KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:41:22 2014 Check: 00 .. Name: BACU005278/1-1064 Len: 1311 Check: 921 Weight: 1.00 Name: ENSBTAP00000010532/1-579 Len: 1311 Check: 9500 Weight: 1.00 Name: bmy_20079T0/1-822 Len: 1311 Check: 2189 Weight: 1.00 Name: ENSTTRP00000007392/1-574 Len: 1311 Check: 7361 Weight: 1.00 // 1 50 BACU005278/1-1064 MASALEQFVN SVRQLSAQGQ MT-------Q LCELINKSGE LLAKNLSHLD ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 GAGGRAAAPA SRLTLELLGS CCLPGLRVWR GSARLAGWGR RTARSPSTAR ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 51 100 BACU005278/1-1064 TVLGALDVQE HSLGVLAVLF VKFSMPSVPD FETLFSQVQL FISTCNGEHI ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 AWYRPAESRA PRRARRICEG TRSADIQTPS RPLLSPRGAL CSFGCHLGAL ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 101 150 BACU005278/1-1064 RYATDTF--- ----AGLCHQ LTNALVERKQ PL--RGIGVL KQAIDKMQMN ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 SSETTSHLLR CFSALDPCPC VPNAVTAREE AVCHASLPAW KQAWPSLQGT ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 151 200 BACU005278/1-1064 TNQLTSVHAD LCQLCLLAKC FKPALPYLDV DMVDICKENG AYEAKHFLCY ENSBTAP00000010532/1-579 MNAIVA---- LCHFCEL--- ---------- ---------- -HGPRTLFC- bmy_20079T0/1-822 MNAIVA---- LCHFCEL--- ---------- ---------- -HGPRTLFC- ENSTTRP00000007392/1-574 MNAIVA---- LCHFCEL--- ---------- ---------- -HGPRTLFC- 201 250 BACU005278/1-1064 YYYGGMVYTG LKNFERALYF YEQAIATPAM AVSHIMLEAY KKYILVSLIL ENSBTAP00000010532/1-579 ---------- ---------- -TEVLHAP-- ---------- ---------- bmy_20079T0/1-822 ---------- ---------- -TEVLHAP-- ---------- ---------- ENSTTRP00000007392/1-574 ---------- ---------- -TEVLHAP-- ---------- ---------- 251 300 BACU005278/1-1064 LGKVQQLPKY TSQIVGRFIK PLSNAYHELA QVYSTNNPSE LRNLVTKHSE ENSBTAP00000010532/1-579 ------LPQG AGSGDGA--- ---------- ---GRGEPAD ---------- bmy_20079T0/1-822 ------LPQG AGSGDGL--- ---------- ---GQGEQAE ---------- ENSTTRP00000007392/1-574 ------LPQG AGSGDGP--- ---------- ---GRGEHAE ---------- 301 350 BACU005278/1-1064 TFTRDNNMGL VKQCLSSLYK KNIQRLTKTF LTLSLQDMAS RVQLSGPQEA ENSBTAP00000010532/1-579 ----EEEGGI ---------- ---------- ------QMSS RIRAHSPAEG bmy_20079T0/1-822 ----EEEGGI ---------- ---------- ------QMSS RVRAHSPAEG ENSTTRP00000007392/1-574 ----EEEGGI ---------- ---------- ------QMSS RLRAHSPAEG 351 400 BACU005278/1-1064 EKYVLHMIED GEIFASINQK DGMVSFHDNP EKYNNPAMLH NIDQEMLRCI ENSBTAP00000010532/1-579 A--------- ---------- -SAESSSPGP KKSD------ ---------- bmy_20079T0/1-822 A--------- ---------- -SAESSSPGP KKSD------ ---------- ENSTTRP00000007392/1-574 