KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:23 2014 Check: 00 .. Name: bmy_06582T0/1-413 Len: 548 Check: 3149 Weight: 1.00 Name: ENSP00000012443/1-499 Len: 548 Check: 7450 Weight: 1.00 Name: ENSBTAP00000010538/1-499 Len: 548 Check: 8309 Weight: 1.00 Name: BACU002133/1-540 Len: 548 Check: 6119 Weight: 1.00 Name: ENSTTRP00000001515/1-499 Len: 548 Check: 7995 Weight: 1.00 // 1 50 bmy_06582T0/1-413 ---------- ---------- ---------- ---------- ---------- ENSP00000012443/1-499 MAMAEGERTE CAEPPRDEPP ADGALKRAEE LKTQANDYFK AKDYENAIKF ENSBTAP00000010538/1-499 MAMAEGERTE CAEPPRDEPP ADGALKRAEE LKTQANDYFK AKDYENAIKF BACU002133/1-540 MAMAEGERTE CAEPPRDEPP ADGALKRAEE LKTQANDYFK AKDYENAIKF ENSTTRP00000001515/1-499 MAMAEGERTE CAEPPRDEPP ADGALKRAEE LKTQANDYFK AKDYENAIKF 51 100 bmy_06582T0/1-413 ---------- ---------- ---------- ---------- MDKRYIKGYY ENSP00000012443/1-499 YSQAIELNPS NAIYYGNRSL AYLRTECYGY ALGDATRAIE LDKKYIKGYY ENSBTAP00000010538/1-499 YSQAIELNPS NAIYYGNRSL AYLRTECYGY ALADATRAVE MDKKYIKGYY BACU002133/1-540 YSQAIELSPS NAIYYGNRSL AYLRTECYGY ALADATRAIE MDKRYIKGYY ENSTTRP00000001515/1-499 YSQAIELNPS HAIYYGNRSL AYLRTECYGY ALADATRAIE MDKKYIKGYY 101 150 bmy_06582T0/1-413 RRAASNMALG KFRAALRDYE TVVKVKPHDK DAKMKYQECN KVVKQKAFER ENSP00000012443/1-499 RRAASNMALG KFRAALRDYE TVVKVKPHDK DAKMKYQECN KIVKQKAFER ENSBTAP00000010538/1-499 RRAASNMALG KFRAALRDYE TVVKVKPHDK DAKMKYQECN KIVKQKAFER BACU002133/1-540 RRAASNMALG KFRAALRDYE TVVKVKPHDK DAKMKYQECN KIVKQKAFER ENSTTRP00000001515/1-499 RRAASNMALG KFRAALRDYE TVVKVKPHDK DAKMKYQECN KIVKQKAFER 151 200 bmy_06582T0/1-413 AIAGDEHKRS VVDSLDIESM MAMASDSHPP IHTPAIEDEY SGPKLEDGKV ENSP00000012443/1-499 AIAGDEHKRS VVDSLDIESM ---------- ----TIEDEY SGPKLEDGKV ENSBTAP00000010538/1-499 AIAGDEHKRS VVDSLDIESM ---------- ----TIEDEY SGPKLEDGRV BACU002133/1-540 AIAGDEHRRS VVDSLDIESM MAMASDSHPP IHTPAIEDEY SGPKLEDGKV ENSTTRP00000001515/1-499 AIAGDEHKRS VVDSLDIESM ---------- ----TIEDEY SGPKLEDGKV 201 250 bmy_06582T0/1-413 TITFMKELMQ WYKDQKKLHR KCAYQILVQV KEVLSKLSTL VETTLKETEK ENSP00000012443/1-499 TISFMKELMQ WYKDQKKLHR KCAYQILVQV KEVLSKLSTL VETTLKETEK ENSBTAP00000010538/1-499 TITFMKELMQ WYKDQKKLHR KCAYQILVQV KEVLSKLSTL VETTLKETEK BACU002133/1-540 TITFMKELMQ WYKDQKKLHR KCAYQILVQV KEVLSKLSTL VETTLKETEK ENSTTRP00000001515/1-499 TITFMKELMQ WYKDQKKLHR KCAYQILVQV KEVLSKLSTL VETTLKETEK 