EEDEGMNDDD bmy_12162T0/1-740 NMQDCWNCCK ----VLGGA- -WAGMAGTVG EGSVRDPLPK REEGDTVQEG ENSTTRP00000009548/1-784 NMQDCWNCCK DLVFDLGDPV RWEYL--LLE TDKPLLSLTE EEDDGMNDDD BACU001827/1-866 NMQDCWNCCK DLVFDLGDPV RWEYL--LLG TDKPLLSLTE EEDDGTNDDD 401 450 ENSP00000353942/1-874 DVENLGKEDE DKSFDMPHSW VEQIEISPEA FETRCPNGKK VIQYKRAKLE ENSBTAP00000010526/1-872 DVENLGKEDE DKSFDMPPSW VEQIEISPEA FETRCPNGKK VIQYKRAKLE bmy_12162T0/1-740 KAGEVGPVPQ ---------- ---------- ---------- ---------Q ENSTTRP00000009548/1-784 DVENLGKEDE DKSFDMPCSW VEQIEISPEA FETRCPNGKK VIQYKRARLE BACU001827/1-866 DVENLGKEDE DKSFDMPCSW VEQIEISPEA FETRCPNGKK VIQYKRAKLE 451 500 ENSP00000353942/1-874 KWAPYLNSNG LVSRLTTYED LQCTNILEIK EWYQNREDML ELKHINKTTD ENSBTAP00000010526/1-872 KWAPYLNNNG LVCRLTTYED LECTKTLEMK EWYQNREDML ELKHINKITG bmy_12162T0/1-740 QWP------- ---------- --GTKTLEIK EWFQNREDML ELKHINKVTG ENSTTRP00000009548/1-784 KWAPYLNNNG LVCRLTTYED LQCTKILEIK EWFQNRKDML ELKHINKVTG BACU001827/1-866 KWAPYLNNNG LVCRLTTYED LECTKTLEIK EWFQNREDML ELKHINKVTG 501 550 ENSP00000353942/1-874 LKTDYFKPGH PQALRVHSYK SMQPEMDRVI EFYETARVDG LMKREETPRT ENSBTAP00000010526/1-872 LNVDYFKPGH PQALRVHSYK SMQPEMDRVM EFYETARVDG LIKREETPKT bmy_12162T0/1-740 LNIDYFKPGH PQALRVHSYT SMQPEMDRVM EFYETARVDG LIKREETPRT ENSTTRP00000009548/1-784 LNIDYFKPGH PQALRAHSYT SMQPEMDRVM EFYETARVDG LIKREETPRT BACU001827/1-866 LNIDYFKPGH PQALRVHSYT SMQPEMDRVM EFYETARVDG LIKREETPRT 551 600 ENSP00000353942/1-874 MTEYYQGRPD FLSYRHASFG PRVKKLTLSS AESNPRPIVK ITERFFRNPA ENSBTAP00000010526/1-872 MTEHYQGRPD FLSYRHVNFG PRMKKLALNS AESNPRPMVK ITERFFRNPA bmy_12162T0/1-740 MTEYYQGRPD LLSYRHVNFG PRIKKLALNS AESNPRPMVK ITERFFRNPA ENSTTRP00000009548/1-784 MTEYYQGRPD LLSYRHVNFG PRIKKLSLNS AESNPRPVVK ITERFSRNPA BACU001827/1-866 MTEYYQGRPD LLSYRHVNFG PRIKKLALNS AESNPRPVVK ITERFFRNPA 601 650 ENSP00000353942/1-874 KPAEEDVAER VFLVAEERIQ LRYHCREDHI TASKREFLRR TEVDSKGNKI ENSBTAP00000010526/1-872 KPADEDVAER VFLIAEERIQ LRYHCRSDHI TANKREFLRR TEVDSKGNKI bmy_12162T0/1-740 KPADEDVAER VFLILDERIQ LRYHCREDHI TASKREFLWR TEGDSKGNKI ENSTTRP00000009548/1-784 KPADEDVAER VFLLLDERIQ LRYHCREDHL TASKREFLWR TEGDSKGNKI BACU001827/1-866 KPADEDVAER VFLILDEHIQ LRYHCREDRI TASKREFLWR TEGDSKGNKI 651 700 ENSP00000353942/1-874 IMTPDMCISF EVEPMEHTKK LLYQYEAMMH LKREEKLSRH QVWESELEVL ENSBTAP00000010526/1-872 IMTPDMCISF EVEPMEHTKK LLYQYEAMMK LKNEEKLSRH QAWESELEVL bmy_12162T0/1-740 IMTPDMCLSF ---------- ---------- ---------- -------EVL ENSTTRP00000009548/1-784 IMTPDMCLSF EVEPMEHTKK LLYQYEAMMK LKNEEKLARH QAWESELEVL BACU001827/1-866 IMTPDMCLSF EVEPMEHTKK LLYQPEAMMK LKNEEKLSRH QAWESELEVL 701 750 ENSP00000353942/1-874 EILKLREEEE AAHTLTISIY DTKRNEKSKE YREAMERMMH EEHLRQVETQ ENSBTAP00000010526/1-872 EILKLREEEE EAHTLTISIY DTKRNEKCKE YREAMERVLH EEHLRQVEAQ bmy_12162T0/1-740 EILKLREEEE AAHALTISIY DTKRNEKSKE YREAMERVMH EEQLWQVEAQ ENSTTRP00000009548/1-784 EILKLREEEE AAHVLTISIY DTKRNEKSKE YREAMERMML EEHLWQAEAQ BACU001827/1-866 EILKLREEEE AAHALTISIY DTKRNEKSKE YREAMERVMH EEHLWQVEAQ 751 800 ENSP00000353942/1-874 LDYLAPFLAQ LPPGEKLTCW QAVRLKDECL SDFKQRLINK ANLIQARFEK ENSBTAP00000010526/1-872 LDYLAPFLAQ LPPGEKLTRW QAVRLKDECL NDFKQRLIDK ANLIQARFEK bmy_12162T0/1-740 LDYLAPFLAQ LPPGEKLTRW QA-------- ---------- ---------- ENSTTRP00000009548/1-784 LDYLAPFLAQ LPPGEKLTRW QAVRLKDECL SDFKQRLIDK ANLIQARFEK BACU001827/1-866 LDYLAPFLAQ LPPGEKLTRW QAVRLKDECL SDFKQRLIDK ANLIQARFEK 801 850 ENSP00000353942/1-874 ETQELQKKQQ WYQENQVTLT PEDEDLYLSY CSQAMFRIRI LEQRLNRHKE ENSBTAP00000010526/1-872 ETQELQKKQQ WYQENQVTLT PEDEDLYLSY CSQAMFRIRI LEQRLSRHKE bmy_12162T0/1-740 ETQELQKQQQ WYQENQVTLT PEDEDLYLSY CSQAMFRIRI LEQRLNRHKE ENSTTRP00000009548/1-784 ---------- ---------- ---------- ---------- ---------- BACU001827/1-866 ETQELQKQQQ WYQENQVTLT PEDEDLYLSY CSQAMFRIRI LEQRLNRHKE 851 900 ENSP00000353942/1-874 LAPLKYLALE EKLYKDPRLG ELQKIFA ENSBTAP00000010526/1-872 LAPLKYLALE EKLYKDPRLV ELLKVFV bmy_12162T0/1-740 LAPLKYLALE EKLYKDPRLV ELLKVFV ENSTTRP00000009548/1-784 ---------- ---------- ------- BACU001827/1-866 LAPLKYLALE EKLYKDPRLV EFLKVFV