A--------- ---------- -SAESSSPGP KKSD------ ---------- 401 450 BACU005278/1-1064 ELDERLRAMD QEITVNPQFV QKGCRSLAAG HPGYISHDKE TSIKYVSHQH ENSBTAP00000010532/1-579 ---------- ---------M CEGCRSLAAG HPGYISHDKE TSIKYVSHQH bmy_20079T0/1-822 ---------- ---------M CEGCRSLAAG HPGYISHDKE TSIKYVSHQH ENSTTRP00000007392/1-574 ---------- ---------M CEGCRSLAAG HPGYISHDKE TSIKYVSHQH 451 500 BACU005278/1-1064 PNHPQLFSIV RQACVRSLSC EVCPGREGPI FFGDEQHGFV FSHTFFIKDS ENSBTAP00000010532/1-579 PNHPQLFSIV RQACVRSLSC EVCPGREGPI FFGDEQHGFV FSHTFFIKDS bmy_20079T0/1-822 PNHPQLFSIV RQACVRSLSC EVCPGREGPI FFGDEQHGFV FSHTFFIKDS ENSTTRP00000007392/1-574 PNHPQLFSIV RQACVRSLSC EVCPGREGPI FFGDEQHGFV FSHTFFIKDS 501 550 BACU005278/1-1064 LARGFQRWYS VIAIMMDRIY LINSWPFLLG KIRGIIDELQ GKALKVFEAE ENSBTAP00000010532/1-579 LARGFQRWYS IIAIMMDRIY LINSWPFLLG KIRGIIDELQ GKALKVFEAE bmy_20079T0/1-822 LARGFQRWYS IIAIMMDRIY LINSWPFLLG KIRGIIDELQ GKALKVFEAE ENSTTRP00000007392/1-574 LARGFQRWYS IIAIMMDRIY LINSWPFLLG KIRGIIDELQ GKALKVFEAE 551 600 BACU005278/1-1064 QFGCPQRAQR MNTAFTPFLH QRNGNAARSL TSLTNDDSLW ACLHTSFAWL ENSBTAP00000010532/1-579 QFGCPQRAQR MNTAFTPFLH QRNGNAARSL TSLTNDDSLW ACLHTSFAWL bmy_20079T0/1-822 QFGCPQRAQR MNTAFTPFLH QRNGNAARSL TSLTNDDSLW ACLHTSFAWL ENSTTRP00000007392/1-574 QFGCPQRAQR MNTAFTPFLH QRNGNAARSL TSLTNDDSLW ACLHTSFAWL 601 650 BACU005278/1-1064 LKACGSRLTE KLLEGAPTED TLVQMEQLA- ---------- ---------- ENSBTAP00000010532/1-579 LKACGSRLTE KLLEGAPTED TLVQMEQLA- ---------- ---------- bmy_20079T0/1-822 LKACGSRLTE KLLEGAPTED TLVQMEQLAV GPEVFIRVVV PKPPGNWASL ENSTTRP00000007392/1-574 LKACGSRLTE KLLEGAPTED TLVQMEQLA- ---------- ---------- 651 700 BACU005278/1-1064 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 PRFAIRSPHL GVLSNCPGES GSLLFFGDDW IFSDVGPGPQ TWGGVNEAHD ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 701 750 BACU005278/1-1064 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 ASRVSCVTTC CFLQVIGLNK LALLRAGPCR PVTRVRAGCP AKGRAGWLVK ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 751 800 BACU005278/1-1064 ---------- ---------- ------DLEE ESESWGNSEA EEEEKTPVLP ENSBTAP00000010532/1-579 ---------- ---------- ------ELEE ESESWDNSEA EEEEKGPALP bmy_20079T0/1-822 GRARSEETEA RPAFTPSRCG RPGTVCHLEE ESESWGNSEA EEEEKAPVLP ENSTTRP00000007392/1-574 ---------- ---------- ------DLEE ESESWGSSEA GEEEK----- 801 850 BACU005278/1-1064 EGAEGRELTR CPADSSLLSD CGNWQPRKLS VFKSLRHMR- ---------- ENSBTAP00000010532/1-579 EGAEGRELTK CPAESSLLSD CGAWQPRKLS VFKSLRHMR- ---------- bmy_20079T0/1-822 EGAEGRELTK CPADSSLLSD CGNWQPRKLS VFKSLRHMRQ NWKQPECTTL