251 300 bmy_06582T0/1-413 ITVCGDTHGQ FYDLLNIFEL NGLPSDTNPY ---------- ---------- ENSP00000012443/1-499 ITVCGDTHGQ FYDLLNIFEL NGLPSETNPY ---------- ---------- ENSBTAP00000010538/1-499 ITVCGDTHGQ FYDLLNIFEL NGLPSETNPY ---------- ---------- BACU002133/1-540 ITVCGDTHGQ FYDLLNIFEL NGLPSDTNPY GSAERSRGVE GLRREHSPRP ENSTTRP00000001515/1-499 ITVCGDTHGQ FYDLLNIFEL NGLPSDTNPY ---------- ---------- 301 350 bmy_06582T0/1-413 ---------- ---------- ----PETYGK SFKKEPKAHW GKGRASGNHE ENSP00000012443/1-499 -------IFN GDFVDRGSFS VEVILTLFG- -FKLLYPDHF HLLR--GNHE ENSBTAP00000010538/1-499 -------IFN GDFVDRGSFS VEVILTLFG- -FKLLYPDHF HLLR--GNHE BACU002133/1-540 LFSLAGQIFN GDFVDRGSFS VEVILTLFG- -FKLLYPDHF HLLR--GNHE ENSTTRP00000001515/1-499 -------IFN GDFVDRGSFS VEVILTLFG- -FKLLYPDHF HLLR--GNHE 351 400 bmy_06582T0/1-413 TDNMNQIYGF EGEVKAKYTA QMYELFSEVF EWLPLAQCIN GKVLVPCATC ENSP00000012443/1-499 TDNMNQIYGF EGEVKAKYTA QMYELFSEVF EWLPLAQCIN GKVLI----M ENSBTAP00000010538/1-499 TDNMNQIYGF EGEVKAKYTA QMYELFSEVF EWLPLAQCIN GKVLI----M BACU002133/1-540 TDNMNQIYGF EGEVKAKYTA QMYELFSEVF EWLPLAQCIN GKVLI----M ENSTTRP00000001515/1-499 TDNMNQIYGF EGEVKAKYTA QMYELFSEVF EWLPLAQCIN GKVLI----M 401 450 bmy_06582T0/1-413 SGRTRSRRSV CPGPWPAGAG CGQSGRAGGA AGTL-SSLSP QNGRSVSKRG ENSP00000012443/1-499 HGGLFSEDGV TLDDIRKIER NRQPPDSGPM CDLLWSDPQP QNGRSISKRG ENSBTAP00000010538/1-499 HGGLFSEDGV TLDDIRKIER SRQPPDSGPM CDLLWSDPQP QNGRSVSKRG BACU002133/1-540 HGGLFSEDGV TLDDIRKIER SRQPPDSGPM CDLLWSDPQP QNGRSVSKRG ENSTTRP00000001515/1-499 HGGLFSEDGV TLDDIRKIER SRQPPDSGPM CDLLWSDPQP QNGRSVSKRG 451 500 bmy_06582T0/1-413 VSCQFGPDVT KAFLEENSLD YIIRSHEVKA EGYEVAHGGR CVTVFSAPNY ENSP00000012443/1-499 VSCQFGPDVT KAFLEENNLD YIIRSHEVKA EGYEVAHGGR CVTVFSAPNY ENSBTAP00000010538/1-499 VSCQFGPDVT KAFLEENKLD YIIRSHEVKA EGYEVAHGGR CVTVFSAPNY BACU002133/1-540 VSCQFGPDVT KAFLEENNLD YIIRSHEVKA EGYEVAHGGR CVTVFSAPNY ENSTTRP00000001515/1-499 VSCQFGPDVT KAFLEENNLD YIIRSHEVKA EGYEVAHGGR CVTVFSAPNY 501 550 bmy_06582T0/1-413 CDQMGNKAAY IHLRGSDLRP QFHQFTAVPH PDVKPMAYAS TLLQLGMM ENSP00000012443/1-499 CDQMGNKASY IHLQGSDLRP QFHQFTAVPH PNVKPMAYAN TLLQLGMM ENSBTAP00000010538/1-499 CDQMGNKAAY IHLRGADLRP QFHQFTAVPH PDVKPMAYAS TLLQLGMM BACU002133/1-540 CDQMGNKAAY IHLRGSDLRP QFHQFTAVPH PDVKPMAYAS TLLQLGMM ENSTTRP00000001515/1-499 CDQMGNKAAY IHLRGSDLRP QFHQFTAVPH PDVKPMAYAS TLLQLGMM