ENSTTRP00000007392/1-574 EGAEGREPTK CPADSSLLSD CGNWQPRKLS VFKSLRHMR- ---------- 851 900 BACU005278/1-1064 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 GIASEQWPVV RTDEEVTAPR LRDSQPQRTW LEAGAPDVDP LSGAALGCRH ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 901 950 BACU005278/1-1064 ---------- ---------- ---QVLGAPS FRTLAWHVLM GNQVIWKSRD ENSBTAP00000010532/1-579 ---------- ---------- ---QVLGAPS FRTLAWHVLM GNQVIWKSRD bmy_20079T0/1-822 RDRALPRIGE KILKCTRALG SDLQVLGAPS FRTLAWHVLM GNQVIWKSRD ENSTTRP00000007392/1-574 ---------- ---------- ---QVLGAPS FRTLAWHVLM GNQVIWKSRD 951 1000 BACU005278/1-1064 ADLVHSAFEV LRTMLPVGCV RIIPYSSQYE EAYRCNFLGL GPHVQIPPHV ENSBTAP00000010532/1-579 SDLVHSAFEV LRTMLPVGCV RVIPYSSQYE EAYRCNFLGL SPHVQIPPHV bmy_20079T0/1-822 ADLVHSAFEV LRTMLPVGCV RVIPYSSQYE EAYRCNFLGL GPHVQIPPHV ENSTTRP00000007392/1-574 ADLVHSAFEV LRTMLPVGCV RVIPYSSQYE EAYRCNFLGL GPHVQIPPHV 1001 1050 BACU005278/1-1064 LASEFAVVVE VHTAARSSLH PAGCEDEQSL SKHEFVVTSG SAVAADRAGP ENSBTAP00000010532/1-579 LASEFAVVVE VHTATRSSLH AVGCESEQPL SKYEFVVTSG SPVAADRVGP bmy_20079T0/1-822 LAS------- ---------- -GAC------ ---------- ------RVG- ENSTTRP00000007392/1-574 LASEFAVVVE VHTAARSSLQ PAGCEDEPSL SKHEFVVTSG SAVAADRAGP 1051 1100 BACU005278/1-1064 TILSKVEAAL TNQNLSVDVV DQCLVCLKEE WMNKVKVLFK FTKVDSRPKE ENSBTAP00000010532/1-579 TILNKMEAAL TNQNLSVDVV DQCLVCLKEE WMNKVKVLFK FTKVDSRPKE bmy_20079T0/1-822 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007392/1-574 TILSKVEAAL TNQNLSVDVV DQCLVCLKEE WMNKVKVLFK FTKVDSRPKE 1101 1150 BACU005278/1-1064 DTQKLLSILG ASEEDNVKLL KFWMTGLSKT YKSHLMSTVT CTEALLRVPG ENSBTAP00000010532/1-579 DTQKLLSILG ASEEDNVKLL KFWMTGLSKT YKSHLMSTVR SPTAL----- bmy_20079T0/1-822 --------LG ---------- ---------- ---------- ---------- ENSTTRP00000007392/1-574 DTQKLLSILG ASEEDNVKLL KFWMTGLSKT YKSHLLSTVR SPMAS----- 1151 1200 BACU005278/1-1064 AAPSGCPCSL PHGESSLSRL LRALLAARAS LELCLFAFSS PQLGRAVQLL ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 1201 1250 BACU005278/1-1064 HQRGVRVRVV TDCDYMALNG SQIGLLRKAG IQVRHDQDLG YMHHKFAIVD ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 1251 1300 BACU005278/1-1064 GKVLITGSLN WTTQAIQNNR ENVLITEDEE YVRLFLEEFE RIWEEFDPAK ENSBTAP00000010532/1-579 ---------- ---------- ---------- ---------- ---------- bmy_20079T0/1-822 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007392/1-574 ---------- ---------- ---------- ---------- ---------- 1301 1350 BACU005278/1-1064 YTFFPQNRRR R ENSBTAP00000010532/1-579 -------EPR N bmy_20079T0/1-822 ---------- - ENSTTRP00000007392/1-574 -------EPR S